Development of a PCR assay for the detection of nifH and nifD genes in indigenous photosynthetic bacteria

Molybdenum (Mo) nitrogenases consist of two components: dinitrogenase reductase (encoded by nifH) and the dinitrogenase or MoFe protein (encoded by nifDK). Nitrogenase enzyme of photosynthetic bacteria is responsible for hydrogen production. Therefore, primers were designed for the nitrogenase gene only. In this study, two primers (ND and NH) were designed after comparative genomic analysis of nifH and nifD gene sequences from public databases. The designed primers were used for the amplification of nifH and nifD genes to detect nitrogenase genes in photosynthetic bacteria. Initial detection was done using a monoplex Polymerase Chain Reactions (PCRs) followed by optimization of the PCR protocols. Subsequently, a duplex PCR was designed for amplification and detection of nifH and nifD genes in indigenous photosynthetic bacteria. Evaluation of the duplex PCR on six samples isolated from Palm Oil Mill Effluent (POME) showed that only four isolates contained both the nifH and nifD genes, indicating that these isolates were potential hydrogen-producing bacteria. PCR detection provides a rapid and efficient pre-identification of potential photosynthetic bacterial hydrogen producers.     

Effects of stratification on chloramine decay in distribution system service reservoirs

Water quality in chloraminated distribution systems is affected by microbial activity, particularly due to nitrifiers that accelerate chloramine decay. In summer, continuous thermal stratification increases retention time and lowers chloramine residual in some parts of a system service reservoir (tank), relative to fully mixed conditions. According to temperature and chemical indicators, cooling in winter destratifies these reservoirs naturally. Traditional (chemical) indicators of nitrification also suggest that destratification occurs with respect to microbiological activity. In contrast, the microbial decay factor (F_m) method, which separates microbiological and chemical decay in bulk water, identifies strong microbial stratification, even in winter. F_m can also be used to predict the exacerbated loss of chloramine residual in the following summer, which enables early intervention by system managers to minimise such loss, and so maintain an adequate residual through the distribution system.     

Synthesis,characterization and properties of photoresponsive polymers comprising photocrosslinkable pendant chalcone moieties

New methacrylate monomers, namely 4‐methacryloyloxyphenyl‐4′‐fluorostyryl ketone and 4‐methacryloyloxyphenyl‐4′‐ethylstyryl ketone comprising a free radical polymerizable group and a photocrosslinkable group, were synthesized by reacting the respective hydroxychalcones with methacryloyl chloride in the presence of triethylamine. The monomers were polymerized in the presence of ethyl methyl ketone (EMK) at 70 °C using benzoyl peroxide as the initiator. The chemical structures were characterized using various spectroscopic techniques: ultraviolet, Fourier transform infrared, ¹H NMR and ¹³C NMR. The thermal stability of the polymers was studied using thermogravimetric analysis in nitrogen atmosphere. Differential scanning calorimetry was used to determine the glass transition temperature of the homopolymers. Photocrosslinking of the synthesized homopolymers was investigated in solution. The two homopolymers were crosslinked within 10–15 min. After crosslinking, the homopolymers were insoluble in the same solvent. Copyright © 2006 Society of Chemical Industry     

Structure and Composition of Au–Cu and Pd–Cu Bimetallic Catalysts Affecting Acetylene Reactivity

Au–Cu and Pd–Cu bimetallic model catalysts were prepared on native SiO₂/Si(100) substrate under ultra high vacuum (UHV) by employing buffer layer assisted growth procedure with amorphous solid water as the buffer material. The effect of the bimetallic nanoclusters (NCs) surface composition and morphology on their chemical reactivity has been studied with acetylene decomposition and conversion to ethylene and benzene as the chemical probe. It was found that among the Au–Cu NCs compositions, Au_0.5Cu₃ NCs revealed outstanding catalytic selectivity towards ethylene formation. These NCs were further characterized by employing TEM, XPS and HAADF-STEM coupled EDX analysis. With CO molecule as a probe, CO temperature programmed desorption has been used to investigate the distribution of gold on the top-most surface of the supported clusters. Surface segregation at high relative elemental fraction of gold leads to a decreased activity of the Au–Cu NCs towards ethylene formation. In contrast to the Au–Cu NCs, the Pd–Cu bimetallic system reveals reduced sensitivity to the relative elemental composition with respect to selectivity of the acetylene transformation toward ethylene formation. On the other hand, remarkable activity towards benzene formation has been observed at elemental composition of Cu₃Pd, at comparable rates to those for ethylene formation on clean Pd NCs.     

Synthesis and characterization of Zr4+, La3+ and Ce3+ doped mesoporous TiO2: evaluation of their photocatalytic activity

Sol-gel method was used to synthesize Zr(4+), La(3+) and Ce(3+) doped mesoporous TiO(2) materials with different weight percentage (0.5, 1.0, 2.0 and 3.0 wt%) using triblock copolymer as the structure directing template in ethanol/water medium. Characterization revealed the isomorphic substitution of Zr(4+) ion into the lattice of TiO(2), and surface binding nature of La(3+) and Ce(3+) ions on mesoporous TiO(2). Microscopic examination confirmed the surface adsorption of foreign ion which could alter the particle morphology. The size of the particles was less than 20 nm. Photocatalytic activity of metal ions doped mesoporous TiO(2) was evaluated using aqueous alachlor as a model pollutant. It was found that 1 wt% Ce(3+) doped mesoporous TiO(2) exhibited higher activity than pure and other metal ions doped mesoporous TiO(2). The change of oxidation state of Ce(3+) is suggested to be the cause for enhanced photocatalytic activity.     

Localization of a domain in the FimH adhesin of Escherichia coli type 1 fimbriae capable of receptor recognition and use of a domain-specific antibody to confer protection against experimental urinary tract infection

The FimH subunit of type 1-fimbriated Escherichia coli has been implicated as an important determinant of bacterial adherence and colonization of the urinary tract. Here, we sought to localize the functionally important domain(s) within the FimH molecule and to determine if antibodies against this domain would block adherence of type 1-fimbriated E. coli to the bladder mucosa in situ and in vivo in an established mouse model of cystitis. We generated translational fusion proteins of disparate regions of the FimH molecule with an affinity tag MalE, and tested each of the fusion products in vitro for functional activity. The minimum region responsible for binding mouse bladder epithelial cells and a soluble mannoprotein, horseradish peroxidase, was contained within residues 1-100 of the FimH molecule. We validated and extended these findings by demonstrating that antibodies directed at the putative binding region of FimH or at synthetic peptides corresponding to epitopes within the binding domain could specifically block type 1 fimbriae-mediated bacterial adherence to bladder epithelial cells in situ and yeast cells in vitro. Next, we compared the ability of mice passively immunized intraperitoneally with antisera raised against residues 1-25 and 253-264 of FimH or 1-13 of FimA to resist bladder colonization in vivo after intravesicular challenge with type 1-fimbriated E. coli. Only the antibody directed at the putative binding region of FimH (anti- s-FimH1-25) significantly reduced E. coli bladder infections in the experimental mouse model of urinary tract infections. Similar results were obtained when the mice were actively immunized with synthetic peptides corresponding to residues 1-25 and 253-264 of FimH or 1-13 of FimA. The mechanism of protection was attributed, at least in part, to inhibition of bacterial adherence to the bladder surface by s-FimH1-25-specific antibody molecules that had filtered through the kidneys into the urine. The level of FimH antibodies entering the bladder from the circulatory system of the immunized mice was found to be markedly enhanced upon bacterial challenge. The potential broad spectrum activity of the protective FimH antibody was indicated from its serologic cross-reactivity with various urinary tract bacterial isolates bearing type 1 fimbriae. These findings could be relevant in the design of an efficacious and broadly reactive FimH vaccine against urinary tract infections.     

Digital processing of mechanical transient response signals—Digital filter approach

The primary aim of this paper is to bring to the attention of shock and vibration engineers the advantages of using digital filters for processing transient response signals. Specifically, the development of reliable high pass digital filters to remove the low frequency components in the acquired acceleration signals so as to obtain valid velocity and displacement-time records, is presented. It is concluded that the non-recursive filters are well suited for mechanical engineering transient response applications. The viability of the non-recursive digital filters for the intended application is established with the use of acceleration signals obtained from a laboratory shock test. Also as a part of this investigation, a set of user-friendly, computer programs for filter design and filtering are developed and implemented.     

Immunosuppressive therapy with microemulsion cyclosporine A shortens the hospitalization of pediatric liver transplant recipients

Lipopolysaccharide (LPS) from S. typhimurium on exposure to gamma-radiation resulted in decrease in toxicity and was less mitogenic, Silver stained profiles of irradiated LPS on polyacrylamide gels revealed complete loss of its heteropolysaccharides which was confirmed further by analysing lipid A and LPS from Salmonella minnesota Re mutants on SDS-PAGE. Glucosamine and 2-keto 3-deoxy-octonate(Kdo) contents were significantly decreased on treatment. Lipid A obtained by removal of heteropolysaccharides from LPS was less toxic on exposure to gamma radiations.