Case-base maintenance with multi-objective evolutionary algorithms

Case-Base Reasoning is a problem-solving methodology that uses old solved problems, called cases, to solve new problems. The case-base is the knowledge source where the cases are stored, and the amount of stored cases is critical to the problem-solving ability of the Case-Base Reasoning system. However, when the case-base has many cases, then performance problems arise due to the time needed to find those similar cases to the input problem. At this point, Case-Base Maintenance algorithms can be used to reduce the number of cases and maintain the accuracy of the Case-Base Reasoning system at the same time. Whereas Case-Base Maintenance algorithms typically use a particular heuristic to remove (or select) cases from the case-base, the resulting maintained case-base relies on the proportion of redundant and noisy cases that are present in the case-base, among other factors. That is, a particular Case-Base Maintenance algorithm is suitable for certain types of case-bases that share some indicators, such as redundancy and noise levels. In the present work, we consider Case-Base Maintenance as a multi-objective optimization problem, which is solved with a Multi-Objective Evolutionary Algorithm. To this end, a fitness function is introduced to measure three different objectives based on the Complexity Profile model. Our hypothesis is that the Multi-Objective Evolutionary Algorithm performing Case-Base Maintenance may be used in a wider set of case-bases, achieving a good balance between the reduction of cases and the problem-solving ability of the Case-Based Reasoning system. Finally, from a set of the experiments, our proposed Multi-Objective Evolutionary Algorithm performing Case-Base Maintenance shows regularly good results with different sets of case-bases with different proportion of redundant and noisy cases.     

National geodatabase of tidal stream power resource in USA

A geodatabase of tidal constituents is developed to present the regional assessment of tidal stream power resource in the USA. Tidal currents are numerically modeled with the Regional Ocean Modeling System (ROMS) and calibrated with the available measurements of tidal current speeds and water level surfaces. The performance of the numerical model in predicting the tidal currents and water levels is assessed by an independent validation. The geodatabase is published on a public domain via a spatial database engine with interactive tools to select, query and download the data. Regions with the maximum average kinetic power density exceeding 500 W/m² (corresponding to a current speed of ～1 m/s), total surface area larger than 0.5 km² and depth greater than 5 m are defined as hotspots and documented. The regional assessment indicates that the state of Alaska (AK) has the largest number of locations with considerably high kinetic power density, followed by, Maine (ME), Washington (WA), Oregon (OR), California (CA), New Hampshire (NH), Massachusetts (MA), New York (NY), New Jersey (NJ), North and South Carolina (NC, SC), Georgia (GA), and Florida (FL).     

Comparing GC–MS,HPLC and H NMR analysis of beef longissimus dorsi tissue extracts to determine the effect of suspension technique and ageing

Beef longissimus dorsi muscle samples matured over a 21 day period were analysed using three different analytical techniques; ¹H NMR, GC–MS and HPLC. The data from the three experimental techniques were correlated with each other to determine if the results were statistically similar to each other. From our analysis we determined that the metabolites measured using ¹H NMR were statistically similar to the compounds quantified using the chromatography techniques (p < 0.001). In addition, using PCA, we were able to show that different metabolites, measured using the various analytical techniques produced very similar scores and loadings plots for all the analysis and extraction techniques undertaken across the 21 day time domain. Using a combination of these three different techniques provides a unique and holistic insight into the biochemistry behind the conversion of muscle to meat which would not be possible using any single technique alone.     

Associations of postural knowledge and basic motor skill with dyspraxia in autism: Implication for abnormalities in distributed connectivity and motor learning.

Children with autism often have difficulty performing skilled movements. Praxis performance requires basic motor skill, knowledge of representations of the movement (mediated by parietal regions), and transcoding of these representations into movement plans (mediated by premotor circuits). The goals of this study were (a) to determine whether dyspraxia in autism is associated with impaired representational (“postural”) knowledge and (b) to examine the contributions of postural knowledge and basic motor skill to dyspraxia in autism. Thirty-seven children with autism spectrum disorder (ASD) and 50 typically developing (TD) children, ages 8–13, completed (a) an examination of basic motor skills, (b) a postural knowledge test assessing praxis discrimination, and (c) a praxis examination. Children with ASD showed worse basic motor skill and postural knowledge than did controls. The ASD group continued to show significantly poorer praxis than did controls after accounting for age, IQ, basic motor skill, and postural knowledge. Dyspraxia in autism appears to be associated with impaired formation of spatial representations, as well as transcoding and execution. Distributed abnormality across parietal, premotor, and motor circuitry, as well as anomalous connectivity, may be implicated. (PsycINFO Database Record (c) 2010 APA, all rights reserved)     

Using Landscape Characteristics for Targeting Habitat Conservation and Restoration: A case study of ancient semi-natural woodland in the Chiltern Hills Area of Outstanding Natural Beauty,UK

Ancient semi-natural deciduous woodland is a rare and threatened habitat cited by the European Union's Habitats Directive (92/43/EEC). Current protection of this endangered habitat in the UK takes the form of site-specific reserve designations but, if the habitat is to be conserved and enhanced, a landscape-scale selective targeting system is required. In the absence of suitable species data, physical attributes of habitat patches are used as surrogate indicators of biodiversity. Using a land-use database held on a geographical information system, values of four abiotic criteria (patch area, patch shape, nearest-neighbour distance and surrounding land use) of 48 ancient semi-natural woodland patches in part of the Chiltern Hills Area of Outstanding Natural Beauty were calculated. In order to validate the findings, three lists of floral and faunal species, indicative of ancient semi-natural woodland, were compiled, and the patches ranked according to their alpha diversity using each list. Spearman's rank correlation coefficients were calculated for patch alpha diversity and patch area (0.322 to 0.482), patch shape (0.275 to 0.465) and nearest-neighbour distance ( - 0.092 to - 0.223). Multiple regression indicated that between 15 and 22% of the variation in alpha patch diversity was explained by the abiotic factors. It is suggested that spatial targeting at the landscape scale is a valuable approach to habitat conservation.     

Building dampness diagnosing the causes

In our January/February issue last year, Jim Smith described the insights he had gained as the human expert being ‘mined’ by the knowledge engineers for an expert system to aid diagnosis of the causes of dampness in buildings. An overview of that BREDAMP project is presented here, explaining the background to the project and its objectives, and the way the expert system was created, discussing in detail the methods used to capture the depth of knowledge available.     

The FKBP5 Gene Affects Alcohol Drinking in Knockout Mice and Is Implicated in Alcohol Drinking in Humans

FKBP5 encodes FK506-binding protein 5, a glucocorticoid receptor (GR)-binding protein implicated in various psychiatric disorders and alcohol withdrawal severity. The purpose of this study is to characterize alcohol preference and related phenotypes in Fkbp5 knockout (KO) mice and to examine the role of FKBP5 in human alcohol consumption. The following experiments were performed to characterize Fkpb5 KO mice. (1) Fkbp5 KO and wild-type (WT) EtOH consumption was tested using a two-bottle choice paradigm; (2) The EtOH elimination rate was measured after intraperitoneal (IP) injection of 2.0 g/kg EtOH; (3) Blood alcohol concentration (BAC) was measured after 3 h limited access of alcohol; (4) Brain region expression of Fkbp5 was identified using LacZ staining; (5) Baseline corticosterone (CORT) was assessed. Additionally, two SNPs, rs1360780 (C/T) and rs3800373 (T/G), were selected to study the association of FKBP5 with alcohol consumption in humans. Participants were college students (n = 1162) from 21–26 years of age with Chinese, Korean or Caucasian ethnicity. The results, compared to WT mice, for KO mice exhibited an increase in alcohol consumption that was not due to differences in taste sensitivity or alcohol metabolism. Higher BAC was found in KO mice after 3 h of EtOH access. Fkbp5 was highly expressed in brain regions involved in the regulation of the stress response, such as the hippocampus, amygdala, dorsal raphe and locus coeruleus. Both genotypes exhibited similar basal levels of plasma corticosterone (CORT). Finally, single nucleotide polymorphisms (SNPs) in FKBP5 were found to be associated with alcohol drinking in humans. These results suggest that the association between FKBP5 and alcohol consumption is conserved in both mice and humans.