Microchip-based purification of DNA from biological samples

A microchip solid-phase extraction method for purification of DNA from biological samples, such as blood, is demonstrated. Silica beads were packed into glass microchips and the beads immobilized with sol-gel to provide a stable and reproducible solid phase onto which DNA could be adsorbed. Optimization of the DNA loading conditions established a higher DNA recovery at pH 6.1 than 7.6. This lower pH also allowed for the flow rate to be increased, resulting in a decrease in extraction time from 25 min to less than 15 min. Using this procedure, template genomic DNA from human whole blood was purified on the microchip platform with the only sample preparation being mixing of the blood with load buffer prior to loading on the microchip device. Comparison between the microchip SPE (microchipSPE) procedure and a commercial microcentrifuge method showed comparable amounts of PCR-amplifiable DNA could be isolated from cultures of Salmonella typhimurium. The greatest potential of the microchipSPE device was illustrated by purifying DNA from spores from the vaccine strain of Bacillus anthracis, where eventual integration of SPE, PCR, and separation on a single microdevice could potentially enable complete detection of the infectious agent in less than 30 min.     

The hardness of the Expected Decision Depth problem

Given a function f over n binary variables, and an ordering of the n variables, we consider the Expected Decision Depth problem. Namely, what is the expected number of bits that need to be observed until the value of the function is determined, when bits of the input are observed according to the given order. Our main finding is that this problem is (essentially) #P-complete. Moreover, the hardness holds even when the function f is represented as a decision tree.     

The effect of nicotine and attention allocation on physiological and self-report measures of induced anxiety in PTSD: A double-blind placebo-controlled trial.

Rates of smoking among populations with psychiatric disorders are more than twice as high as among the general population, yet there are few controlled studies of the mechanisms of this relationship. This trial examined the effect of nicotine by way of cigarette smoking on both self-report and autonomic parameters of anxiety among individuals with PTSD who were also heavy smokers. Half of the participants were randomized to an anxiety-eliciting condition, whereas the other half were assigned to a condition of neutral emotional content. Within each of these conditions, participants were randomized into a nicotine condition (high-yield nicotine cigarette) or a placebo condition (denicotinized cigarette). The final layer of randomization involved assigning participants to either an attention-demanding task or a no task condition. We examined the interactive effects of nicotine and attentional demand on parameters of anxious responding. Nicotine exerted an anxiolytic effect relative to placebo on self-report measures; however, nicotine did not interact with attentional demand in producing this effect. In contrast to the findings on the self-report measures of distress, nicotine enhanced autonomic reactivity to trauma cues, thereby suggesting a decoupling of self-reported anxiety and autonomic arousal associated with responding to trauma-relevant cues. The implications for understanding smoking and psychiatric comorbidity are discussed. (PsycINFO Database Record (c) 2010 APA, all rights reserved)     

Discriminative functional analysis of human movements

This paper investigates the use of statistical dimensionality reduction (DR) techniques for discriminative low dimensional embedding to enable affective movement recognition. Human movements are defined by a collection of sequential observations (time-series features) representing body joint angle or joint Cartesian trajectories. In this work, these sequential observations are modelled as temporal functions using B-spline basis function expansion, and dimensionality reduction techniques are adapted to enable application to the functional observations. The DR techniques adapted here are: Fischer discriminant analysis (FDA), supervised principal component analysis (PCA), and Isomap. These functional DR techniques along with functional PCA are applied on affective human movement datasets and their performance is evaluated using leave-one-out cross validation with a one-nearest neighbour classifier in the corresponding low-dimensional subspaces. The results show that functional supervised PCA outperforms the other DR techniques examined in terms of classification accuracy and time resource requirements.     

A Competence Portfolio for Professionals in the Creative Industries

Within the last decade, the role of the Creative Industries has grown to become an important part of the economic system. The increasing acceleration of new developments in media and ICT technologies greatly affected the Creative Industries' dynamic with a direct impact on the people working in this sector. Since only a few studies focus on competences needs, more or less isolated from the trends within the industry, we address the topic of individual competence shifts in the turbulent environment of the Creative Industries. We investigated the trends regarding competence shifts and their implications as well as the competences which are essential for creative professionals. We conducted a broad literature review as well as a qualitative study, which includes interviews and workshops with industry experts on trends within the Creative Industries and corresponding dimensions and demands for competences. We present four requirements that call for shifts in the education of competences. Based on the discussion of requirements, we present a competence portfolio for the Creative Industries along the dimensions of professional, methodological and personal‐social competences. The portfolio clearly indicates which competences should be taken into consideration for the development of curricula and study programmes in the education of creative professionals. A generalization of these findings suggests new challenges for companies relying on creative professionals.     

Synthesis and characterization of new poly(ethylene glycol)bisphosphonate vinylic monomer and non-fluorescent and NIR-fluorescent bisphosphonate micrometer-sized particles

Bisphosphonates (BPs) are non-hydrolysable pyrophosphate analogs with high affinity to hydroxyapatite (HAP, the main inorganic ingredient in bones) and are mainly used for bone diseases treatments.A new stable PEG-BP monomer and particles have been prepared for enhanced long term bone-targeted imaging and therapy applications. The new formed BP particles possess dual functionalities: chelation to the bone mineral, HAP, through the BP groups and covalent attachment of a dye or drug through primary amine groups.The BP particles showed no cytotoxic effect on human osteosarcoma cell lines and minor toxicity on mouse macrophage cells, indicating that these BP particles are good candidates for in vivo testing. The BP monomer and particles exhibited inhibition of HAP formation and dissolution, similar to a commercial Alendronate. Near IR (NIR) fluorescent BP particles were obtained by conjugation of Cy7-NHS ester to the primary amine groups of the BP particles.     

Ways of listening to depressed women in qualitative research: Interview techniques and analyses.

Qualitative research on depression requires methods of interviewing and analysis that allow the researcher to hear how social factors are structured in thought and how such factors affect depressive conflict. This article discusses 6 ways of listening used in the author's qualitative research with depressed women: open listening, focused awareness, and attending to moral language, to inner dialogues, to meta-statements, and to the logic of the narrative. Examples illustrate how listening to processes of thought leads to content analysis that preserves the individuality of subjects, and to theory formation. Silencing the Self theory is summarized as it relates to these ways of listening. (PsycINFO Database Record (c) 2010 APA, all rights reserved)     

Comparison of natural convection flows under VHTR type conditions modeled by both the conservation and incompressible forms of the Navier-Stokes equations

This paper illustrates a comparative study to analyze the physical differences between numerical simulations obtained with both the conservation and incompressible forms of the Navier-Stokes equations for natural convection flows in simple geometries. The purpose of this study is to quantify how the incompressible flow assumption (which is based upon constant density advection, divergence-free flow, and the Boussinesq gravitational body force approximation) differs from the conservation form (which only assumes that the fluid is a continuum) when solving flows driven by gravity acting upon density variations resulting from local temperature gradients. Driving this study is the common use of the incompressible flow assumption in fluid flow simulations for nuclear power applications in natural convection flows subjected to a high heat flux (large temperature differences). A series of simulations were conducted on two-dimensional, differentially heated rectangular geometries and modeled with both hydrodynamic formulations. From these simulations, the selected characterization parameters of maximum Nusselt number, average Nusselt number, and normalized pressure reduction were calculated. Comparisons of these parameters were made with available benchmark solutions for air with the ideal gas assumption at both low and high heat fluxes. Additionally, we generated specific force quantities and velocity and temperature distributions to provide a basis for further analysis. The simulations and analysis were then extended to include helium at the Very High Temperature gas-cooled Reactor (VHTR) normal operating conditions. Our results show that the consequences of incorporating the incompressible flow assumption in high heat flux situations may lead to unrepresentative results. The results question the use of the incompressible flow assumption for simulating fluid flow in an operating nuclear reactor, where large temperature variations are present.     

Job demands and pesticide exposure among immigrant Latino farmworkers.

The goal of this study was to understand the potential threat of job stressors to farmworker health. To accomplish this goal we studied pesticide exposure, an issue with immediate and long-term health consequences, and predictions from the Demands-Control model of occupational stress. Longitudinal, self-report data and urine samples were collected at monthly intervals from a cohort of Latino farmworkers (N = 287) during the 2007 agricultural season. The primary hypothesis was that greater exposure to psychological demands, physical exertion, and hazardous work conditions are associated with greater odds of detecting dialkylphosphate (DAP) urinary pesticide metabolites, biomarkers indicating exposure to pesticides. Contrary to this hypothesis, results indicated that none of the elements of the Demands-Control model were independently associated with detection of DAP urinary pesticide metabolites. However, analyses produced several interaction effects, including evidence that high levels of control may buffer the effects of physical job demands on detection of DAP urinary pesticide metabolites. (PsycINFO Database Record (c) 2010 APA, all rights reserved)     

A note on fracture criteria for interface fracture

Several criteria for interface fracture are examined and compared to test results obtained from glass/epoxy specimens. These include two energy release rate criteria, a critical hoop stress criterion and a critical shear stress criterion. In addition, approximate plastic zone size and shape within the epoxy are determined for these tests.