The scaling of animal space use

Space used by animals increases with increasing body size. Energy requirements alone can explain how population density decreases, but not the steep rate at which home range area increases. We present a general mechanistic model that predicts the frequency of interaction, spatial overlap, and loss of resources to neighbors. Extensive empirical evidence supports the model, demonstrating that spatial constraints on defense cause exclusivity of home range use to decrease with increasing body size. In large mammals, over 90% of available resources may be lost to neighbors. Our model offers a general framework to understand animal space use and sociality.     

The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism

Diatoms are unicellular algae with plastids acquired by secondary endosymbiosis. They are responsible for approximately 20% of global carbon fixation. We report the 34 million-base pair draft nuclear genome of the marine diatom Thalassiosira pseudonana and its 129 thousand-base pair plastid and 44 thousand-base pair mitochondrial genomes. Sequence and optical restriction mapping revealed 24 diploid nuclear chromosomes. We identified novel genes for silicic acid transport and formation of silica-based cell walls, high-affinity iron uptake, biosynthetic enzymes for several types of polyunsaturated fatty acids, use of a range of nitrogenous compounds, and a complete urea cycle, all attributes that allow diatoms to prosper in aquatic environments.     

The in vitro effects of proxymetacaine, fluorescein, and fusidic acid on real-time PCR assays used for the diagnosis of Feline herpesvirus 1 and Chlamydophila felis infections

Purpose To investigate the possible inhibition of qPCR assays used for the diagnosis of ocular infections in cats by proxymetacaine, fluorescein, and fusidic acid, which are commonly used in veterinary ophthalmology. Methods Fluorescein, proxymetacaine, and fusidic acid were tested for possible inhibition of a triplex qPCR assay designed to detect Chamydophila felis, Feline herpesvirus 1 (FHV‐1), and the feline 28S ribosomal DNA (28S rDNA) gene by comparing threshold cycle (C_t) values of samples with and without the three products. A second experiment was carried out to measure the effects of various dilutions of fusidic acid. Results No statistically significant differences were detected between the C. felis, FHV‐1, and 28S rDNA C_t values with and without proxymetacaine or fluorescein. However, there was a statistically significant increase in FHV‐1 (P < 0.01), C. felis (P < 0.01), and 28S rDNA (P < 0.05) C_t values when fusidic acid was used. When dilutions of fusidic acid were tested, the results revealed that only the 1:2 dilution caused a statistically significant increase (P < 0.01) in the FHV‐1 Ct values. Conclusion Proxymetacaine and fluorescein did not interfere with our qPCR assays for the detection of C. felis and FHV‐1. The presence of fusidic acid caused a small inhibitory effect of doubtful clinical significance. In vivo studies are required to establish the clinical relevance of this study and to confirm our findings.     

Gene amplification and insecticide resistance

Pesticide resistance in arthropods has been shown to evolve by two main mechanisms, the enhanced production of metabolic enzymes, which bind to and/or detoxify the pesticide, and mutation of the target protein, which makes it less sensitive to the pesticide. One route that leads to enhanced metabolism is the duplication or amplification of the structural gene(s) encoding the detoxifying enzyme, and this has now been described for the three main families (esterases, glutathione S-transferases and cytochrome P450 monooxygenases) implicated in resistance. More recently, a direct or indirect role for gene duplication or amplification has been described for target-site resistance in several arthropod species. This mini-review summarises the involvement of gene duplication/amplification in the insecticide/acaricide resistance of insect and mite pests and highlights recent developments in this area in relation to P450-mediated and target-site resistance.     

Applying evidence-based practice in conservation management: Lessons from the first systematic review and dissemination projects

Lack of systematic evaluation of the effectiveness of conservation practices has hindered advances in scientific management of biodiversity. Development of an evidence-based framework of the kind used in the health services has been advocated as an approach to address this problem. Here we report on and evaluate the first two ecological systematic reviews undertaken using this framework. The subjects were the effectiveness of burning as a conservation intervention for UK sub-montane, dry dwarf shrub heaths (heath review) and blanket bog (bog review). Systematic search yielded 13 data sets from seven ‘heath’ articles and 11 data sets from eight ‘bog’ articles. Data from the heath review were of sufficient quality to enable meta-analysis whereas data from the bog review was synthesised by “vote counting”. Meta-analysis of the heath data indicates that floristic diversity is variable, particularly in early post-fire successional sequences, but older stands experienced significantly greater loss of diversity than younger stands. The bog review indicates that there are no consistent changes in floristic composition in response to burning. The evidence-base for upland management by burning is insufficient to generate robust management recommendations highlighting the necessity for further work. Feedback from the dissemination of the reviews provided valuable lessons for future reviews in terms of stakeholder involvement in question formulation and the balance between a reductionist and holistic approach. Systematic reviews are appropriate tools for conservation management and formalise the information available based on the weight of evidence. Evidence will commonly be lacking in many areas of conservation biology and the evidence-based framework effectively exposes this situation in a way that can determine requirements for needs-led research.     

Comparison of accelerator mass spectrometry with gas chromatography for the determination of pesticide residues in individual items in the diets of wild birds and mammals

Methods to refine the assessment of exposure of wild birds and mammals to pesticides required measurement of pesticide residues in very small samples of their diets. Sample sizes were in the 1-100 mg range, and the target residue for measurement was 0.01 mg/kg. Gas chromatography-mass spectrometry (GC-MS) with large volume injection was compared with the use of an accelerator mass spectrometer (AMS) to measure residues of pesticide labeled at near-background levels with carbon-14. The GC-MS method was able to detect residues down to 0.1 ng per item of diet, and the AMS detected the radiolabel down to 1 mBq (0.06 disintegration per minute, 1 ng of pesticide at the specific activity used) per sample. The target residue level was achieved by the GC-MS method for samples down to 10 mg. The GC method appeared to be best suited to monitoring residues in field studies, and the AMS shows great potential for use in laboratory experiments concerning pesticide degradation.     

Expectations for population growth at new breeding locations for the vulnerable New Zealand sea lion (Phocarctos hookeri) using a simulation model

Management plans for threatened or recovering large vertebrate species that are increasing in population size and range focus on the establishment of viable populations within set temporal limits. New Zealand (Hookers) sea lions (Phocarctos hookeri) were declared a threatened species in 1997, and New Zealand legislation requires that threatened species of marine mammals must be managed to reduce human-induced mortality and achieve a non-threatened status within 20 years. The present breeding distribution of P. hookeri is highly localised, with over 95% of total annual pup production located at Auckland Islands and almost all of the remainder at Campbell Island. Breeding elsewhere has been ephemeral or restricted to <10 adult females. The only recorded sustainable breeding at a new location has been at Otago, South Island, New Zealand. This breeding population consisted of a total of four breeding females in 2002 and is derived from one immigrant female that gave birth to her first pup in the 1993/1994 breeding season. The New Zealand Department of Conservation management plan specifies that to achieve a non-threatened status P. hookeri (1) at Otago must increase in the number of breeding females to ?10, and (2) must establish ?two new breeding locations within the 20-year time frame, each with ?10 breeding females. This study 1) projects the population growth trends at a new location (Otago) to see if it will achieve ?10 breeding females within the legislated time frame, and (2) examines the likelihood that other breeding locations will establish elsewhere given the demographic information available for this species. We present 20 deterministic and three stochastic Leslie matrix model scenarios for female population growth for the initial years following the start of breeding at a new location. Our results indicate that (1) a new breeding population derived from one immigrant female is unlikely to reach 10 breeding females in 20 years; this duration is more likely to be 23-41 years (deterministic models) or 23-26 years (stochastic model), (2) the likelihood of two new sites establishing within 20 years is unquantifiable, but the probability is low, and (3) if the legislated outcome and time limit are not revised in the population management plan, the feasibility and effectiveness of re-locating young females could be investigated.     

Tylosin detection in animal feed by liquid chromatography-tandem mass spectrometry with enzymatic hydrolysis of the tylosin urea adduct

When the use of tylosin as a feed additive was forbidden by Council Regulation 2821/98, the necessity of a chemical confirmation method for the monitoring of the ban was created. Recently a method was developed for the detection of tylosin in animal feed by means of LC-MS/MS. During the validation high deviating values for the decision limit, detection capability, and repeatability for tylosin in cattle feed were observed, and the presence of urea and the formation of a tylosin urea adduct (TUA) were suggested as possible explanations. In this study two hydrolysis approaches for the TUA adduct were compared, namely, a chemical hydrolysis and an enzymatic hydrolysis with urease. The latter yielded a more complete hydrolysis of urea and was used for further validation. The recovery increased by approximately 15-25% depending on the amount of urea present in the feed (0.5-2%). The decision limit and detection capability were hardly influenced by the enzymatic hydrolysis.     

Detecting interaction(s) and assessing the impact of component subsets in a chemical mixture using fixed-ratio mixture ray designs

An important environmental and regulatory issue is the protection of human health from potential adverse effects of cumulative exposure to multiple chemicals. Earlier literature suggested restricting inference to specific fixed-ratio rays of interest. Based on appropriate definitions of additivity, single chemical data are used to predict the relationship among the chemicals under the zero-interaction case. Parametric comparisons between the additivity model and the model fit along the fixed-ratio ray(s) are used to detect departure from additivity. Collection of data along reduced fixed-ratio rays, where subsets of chemicals of interest are removed from the mixture and the remaining compounds are at the same relative ratios as considered in the full ray, allow researchers to make inference about the effect of the removed chemicals. Methods for fitting simultaneous confidence bands about the difference between the best fitting model and the model predicted under additivity are developed to identify regions along the rays where significant interactions occur. This general approach is termed the “single chemicals required” (SCR) method of analysis. A second approach, termed “single chemicals not required” (SCNR) method of analysis, is based on underlying assumptions about the parameterization of the response surface. Under general assumptions, polynomial terms for models fit along fixed-ratio rays are associated with interaction terms. Consideration is given to the case where only data along the mixture rays are available. Tests of hypotheses, which consider interactions due to subsets of chemicals, are also developed.