Mycorrhizal fungi mitigate nitrogen losses of an experimental grassland by facilitating plant uptake and soil microbial immobilization

Nitrogen (N) is one of the most limited nutrients of terrestrial ecosystems, whose losses are prevented in tightly coupled cycles in finely tuned systems. Global change-induced N enrichment through atmospheric deposition and application of vast amounts of fertilizer are now challenging the terrestrial N cycle. Arbuscular mycorrhizal fungi (AMF) are known drivers of plant-soil nutrient fluxes, but a comprehensive assessment of AMF involvement in N cycling under global change is still lacking. Here, we simulated N enrichment by fertilization (low/high) in experimental grassland microcosms under greenhouse conditions in the presence or absence of AMF and continuously monitored different N pathways over nine months. We found that high N enrichment by fertilization decreased the relative abundance of legumes and the plant species dominating the plant community changed from grasses to forbs in the presence of AMF, based on aboveground biomass. The presence of AMF always maintained plant N:phosphorus (P) ratios between 14 and 16, no matter how the soil N availability changed. Shifts in plant N:P ratios due to the increased plant N and P uptake might thus be a primary pathway of AMF altering plant community composition. Furthermore, we constructed a comprehensive picture of AMF’s role in N cycling, highlighting that AMF reduced N losses primarily by mitigating N leaching, while N₂O emissions played a marginal role. Arbuscular mycorrhizal fungi reduced N₂O emissions directly through the promotion of N₂O-consuming denitrifiers. The underlying mechanism for reducing N leaching is mainly the AMF-mediated improved nutrient uptake and AMF-associated microbial immobilization. Our results indicate that synergies between AMF and other soil microorganisms cannot be ignored in N cycling and that the integral role of AMF in N cycling terrestrial ecosystems can buffer the upcoming global changes.     

Current models broadly neglect specific needs of biodiversity conservation in protected areas under climate change

Background  

Protected areas are the most common and important instrument for the conservation of biological diversity and are called for under the United Nations' Convention on Biological Diversity. Growing human population densities, intensified land-use, invasive species and increasing habitat fragmentation threaten ecosystems worldwide and protected areas are often the only refuge for endangered species. Climate change is posing an additional threat that may also impact ecosystems currently under protection. Therefore, it is of crucial importance to include the potential impact of climate change when designing future nature conservation strategies and implementing protected area management. This approach would go beyond reactive crisis management and, by necessity, would include anticipatory risk assessments. One avenue for doing so is being provided by simulation models that take advantage of the increase in computing capacity and performance that has occurred over the last two decades.     

Response of vascular epiphyte diversity to different land-use intensities in a neotropical montane wet forest

Although vascular epiphytes contribute substantially to the biodiversity of tropical montane forests, it is unclear how their diversity and community composition is affected by forest alteration. We studied the response of vascular epiphyte assemblages to different intensities of land-use in a montane wet forest of northeastern Ecuador: (1) unmanaged mature forest; (2) mature forest with mid- and understorey opened for cattle grazing; and (3) isolated remnant trees in cattle pastures. The numbers of individuals and species of epiphytes per host tree did not differ significantly between land-use types, neither did total epiphyte species richness (n = 30 trees). However, total species richness of pteridophytes was significantly lower on isolated remnant trees compared to unmanaged forest, whereas several taxa rich in xerotolerant species (Bromeliaceae, Orchidaceae, Piperaceae) exhibited the opposite trend. An analysis of floristic composition using ordination (NMS) and randomisation techniques (MRPP) showed that epiphyte assemblages on isolated remnant trees were significantly distinct from unmanaged forest while managed forest was intermediate between those two vegetation types. Ordination analysis further indicated reduced floristic heterogeneity in disturbed habitats. These results suggest considerable, rapid species turnover since land-use change 6 years prior to study, with pteridophytes being replaced by more xerotolerant taxa. We attribute this floristic turnover primarily to changes in microclimate towards higher levels of light and desiccation stress associated with forest disturbance. Our results support the notion that community composition offers a more sensitive indicator of human disturbance than species richness.     

Bovine herpesvirus 5 BICP0 complements the bovine herpesvirus 1 homolog

Bovine herpesvirus 1 (BoHV-1) and BoHV-5 are closely related (82% amino acid identity) but differ strongly in neuropathogenesis. The immediate-early gene for BICP0 is less conserved (70% amino acid identity) and may contribute to a dissimilar phenotype. A peculiar difference is a guanosine hexamer in the BICP0-1 gene which aligns with only five guanosines in the BICP0-5 gene and therefore results in a frameshift in the latter open reading frame. Thus, the C-terminal amino acid sequence (residues 643–676 of BICP0-1 vs. 655–720 of BICP0-5) is completely different. We introduced the BICP0-5 frameshift into the BoHV-1 genome cloned as a bacterial artificial chromosome (BoHV-1 BAC) using the Red recombination system with galK selection and counterselection. Transfection of MDBK cells with the resulting BAC produced recombinant virus that replicated like wild type BoHV-1 in vitro. Attempts to exchange the entire BICP0-1 gene by the BoHV-5 homolog using the same approach failed repeatedly. Therefore, we cotransfected purified BICP0⁻/galK⁺-BoHV-1 BAC DNA with a recombination plasmid coding for BICP0-5 with or without a HA tag into MDBK cells. BoHV-1 recombinants expressing the respective proteins were characterized. In vitro, all recombinants grew to similar titers as the parental viruses, which demonstrates that BICP0-5 compensates for the growth defect of BICP0⁻/galK⁺-BoHV-1 and functionally complements BICP0-1 of BoHV-1. We conclude that BICP0 may be suitable to positively select BoHV-1 recombinants with deletions or insertions of additional genes of interest.     

Spatio-temporal dynamics of bacterial communities associated with two plant species differing in organic acid secretion: A one-year microcosm study on lupin and wheat

Plants are generally assumed to influence the surrounding soil microflora through rhizodeposition. However, the role of rhizodeposits, and especially organic acids, in structuring the bacterial communities is still poorly understood. In this study, we asked the question whether plants differing in organic acid secretion have a different impact on the soil bacterial communities, and if this is the case, to which extent this impact is due to different organic acid concentrations in the rhizosphere. To investigate this question, we compared white lupin and wheat. The former is a high organic acid-secreting species, while the latter secretes only low amounts of carboxylates. We grew the plants in large microcosms including root-free control compartments for one year (replanted every second month) and analyzed the spatio-temporal changes in soil ATP concentrations, as well as in diversity and structure of bacterial communities (using DNA- and RNA-based DGGE) along a root-soil gradient after two, six and twelve month's cultivation. Our results showed: i) that white lupin and wheat differed in their impact on soil ATP concentrations and on the structure of root bacterial communities; ii) that cultivation time was a key factor in explaining the observed differences in all the parameters studied; and iii) that the amounts of organic acids accounted for a significant proportion (15%) of the variability within root active communities. These results indicate that plants influence their associated bacterial communities in a species-specific way and that for communities living in the direct vicinity of roots (rhizoplane-endorhizosphere), a significant part of this influence can be attributed to root-secreted organic acids.     

Quantitative assessment of the fungal contribution to microbial tissue in soil

The fungi-to-bacteria ratio in soil ecological concepts and its application to explain the effects of land use changes have gained increasing attention over the past decade. Four different main approaches for quantifying the fungal and bacterial contribution to microbial tissue can be distinguished: (1) microscopic methods, (2) selective inhibition, (3) specific cell membrane components and (4) specific cell wall components. In this review, the different methods were compared and we hypothesized that all these approaches result in similar values for the fungal and bacterial contribution to total microbial biomass, activity, and residues (dead microbial tissue) if these methods are evenly reliable for the estimation of fungal biomass. The fungal contribution to the microbial biomass or respiration varied widely between 2 and 95% in different data sets published over the past three decades. However, the majority of the literature data indicated that fungi dominated microbial biomass, respiration or non-biomass microbial residues, with mean percentages obtained by the different methodological approaches varying between 35 and 76% in different soil groups, i.e. arable, grassland, and forest soils and litter layers. Microscopic methods generally gave the lowest average values, especially in arable and grasslands soils. Very low ratios in fungal biomass C-to-ergosterol obtained by microscopic methods suggest a severe underestimation of fungal biomass by certain stains. Relatively consistent ratios of ergosterol to linoleic acid (18:2ω6,9) indicate that both cell membrane components are useful indicators for saprotrophic and ectomycorrhizal fungi. More quantitative information on the PLFA content of soil bacteria and the 16:1ω5 content of arbuscular mycorrhizal fungi is urgently required to fully exploit the great potential of PLFA measurements. The most consistent results have been obtained from the analysis of fungal glucosamine and bacterial muramic acid in microbial residues. Component-specific δ¹³C analyses of PLFA and amino sugars are a promising prospect for the near future.     

Studies on the aroma of five fresh tomato cultivars and the precursors of cis- and trans-4,5-epoxy-(E)-2-decenals and methional

Three tasty (BR-139, FA-624, and FA-612) and two less tasty (R-144 and R-175) fresh greenhouse tomato cultivars, which significantly differ in their flavor profiles, were screened for potent odorants using aroma extract dilution analysis (AEDA). On the basis of AEDA results, 19 volatiles were selected for quantification in those 5 cultivars using gas chromatography-mass spectrometry (GC-MS). Compounds such as 1-penten-3-one, ( E, E)- and ( E, Z)-2,4-decadienal, and 4-hydroxy-2,5-dimethyl-3(2 H)-furanone (Furaneol) had higher odor units in the more preferred cultivars, whereas methional, phenylacetaldehyde, 2-phenylethanol, or 2-isobutylthiazole had higher odor units in the less preferred cultivars. Simulation of the odor of the selected tomato cultivars by preparation of aroma models and comparison with the corresponding real samples confirmed that all important fresh tomato odorants were identified, that their concentrations were determined correctly in all five cultivars, and that differences in concentration, especially of the compounds mentioned above, make it possible to distinguish between them and are responsible for the differential preference. To help elucidate formation pathways of key odorants, labeled precursors were added to tomatoes. Biogenesis of cis- and trans-4,5-epoxy-( E)-2-decenals from linoleic acid and methional from methionine was confirmed.     

Contribution of runoff to incomplete off season soil water refilling in a Mediterranean vineyard

The dynamics of soil water was investigated in a Mediterranean vineyard during the 2003-2007 period in order to identify the inter-seasonal modification of water storage due to intercropping. The intercrop was a mixture of tall fescue and rye grass. Soil water content was measured on 3 m soil profiles (plus one 5 m profile) as was runoff from local stands.Great variations in soil refilling were observed over the years, for both the bare soil and intercrop treatments. The complete refilling occurred once and it was associated with a rise of the water table up to less than 2 m from the soil surface in the low part of the field. During the other years, the wetting front was identified between 1 m and 2.3 m at spring in the bare soil treatment, deeper in the lowest part of the field. The available soil water content at bud-break was influenced by the topography. A higher infiltration was observed in the intercropped treatment. Runoff kinetics was compared to rainfall kinetics in a selection of three rain events differing by duration and intensity. The curve number method was used to perform the analysis of runoff at a 1-day time-step rather than the quarter of an hour time-step of the registrations. With this method, the time limitation of water balance studies for Mediterranean vineyards would be partially removed.     

Resource landscapes and movement strategy shape Queensland Fruit Fly population dynamics

Context

Animal population dynamics are shaped by their movement decisions in response to spatial and temporal resource availability across landscapes. The sporadic availability and diversity of resources can create highly dynamic systems. This is especially true in agro-ecological landscapes where the dynamic interplay of insect movement and heterogeneous landscapes hampers prediction of their spatio-temporal dynamics and population size.

Objectives

We therefore systematically looked at population-level consequences of different movement strategies in temporally-dynamic resource landscapes for an insect species whose movement strategy is slightly understood: the Queensland Fruit Fly (Bactrocera tryoni)

Methods

We developed a spatially-explicit model to predict changes in population dynamics and sizes in response to varying resources across a landscape. We simulated the temporal dynamics of fruit trees as the main resource using empirical fruiting dates. Movement strategies were derived from general principles and varied in directedness of movement and movement trigger.

Results

We showed that temporal continuity in resource availability was the main contributing factor for large and persistent populations. This explicitly included presence of continuous low-density resources such as fruit trees in urban areas. Analysing trapping data from SE Australia supported this finding. We also found strong effects of movement strategies, with directed movement supporting higher population densities.

Conclusions

These results give insight into structuring processes of spatial population dynamics of Queensland Fruit Fly in realistic and complex food production landscapes, but can also be extended to other systems. Such mechanistic understanding will help to improve forecasting of spatio-temporal hotspots and bottlenecks and will, in the end, enable more targeted population management.

     

The risk of ignoring fear: underestimating the effects of habitat loss and fragmentation on biodiversity

Landscape Ecology - Habitat loss and fragmentation threaten species not only through structural landscape changes and resource reduction, but also through modifications to species’...