Dispensing Precision for the SciClone™ Automated Liquid Handling Workstation for 96-Channel Pipetting

One of the first steps in drug discovery involves identification of novel compounds that interfere with therapeutically relevant biological processes.

Identification of ‘lead’ compounds in all therapeutic areas included in a drug discovery program requires labor-intensive evaluation of numerous samples in a battery of therapy targeted biological assays. To accelerate the identification of ‘lead’ compounds, Janssen Research Foundation (JRF) has developed in the past an automated high throughput screening (HTS) based on the unattended operation of a custom Zymark tracked robot system. Automation of enzymatic and cellular assays was realized with this system adapted to the handling of microtiter plates. The microtiter plate technology is the basis of our screening. All compounds within our chemical library are stored and distributed in micronic tube racks or microtiter plates for screening. An efficient in-house developed mainframe based laboratory information management system supported all screening activities. Our experience at JRF has shown that the preparation of test compounds and serial dilutions has been a rate-limiting step in the overall screening process. In order to increase compound throughput, it was necessary both to optimize the robotized assays and to automate the compound supply processes. In HTS applications, one of the primary requirements is highly accurate and precise pipetting of microliter volumes of samples into microplates. The SciClone™ is an automated liquid handling workstation capable of both 96- and 384-channel high precision pipetting. For high throughput applications, the SciClone™ instrumentation is able to pipette a variety of liquid solutions with a high degree of accuracy and precision between microplates (inter-plate variability) and tip-to-tip (intra-plate variability) within a single plate. The focus of this presentation is to review the liquid handling performance of the SciCloneTM system as a multipurpose instrument for pipetting aqueous or organic solutions, and virus suspensions into 96- and 384-well microplates. The capabilities of the system and the resulting benefits for our screening activities will be described.     

Understanding the outsourcing learning curve: A longitudinal analysis of a large Australian company

Outsourcing continues to capture the attention of researchers as more companies move to outsourcing models as part of their business practice. Two areas frequently researched and reported in the literature are the reasons why a company decides to outsource, and outsourcing success factors. This paper describes an in-depth, longitudinal case study that explores both the reasons why the company decided to outsource and factors that impact on success. The paper describes how Alpha, a very large Australian communications company, approached outsourcing and how its approach matured over a period of 9 years. The paper concludes that although a number of reasons are proposed for a company's decision to outsource, lowering costs was the predominant driver in this case. We also describe other factors identified as important for outsourcing success such as how contracts are implemented, the type of outsourcing partner arrangement, and outsourcing vendor capabilities.

Visual signatures in video visualization

Video visualization is a computation process that extracts meaningful information from original video data sets and conveys the extracted information to users in appropriate visual representations. This paper presents a broad treatment of the subject, following a typical research pipeline involving concept formulation, system development, a path-finding user study, and a field trial with real application data. In particular, we have conducted a fundamental study on the visualization of motion events in videos. We have, for the first time, deployed flow visualization techniques in video visualization. We have compared the effectiveness of different abstract visual representations of videos. We have conducted a user study to examine whether users are able to learn to recognize visual signatures of motions, and to assist in the evaluation of different visualization techniques. We have applied our understanding and the developed techniques to a set of application video clips. Our study has demonstrated that video visualization is both technically feasible and cost-effective. It has provided the first set of evidence confirming that ordinary users can be accustomed to the visual features depicted in video visualizations, and can learn to recognize visual signatures of a variety of motion events.     

Finite Volume Time Domain modelling of microwave breakdown and plasma formation in a metallic aperture

The modelling of plasma formation during microwave breakdown is a difficult task because of the strong non-linear coupling between Maxwell?s equations and plasma equations, and of the large plasma density gradients that form during breakdown. An original Finite Volume Time Domain (FVTD) method has been developed to solve Maxwell?s equations coupled with a simplified fluid plasma model and is described in this paper. This method is illustrated with the study of the shielding of a metallic aperture by the plasma generated by an incident high power electromagnetic wave. Typical results obtained with the FVTD method for this shielding problem are shown.     

Incremental Feature Selection

Feature selection is a problem of finding relevant features. When the number of features of a dataset is large and its number of patterns is huge, an effective method of feature selection can help in dimensionality reduction. An incremental probabilistic algorithm is designed and implemented as an alternative to the exhaustive and heuristic approaches. Theoretical analysis is given to support the idea of the probabilistic algorithm in finding an optimal or near-optimal subset of features. Experimental results suggest that (1) the probabilistic algorithm is effective in obtaining optimal/suboptimal feature subsets; (2) its incremental version expedites feature selection further when the number of patterns is large and can scale up without sacrificing the quality of selected features.     

Impact of Ethylene Oxide Butylene Oxide Copolymers on the Composition and Friction of Silicone Hydrogel Surfaces

The surface chemical compositions of three types of silicone hydrogel contact lenses, PureVision^® (balafilcon A), ACUVUE^® OASYS^® (senofilcon A), and O₂OPTIX^® (lotrafilcon B), were analyzed using X-ray photoelectron spectroscopy prior to and following treatment in a test solution of diblock copolymer of poly(ethylene oxide) and poly(butylene oxide) (EO–BO). Prior to treatment, differences in surface elemental compositions of the lenses were found to reflect known bulk compositions and/or respective surface treatments. Following solution treatment, surface chemical modifications were apparent in balafilcon A and lotrafilcon B, especially in the distribution of chemical functionalities present at the surface. Only modest changes in surface composition were observed for the senofilcon A material. Atomic force microscopy (AFM) was employed to evaluate the surface topography and frictional properties of the lenses prior to and following similar solution treatments. AFM measurements in saline revealed large disparities between the coefficients of friction of the three lenses, with balafilcon A and lotrafilcon B exhibiting coefficients of friction approximately five times greater than that of senofilcon A. Lens surface treatment with the diblock copolymer test solution produced a significant reduction in the coefficients of friction of the two lenses exhibiting higher friction, yet only a small reduction in friction was observed for senofilcon A lens. Together, these results depict a strong correlation between the surface chemistry and frictional response of the lens systems as they relate to solution treatment with this specific diblock copolymer.     

Relations between in-treatment and follow-up abstinence among cocaine-dependent homeless persons in three clinical trials.

Clinical trials with cocaine-dependent outpatients have found a strong relation between in-treatment and follow-up abstinence, and the strength of this relation is constant across treatment conditions with variable efficacy in generating abstinence. The authors conducted secondary analyses of data from 3 clinical trials to determine whether this relation generalizes to cocaine-dependent homeless persons. The 3 trials (total N = 543) were conducted in a community health care facility for homeless people. The 7 treatment arms across the 3 trials were combinations of day treatment, abstinence-contingent housing, and vocational training. Drug use was measured with urine toxicology testing. Consecutive weeks of abstinence during treatment were strongly related to abstinence at the 12-month follow-up, whether or not missing 12-month data were included in the analysis. The treatment arms differed in their efficacy in generating abstinence, but the relation between in-treatment and follow-up abstinence did not differ across treatment arms. These results replicate earlier reports of these relations and extend them to a population of homeless people. The lack of differences between treatment arms in the in-treatment–follow-up abstinence relation implies that that relation is independent of the treatment-specific intervention components that generate group differences in abstinence. (PsycINFO Database Record (c) 2010 APA, all rights reserved)     

Chemikalienfreie Bekämpfung von Holzschädlingen durch dielektrische Erwärmung mit Radiowellen und Mikrowellen

Thermal pest control requires long treatment times due to the low thermal conductivity of wood and may lead to the formation of cracks. Here, the thermal treatment with radio waves as well as microwaves has been studied. The direct dielectric heating has the advantage of a good homogeneity. The obtained temperature profiles for radio waves were more homogeneous compared to microwaves. Detailed studies showed that elimination of pests was not related to the application of the electromagnetic field itself, but due to the temperature increase.     

Molecular cloning and characterization of a thermostable α-amylase exhibiting an unusually high activity

An α-amylase gene was cloned from the thermophilic bacterium Bacillus subtilis isolated from Indonesian oil palm shell waste. The gene expressed an extracellular enzyme. Optimal hydrolysis conditions for the enzyme were 70°C and pH 6.0. The specific activity of the enzyme was 16.0 kU per mg of protein, which was higher than for other thermostable amylases. Hydrolytic products of the enzyme using starch and glycogen were mainly maltohexaose and maltopentaose. The enzyme had a K _m value of 0.099 mg/mL for amylopectin, more than 10 times lower than for amylose. The catalytic efficiency of the enzyme using amylopectin was 39,200 mL/mg·s and was 3,270 mL/mg·s using amylose. The enzyme liquefied corn starch at pH 5.0, which was successfully converted to glucose using commercial glucoamylase and pullulanase without pH adjustment. The enzyme has advantages for industrial applications.     

Exploiting Varying Resource Requirements in Wavelet-based Applications in Dynamic Execution Environments

In the context of future dynamic applications, systems will exhibit unpredictably varying platform resource requirements. To deal with this, they will not only need to be programmable in terms of instruction set processors, but also at least partial reconfigurability will be required. In this context, it is important for applications to optimally exploit the memory hierarchy under varying memory availability. This article presents a mapping strategy for wavelet-based applications: depending on the encountered conditions, it switches to different memory optimized instantations or localizations, permitting up to 51% energy gains in memory accesses. Systematic and parameterized mapping guidelines indicate which localization should be selected when, for varying algorithmic wavelet parameters. The results have been formalized and generalized to be applicable to more general wavelet-based applications.