Dynamic Instrumentation, Performance Monitoring and Analysis of Grid Scientific Workflows

While existing work concentrates on developing QoS models of business workflows and Web services, few tools have been developed to support the monitoring and performance analysis of scientific workflows in Grids. This paper describes novel Grid services for dynamic instrumentation of Grid-based applications, performance monitoring and analysis of Grid scientific workflows. We describe a Grid dynamic instrumentation service that provides a widely accessible interface for other services and users to conduct the dynamic instrumentation of Grid applications during the runtime. We introduce a Grid performance analysis service for Grid scientific workflows. The analysis service utilizes various types of data including workflow graphs, monitoring data of resources, execution status of activities, and performance measurements obtained from the dynamic instrumentation of invoked applications, and provides a rich set of functionalities and features to support the online monitoring and performance analysis of scientific workflows. Workflows and their relevant information including performance metrics are stored and utilized for comparing the performance of constructs of different workflows and for supporting multi-workflow analysis. The work described in this paper is supported in part by the Austrian Science Fund as part of the Aurora Project under contract SFBF1104 and by the European Union through the IST-2002-511385 project K-WfGrid.     

Semivolatile organic compounds in window films from lower Manhattan after the September 11th World Trade Center attacks

The September 11th World Trade Center (WTC) terrorist attacks resulted in the large-scale release of contaminants that were deposited on the environment of New York City (NYC). Six weeks after the attacks, samples of an organic film on window surfaces were collected and analyzed for polybrominated diphenyl ethers (PBDE), polychlorinated biphenyls (PCB), polychlorinated naphthalenes (PCN), polycyclic aromatic hydrocarbons (PAH), and organochlorine pesticides (OCPs). Concentrations dropped by an order of magnitude within 1 km of the WTC and reached background concentrations by 3.5 km. Concentrations within 1 km of the WTC averaged 3280 ng/m2 for sigmaPBDE, 900 ng/m2 for sigmaPCB, 33 ng/m2 for sigmaPCN, and 77100 ng/m2 for sigmaPAH. Congener profiles of the sites nearest the WTC suggested a combination of combustion and evaporative sources of all compounds, whereas the background sites exhibited profiles consistent with evaporative sources. PBDE profiles showed enrichment in lower molecular weight congeners near the WTC, suggesting that these congeners were formed as a result of the combustion conditions. Homologue fractions of PCN combustion markers were approximately 2-9 times greater at near WTC sites compared to background NYC. Gas-phase air concentrations were back-calculated from measured film concentrations using the film-air partition coefficient (KFA), and calculated air concentrations followed spatial trends observed in films.     

Dielectric barrier discharge treatments at atmospheric pressure for wood surface modification

In this research, the effect of dielectric barrier discharge on mechanically manufactured (sawn, planed or polished) wood surfaces is investigated. The experiments have shown that the best hydrophilia is obtained with a cold plasma discharge in air under atmospheric pressure. Other gases such as helium, nitrogen, and argon have been tested, too. Changes of the wood surface properties were determined by absorption of water and contact angle measurements. As a result of a 1 to 20 seconds long exposure to plasma, wood surfaces became hydrophilic. The absorption of water in wood can be changed up to 22 times higher after plasma treatment in air for 20 seconds duration. The fracture strength of glued wood has been increased by 68% after this plasma pretreatment. Using plasma treatment in methane or acetylene wood surfaces are changed to hydrophobic properties. After plasma treatment for 1 min. in a Ar:CH₄=80:20 gas mixture under atmospheric pressure, the absorption of water in wood is 32 times lower than without plasma treatment. As mentioned before, plasma treatment can produce hydrophobic and hydrophilic wood surfaces. But a good homogeneity of the gas discharge is necessary for the plasma treatment of wood.     

Effect of formate and methanol on photoreduction/removal of toxic cadmium ions using TiO2 semiconductor as photocatalyst

Photoreduction/removal of cadmium was studied at pH 7 using TiO₂ Degussa as photocatalyst, and either formate or methanol as hole scavengers. In the absence of organic additives, approximately 60% of cadmium was found to be removed from the solution by adsorption. Addition of formate resulted in the photoreduction of cadmium to its metallic form. No cadmium reduction was observed when methanol was added as the hole scavenger. Zeta potential measurements of the catalyst suspensions and studies on the extent of organic additive adsorption and mineralisation were used to prove the photoreduction process. It was found that the adsorption of both cadmium and the organic hole scavenger is crucial for the photoreduction of cadmium. It is postulated that to be an effective hole scavenger the organic additive needs to be easily photooxidised under an anoxic environment. In addition, the presence of formate radicals could be responsible for the Cd photoreduction.     

Contribution of starter culture to the sensory characteristics of fermented Almagro eggplants

Trial fermentations were performed using three experimental starter cultures with a view to selecting the most appropriate starter for use in the manufacture of Almagro eggplants. The lactic acid bacterial strains used in the starters had previously been isolated from spontaneous fermentations. The combined action of the obligate heterofermentative species Lactobacillus brevis and the facultative heterofermentative species L. plantarum yielded Almagro eggplants with sensory properties preferred by panelists. Conversely, another obligate heterofermentative species, namely, L. fermentum, present in certain starter formulations tested, appeared to encounter difficulty growing during fermentation and exerted little influence on the sensory characteristics of the eggplants produced.     

Role of plasticity on interface crack initiation from a free edge and propagation in a nano-component

In order to elucidate the role of plasticity on interface crack initiation from a free edge and crack propagation in a nano-component, delamination experiments were conducted by a proposed nano-cantilever bend method using a specimen consisting of ductile Cu and brittle Si and by a modified four-point bend method. The stress fields along the Cu/Si interface at the critical loads of crack initiation and crack propagation were analyzed by the finite element method. The results reveal that intensified elastic stresses in the vicinity of the interface edge and the crack tip are very different, although the Cu/Si interface is identical in both experiments. The plasticity of Cu was then estimated on the basis of the nano-cantilever deflection measured by in situ transmission electron microscopy. The plasticity affects the stress fields; the normal stress near the interface edge is intensified while that near the crack tip is much reduced. Both the elasto-plastic stresses are close to each other in the region of about 10 nm. This suggests that the local interface fracture, namely, the crack initiation at the interface edge and the crack propagation along the interface, is governed by elasto-plastic normal stress on the order of 10 nm.     

Lipid-induced organization of a primary amphipathic peptide: a coupled AFM-monolayer study

To better understand the nature of the mechanism involved in the membrane uptake of a vector peptide, the interactions between dioleoylphosphatidylcholine and a primary amphipathic peptide containing a signal peptide associated with a nuclear localization sequence have been studied by isotherms analysis of mixed monolayers spread at the air-water interface. The peptide and the lipid interact through strong hydrophobic interactions with expansion of the mean molecular area that resulted from a lipid-induced modification of the organization of the peptide at the interface. In addition, a phase separation occurs for peptide molar fraction ranging from about 0.08 to 0.4 Atomic force microscopy observations made on transferred monolayers confirm the existence of phase separation and further reveal that mixed lipid-peptide particles are formed, the size and shape of which depend on the peptide molar fraction. At low peptide contents, round-shaped particles are observed and an increase of the peptide amount, simultaneously to the lipidic phase separation, induces morphological changes from bowls to filamentous particles. Fourier transform infrared spectra (FTIR) obtained on transferred monolayers indicate that the peptide adopts a beta-like structure for high peptide molar fractions. Such an approach involving complementary methods allows us to conclude that the lipid and the peptide have a nonideal miscibility and form mixed particles which phase separate.     

From human to humanoid locomotion—an inverse optimal control approach

The purpose of this paper is to present inverse optimal control as a promising approach to transfer biological motions to robots. Inverse optimal control helps (a) to understand and identify the underlying optimality criteria of biological motions based on measurements, and (b) to establish optimal control models that can be used to control robot motion. The aim of inverse optimal control problems is to determine—for a given dynamic process and an observed solution—the optimization criterion that has produced the solution. Inverse optimal control problems are difficult from a mathematical point of view, since they require to solve a parameter identification problem inside an optimal control problem. We propose a pragmatic new bilevel approach to solve inverse optimal control problems which rests on two pillars: an efficient direct multiple shooting technique to handle optimal control problems, and a state-of-the art derivative free trust region optimization technique to guarantee a match between optimal control problem solution and measurements. In this paper, we apply inverse optimal control to establish a model of human overall locomotion path generation to given target positions and orientations, based on newly collected motion capture data. It is shown how the optimal control model can be implemented on the humanoid robot HRP-2 and thus enable it to autonomously generate natural locomotion paths.     

Batch treatment of liquid fraction of pig slurry by intermittent aeration: process simulation and microbial community analysis

BACKGROUND: Manure treatment in intensive livestock farming is required to reduce the risk of negative environmental impacts by nitrogen disposal. Biological removal through intermittent aeration in a single bioreactor is a suitable method for this purpose. The characteristic operation based on the alternation of oxic/anoxic phases confers these systems with certain particularities in terms of process modelling and of understanding the microbial interactions. RESULTS: The performance of a sequencing batch reactor (SBR) treating raw liquid fraction of pig slurry (LFPS) under loading rates of 0.13 g N L^?1 d^?1 was studied. Three different aeration strategies were applied: (1) constant airflow; (2) dissolved oxygen (DO) set‐point; and (3) DO‐based real‐time control. The comparatively low aeration intensity applied throughout the third strategy resulted in the process being performed mainly via nitrite, implying a reduction on the requirements of organic carbon and oxygen. However, a decrease in the nitrification rate was observed under those conditions. Experimental results were satisfactorily simulated by a mathematical model focused on organic carbon and nitrogen removal. Microbial community structure analysis through denaturing gradient gel electrophoretic profiling of 16S rDNA genes showed that the aeration exerted a strong influence on the dominant microbial populations. The presence of the ammonia‐oxidizing species Nitrosomonas europaea, and of denitrifying bacteria related to Thauera sp. and Ralstonia sp., was detected in the strategy at low DO. CONCLUSION: Dependence of model statement and parameter values on the bioreactor operational patterns and piggery wastewater composition was evidenced. Oxygen limitation was responsible for a significant microbial shift in SBR treating LFPS. Copyright © 2009 Society of Chemical Industry