Using LiDAR and quickbird data to model plant production and quantify uncertainties associated with wetland detection and land cover generalizations

Spatiotemporal data from satellite remote sensing and surface meteorology networks have made it possible to continuously monitor global plant production, and to identify global trends associated with land cover/use and climate change. Gross primary production (GPP) and net primary production (NPP) are routinely derived from the Moderate Resolution Imaging Spectroradiometer (MODIS) onboard satellites Terra and Aqua, and estimates generally agree with independent measurements at validation sites across the globe. However, the accuracy of GPP and NPP estimates in some regions may be limited by the quality of model input variables and heterogeneity at fine spatial scales. We developed new methods for deriving model inputs (i.e., land cover, leaf area, and photosynthetically active radiation absorbed by plant canopies) from airborne laser altimetry (LiDAR) and Quickbird multispectral data at resolutions ranging from about 30 m to 1 km. In addition, LiDAR-derived biomass was used as a means for computing carbon-use efficiency. Spatial variables were used with temporal data from ground-based monitoring stations to compute a six-year GPP and NPP time series for a 3600 ha study site in the Great Lakes region of North America. Model results compared favorably with independent observations from a 400 m flux tower and a process-based ecosystem model (BIOME-BGC), but only after removing vapor pressure deficit as a constraint on photosynthesis from the MODIS global algorithm. Fine-resolution inputs captured more of the spatial variability, but estimates were similar to coarse-resolution data when integrated across the entire landscape. Failure to account for wetlands had little impact on landscape-scale estimates, because vegetation structure, composition, and conversion efficiencies were similar to upland plant communities. Plant productivity estimates were noticeably improved using LiDAR-derived variables, while uncertainties associated with land cover generalizations and wetlands in this largely forested landscape were considered less important.     

The influence of epiphylls on remote sensing of humid forests

Epiphylls - lichens, fungi, liverworts, etc. infesting leaf surfaces - are found throughout humid forests of the world. It is well understood that epiphylls inhibit light interception by host plants, but their effect on remote sensing of colonized forests has not been examined. Incorporating leaf-level spectra from Terra Firme (primary forest) and Amazonian Caatinga (woodlands/forest growing on nutrient-deficient sandy soils), we used the GeoSAIL model to propagate leaf-level measurements to the canopy level and determine their effect on commonly used vegetation indices. In Caatinga, moderate infestations (50% leaf area epiphyll cover), lowered simulated Normalized Difference Vegetation Index (NDVI) and Enhanced Vegetation Index (EVI) values by 6.1% and 20.4%, respectively, largely due to near infrared dampening. Heavy infestation (100% cover) simulations exhibited decreases 1.5-2 times greater than those of moderate infestations. For Terra Firme, which are generally less affected by epiphylls, moderate (20% leaf area) and heavy infestations (40%) lowered EVI by 4.4% (S.D. 0.8%) and 8.1% (S.D. 1.5%), respectively. Near infrared and green reflectance were most affected at the canopy level, showing mean decreases of 10.6% (S.D. 2.25%) and 9.5% (S.D. 3.49%), respectively, in heavy Terra Firme infestations. Time series of Moderate Resolution Imaging Spectrometer (MODIS) data corroborated the modeling results, suggesting a degree of coupling between epiphyll cover and the EVI and NDVI. These results suggest that, without explicit consideration of the presence of epiphylls, remote sensing-based methodologies may underestimate leaf area index, biomass and productivity in humid forests.     

Utilising psychophysical techniques to investigate the effects of age,typeface design,size and display polarity on glance legibility

Psychophysical research on text legibility has historically investigated factors such as size, colour and contrast, but there has been relatively little direct empirical evaluation of typographic design itself, particularly in the emerging context of glance reading. In the present study, participants performed a lexical decision task controlled by an adaptive staircase method. Two typefaces, a ‘humanist’ and ‘square grotesque’ style, were tested. Study I examined positive and negative polarities, while Study II examined two text sizes. Stimulus duration thresholds were sensitive to differences between typefaces, polarities and sizes. Typeface also interacted significantly with age, particularly for conditions with higher legibility thresholds. These results are consistent with previous research assessing the impact of the same typefaces on interface demand in a simulated driving environment. This simplified methodology of assessing legibility differences can be adapted to investigate a wide array of questions relevant to typographic and interface designs.

Practitioner Summary: A method is described for rapidly investigating relative legibility of different typographical features. Results indicate that during glance-like reading induced by the psychophysical technique and under the lighting conditions considered, humanist-style type is significantly more legible than a square grotesque style, and that black-on-white text is significantly more legible than white-on-black.     

Multi-modal demands of a smartphone used to place calls and enter addresses during highway driving relative to two embedded systems

There is limited research on trade-offs in demand between manual and voice interfaces of embedded and portable technologies. Mehler et al. identified differences in driving performance, visual engagement and workload between two contrasting embedded vehicle system designs (Chevrolet MyLink and Volvo Sensus). The current study extends this work by comparing these embedded systems with a smartphone (Samsung Galaxy S4). None of the voice interfaces eliminated visual demand. Relative to placing calls manually, both embedded voice interfaces resulted in less eyes-off-road time than the smartphone. Errors were most frequent when calling contacts using the smartphone. The smartphone and MyLink allowed addresses to be entered using compound voice commands resulting in shorter eyes-off-road time compared with the menu-based Sensus but with many more errors. Driving performance and physiological measures indicated increased demand when performing secondary tasks relative to ‘just driving’, but were not significantly different between the smartphone and embedded systems.

Practitioner Summary: The findings show that embedded system and portable device voice interfaces place fewer visual demands on the driver than manual interfaces, but they also underscore how differences in system designs can significantly affect not only the demands placed on drivers, but also the successful completion of tasks.     

An algorithm for generalizing topography to grids while preserving subscale morphologic characteristics—creating a glacier bed DEM for Jakobshavn trough as low-resolution input for dynamic ice-sheet models

The objective of this paper is to derive an algorithm for preserving important subscale morphologic characteristics at grids of lower-resolution, in particular for linear features such as canyons and ridge lines. The development of such an algorithm is necessitated by applications that require reduced spatial resolution, as is common in cartographic generalization, GIS applications, and geophysical modeling. Since any algorithm that results in weighted averages, including optimum interpolation and ordinary kriging, cannot reproduce correct depths, a new algorithm is designed based on principles of mathematical morphology. The algorithm described here is applied to derive a subglacial bed of the Greenland Ice Sheet that includes the trough of Jakobshavn Isbræ as a continuous canyon at correct depth in a low-resolution (5-km) digital elevation model (DEM). Data from recent airborne radar measurements of the elevation of the subglacial bed as part of the CReSIS project are utilized. The morphologic algorithm is designed with geophysical ice-sheet modeling in mind, in the following context. Currently occurring changes in the Earth's climate and the cryosphere cause changes in sea level, and the societal relevance of these natural processes motivates estimation of maximal sea-level rise in the medium-term future. The fast-moving outlet glaciers are more sensitive to climatic change than other parts of the Greenland ice sheet. Jakobshavn Isbrae, the fastest-moving ice stream in Greenland, follows a subglacial geologic trough. Since the existence of the trough causes the acceleration of the slow-moving inland ice in the Jakobshavn region and the formation of the ice stream, correct representation of the trough in a DEM is essential to model changes in the dynamics of the ice sheet and resultant sea-level predictions, even if current ice-sheet models can typically be run only at 5-km resolution. The DEM resultant from this study helps to bridge the conceptual gap between data analysis and geophysical modeling approaches. It is available as SeaRISE Greenland bed data set dev1.2 at http://websrv.cs.umt.edu/isis/index.php/SeaRISE_Assessment.     

Dynamic vs. Oblivious Routing in Network Design

Consider the robust network design problem of finding a minimum cost network with enough capacity to route all traffic demand matrices in a given polytope. We investigate the impact of different routing models in this robust setting: in particular, we compare oblivious routing, where the routing between each terminal pair must be fixed in advance, to dynamic routing, where routings may depend arbitrarily on the current demand. Our main result is a construction that shows that the optimal cost of such a network based on oblivious routing (fractional or integral) may be a factor of Ω(log n) more than the cost required when using dynamic routing. This is true even in the important special case of the asymmetric hose model. This answers a question in (Chekuri, SIGACT News 38(3):106–128, 2007), and is tight up to constant factors. Our proof technique builds on a connection between expander graphs and robust design for single-sink traffic patterns (Chekuri et al., Networks 50(1):50–54, 2007).     

Analyzing the efficacy of using digital ink devices in a learning environment

There has been increased interest on the impact of mobile devices such as PDAs and Tablet PCs in introducing new pedagogical approaches and active learning experiences. We propose an intelligent system that efficiently addresses the inherent subjectivity in student perception of note taking and information retrieval. We employ the idea of cross indexing the digital ink notes with matching electronic documents in the repository. Latent Semantic Indexing is used to perform document and page level indexing. Thus for each retrieved document, the user can go over to the relevant pages that match the query. Techniques to handle problems such as polysemy (multiple meanings of a word) in large databases, document folding and no match for query are discussed. We tested our system for its performance, usability and effectiveness in the learning process. The results from the exploratory studies reveal that the proposed system provides a highly enhanced student learning experience, thereby facilitating high test scores.

Intermittent microclimate cooling during exercise-heat stress in US army chemical protective clothing

The effectiveness of intermittent, microclimate cooling for men who worked in US Army chemical protective clothing (modified mission-oriented protective posture level 3; MOPP 3) was examined. The hypothesis was that intermittent cooling on a 2 min on-off schedule using a liquid cooling garment (LCG) covering 72% of the body surface area would reduce heat strain comparably to constant cooling. Four male subjects completed three experiments at 30 degrees C, 30% relative humidity wearing the LCG under the MOPP 3 during 80 min of treadmill walking at 224 +/- 5 W . m(-2). Water temperature to the LCG was held constant at 21 degrees C. The experiments were; 1) constant cooling (CC); 2) intermittent cooling at 2-min intervals (IC); 3) no cooling (NC). Core temperature increased (1.6 +/- 0.2 degrees C) in NC, which was greater than IC (0.5 +/- 0.2 degrees C) and CC (0.5 +/- 0.3 degrees C) ( p < 0.05). Mean skin temperature was higher during NC (36.1 +/- 0.4 degrees C) than IC (33.7 +/- 0.6 degrees C) and CC (32.6 +/- 0.6 degrees C) and mean skin temperature was higher during IC than CC ( p < 0.05). Mean heart rate during NC (139 +/- 9 b . min(-1)) was greater than IC (110 +/- 10 b . min(-1)) and CC (107 +/- 9 b . min(-1)) ( p < 0.05). Cooling by conduction (K) during NC (94 +/- 4 W . m(-2)) was lower than IC (142 +/- 7 W . m(-2)) and CC (146 +/- 4 W . m(-2)) ( p < 0.05). These findings suggest that IC provided a favourable skin to LCG gradient for heat dissipation by conduction and reduced heat strain comparable to CC during exercise-heat stress in chemical protective clothing.     

The prediction of the wild-type telomerase RNA pseudoknot structure and the pivotal role of the bulge in its formation

In this study, the three-dimensional structure of the wild-type human telomerase RNA pseudoknot was predicted via molecular modeling. The wild-type pseudoknot structure is then compared to the recent NMR solution structure of the telomerase pseudoknot, which does not contain the U177 bulge. The removal of the bulge from the pseudoknot structure results in higher stability and significant reduction of activity of telomerase. We show that the effect of the bulge on the structure results in a significant transformation of the pseudoknot junction region where the starting base pairs are disrupted and unique triple base pairs are formed. We found that the formation of the junction region is greatly influenced by interactions of the U177 bulge with loop residues and rotation of residue A174. Moreover, this is the first study to our knowledge where a structure as complex as the pseudoknot has been solved by purely theoretical methods.     

Towards the implementation of text and discourse theory in computer-assisted textual analysis

Humanities computing (HC) has failed to integrate into its practices many of the key theoretical elements of contemporary text and discourse theory. This has in turn contributed to the marginalization of HC in research and teaching. Outdated theoretical models must be abandoned in order to develop a critical discourse based on the insights of HC. HC projects remain far too attached to micro-analyses and have not developed the theoretical and methodological tools necessary to undertake systemic macro-analyses on the level of discourse. Given that texts are a mixture of determinate and dynamic systems, recent developments in chaos theory may be of help in modelling the interrelationship of these elements at discourse level.Donald Bruce is Associate Professor of Romance Languages at the University of Alberta. His research interests include literary theory, XIXth century French literature, science and literature, and translation. He recently edited an issue ofRecherches Sémiotiques/Semiotic Inquiry on Literature and Ideology and is presently working on a project entitled,The Socio-semiotic Nexus: Jules Vallès and the Discourse of the Commune.