Cryptic genetic diversity in “widespread” Southeast Asian bird species suggests that Philippine avian endemism is gravely underestimated

Mistakenly classifying morphologically cryptic endemic species as populations of widespread species potentially interferes with the conservation of biodiversity because undetected endemics that are imperilled may lack appropriate protection. It also impedes the reconstruction of the evolutionary history of a taxon by obscuring the number and distributional limits of species. Here, we present genetic and phylogenetic evidence corroborated by morphology that Philippine populations of seven widespread, non-migratory passerine birds might represent unrecognized, distinct species. An extrapolation based on this finding suggests that the proportion of endemic bird species in the Philippines could be much higher than currently estimated. This high degree of cryptic diversity in a well-studied, volant taxon implies that large numbers of unrecognized species can be expected in less thoroughly studied groups. We predict that genetic investigations of insular populations of widespread species will frequently reveal unrecognized island endemics, and because of the vulnerability of island habitats and their biota, these taxa may be particularly susceptible to extinction.     

Fixing flammable Forest: The scalar politics of peatland governance and restoration in Indonesia

Peatland fires and the impact of transboundary haze are often intertwined with socio‐environmental externalities of neoliberal forest governance and overlapping systems of resource property rights in Indonesia. New peatland governance strategies are emerging to address fires and haze by reorganising peatland management using a more ecologically relevant scale that territorialises peatland according to its hydrological characteristics. Employing the concept of the eco‐scalar fix, this paper interrogates rescaling peatland governance as a strategy to address the socio‐ecological crisis associated with the conversion of peatland into mono‐agricultural land. However, rescaling peatland governance entails the risk of merely displacing socio‐environmental crises to areas considered less ecologically important rather than addressing them. Drawing on a case study of a peatland restoration in Riau, Indonesia, this paper shows how emerging hybrid forms of peatland governance can address the environmental externalities that have unintentionally been created. This hybrid form of peatland governance has pressured actors across multiple types of property to rework the ways that environmental commons are controlled and accessed.     

Practical critique: Bridging the gap between critical and practice‐oriented REDD+ research communities

Reducing Emissions from Deforestation and Forest Degradation (REDD+) is an ambitious global programme oriented towards improving forest carbon management. It aims to attract new sources of ‘green’ capital to fund emissions reductions from avoided deforestation and sustainable forest management. REDD+ is transforming forest conservation, as a diverse array of new stakeholders become involved. Not surprisingly, REDD+ has proved divisive, as critics concern themselves with issues of power, justice, and commodification, while practice‐oriented researchers tackle similar issues from different perspectives, focusing on benefit sharing, safeguards, additionality, measuring and verification. In this paper we explore the different roles of critical and practical research, and argue that there is a need for greater sharing of knowledge across current divides. We draw on our own experiences of conducting a research project on REDD+ in Indonesia that involved critical and practice‐oriented researchers. We argue that critical research disconnected from practical matters can have perverse outcomes for practitioners who are ultimately working towards similar goals; while uncritical practice‐oriented research has the potential to lead to a dilution of core values of environmental justice and conservation. In contrast, forms of practical critique provide ways of researching REDD+ that have practical value while maintaining critical insights.     

Leptospira detection in flood‐prone environment of Jakarta,Indonesia

The study about Leptospira, particularly pathogenic strain, was conducted in the flood‐prone area in the Special Capital Region of Jakarta. The aim of this study was to discover and identify the serovars of pathogenic Leptospira in the environment, which might infect human during flooding. Seventy‐three samples, consisted of 36 samples of environmental water and 37 samples of soil, were collected from 5 districts of Jakarta. Their pH was measured, and the samples were then cultured in a modified Korthof's medium with 5‐fluorouracil (5‐FU) addition. Polymerase chain reaction, targeted on 23S rDNA (rrl), FlaB and LipL32 genes, was performed to identify Leptospira genus and differentiate the pathogenic. Identification of the pathogenic Leptospira was done utilising DNA sequencing. Seven samples showed amplification of rrl‐gene. flaB and lipl32‐PCR assay indicated one positive amplification band, each. Confirmation of flaB and lipl32 amplicons by DNA sequencing and BLAST analysis showed flaB amplicon (G1B; GenBank accession number MK006031.1 ) had 94% similarity with L. licerasiae ( LC005426.1 ), while lipl32 amplicon was not identified as lipl32 of Leptospira. Based on those results, one intermediate pathogenic and six saprophytic Leptospira were obtained from the environment in Jakarta.     

Community economies in Monsoon Asia: Keywords and key reflections

A diversity of place‐based community economic practices that enact ethical interdependence has long enabled livelihoods in Monsoon Asia. Managed either democratically or coercively, these culturally inflected practices have survived the rise of a cash economy, albeit in modified form, sometimes being co‐opted to state projects. In the modern development imaginary, these practices have been positioned as ‘traditional’, ‘rural’ and largely superseded. But if we read against the grain of modernisation, a largely hidden geography of community economic practices emerges. This paper introduces the project of documenting keywords of place‐based community economies in Monsoon Asia. It extends Raymond William’s cultural analysis of keywords into a non‐western context and situates this discursive approach within a material semiotic framing. The paper has been collaboratively written with co‐researchers across Southeast Asia and represents an experimental mode of scholarship that aims to advance a post‐development agenda.     

Milk production,plasma metabolite profiles and mammary arterial‐venous differences of milk precursors in early lactation cows milked at different frequencies by an automatic milking system

The objective of this study was to clarify the effect of different milking frequencies under an automatic milking system (AMS) on milk yield, plasma metabolite profiles and mammary arterial‐venous (A‐V) differences of milk precursors by mammary tissues in early lactation cows. Twelve Holstein cows were divided into two and four times milking frequency treatments by AMS after calving to 50 days postpartum. Cows were given a partial mixed ration ad libitum and a concentrate diet at every milking. Dry matter intake increased similarly in both treatments with advancing postpartum days. Milk yield was greater (P < 0.001) by 25% with four times milking, but milk composition was not affected by milking frequency. Body weight change was also not affected by milking frequency. Arterial concentrations of glucose and glutamate were lower (P < 0.05) for four times milking frequency. However, arterial concentration of nonesterified fatty acids did not differ between treatments. Although mammary A‐V differences of plasma concentration for most milk precursors did not differ between treatments, estimated plasma flow was higher (P < 0.05) for four times milking frequency. These results indicate that higher milking frequency may increase mammary uptake of milk precursors, whereas may not affect the extent of fat mobilization of early lactating cows from day 20 postpartum onward.     

Effect of density between intercropped sorghum and stylosanthes on biomass production and quality under varying NPK fertilizer application rates

Journal of Crop Science and Biotechnology - This field study was conducted to investigate the effect of spaced-row pattern and NPK fertilizer rates on productivity and quality of intercropped...     

Leaf blast disease reduction by rice-phyllosphere actinomycetes producing bioactive compounds

Fungal leaf blast, caused by Pyricularia oryzae, is a devastating disease of rice plants that annually causes severe production losses worldwide and is one of the top 10 fungal diseases that threaten global food security. Thus, a reliable control strategy against this disease is essential. In this study, the antagonistic activity of indigenous phyllosphere actinomycetes was elucidated against P. oryzae in vitro and in planta to develop an efficient, effective and environmental friendly approach to protect rice plants against P. oryzae. Of 75 isolates of actinomycetes isolated from the rice phyllosphere, 18 isolates inhibited P. oryzae by >45%. According to analysis of their 16 S rRNA gene sequences, the majority of the 18 isolates belonged to Streptomyces genera; others were identified as belonging to Saccharothrix, Gordonia, or Lentzea. Isolates that potentially produced a bioactive compound(s) were identified among the 18 isolates: 17 isolates (94.44%) had a domain marker for nonribosomal peptide synthetase (NRPS) gene and 12 (66.67%) had type-I polyketide synthase (PKS) gene in their corresponding genome. Interestingly, isolates JSN1.9, SKB2.14, and SKB2.3 suppressed disease suppression by approximately 88%. To our knowledge, this is the first report on the application of rice-phyllosphere actinomycetes producing bioactive compounds to control leaf blast disease in Indonesia. Thus, these findings have escalated the potential application of phyllosphere actinomycetes as a supreme biocontrol agent against fungal leaf blast disease.