Development of antiviral fusion inhibitors: short modified peptides derived from the transmembrane glycoprotein of feline immunodeficiency virus

Feline immunodeficiency virus (FIV) is a naturally occurring pathogen that causes an AIDS-like syndrome in domestic cats and is a valuable model system by which criteria for antiviral vaccines and drugs development can be tested. The cell-entry step of the lentivirus life cycle is regarded as a promising target for the development of new generation inhibitors. We have previously described potent in vitro anti-FIV activity associated with a synthetic octapeptide, termed C8 (Ac-Trp-Glu-Asp-Trp-Val-Gly-Trp-Ile-NH2), containing the Trp-rich motif of FIV transmembrane glycoprotein, which shares a common structural framework with the corresponding molecule of HIV and appears to play a similar role in cell entry. In this report, in an attempt to develop simpler potential fusion inhibitors to be tested in vivo, we describe further studies focused on synthetic peptide analogues of C8. Since C8 inhibitory activity is dependent upon the Trp motif, we systematically replaced these residues with bulky and/or aromatic natural and unnatural amino acids, in order to develop a rational structure-activity relationship. Furthermore, the amino acids located between the Trp residues, which are not crucial for inhibitory activity, were replaced by simple alkyl spacers of appropriate length. Design, NMR structural analysis, in vitro anti-FIV activity in lymphoid cell cultures, and serum stability of these new analogues are reported. The final results indicate that a simpler hexapeptide (Ac-Nal2-Ape-Nal2-Ape-Nal2-Ile-NH2; Nal2 = 3-naphthalen-2-yl-L-alanine, Ape = 5-aminopentanoic acid), almost entirely made up of unnatural amino acid residues, has markedly increased enzymatic stability, while maintaining strong antiviral potency in vitro.     

Neuroprotective Effects of Citicoline in in Vitro Models of Retinal Neurodegeneration

In recent years, citicoline has been the object of remarkable interest as a possible neuroprotectant. The aim of this study was to investigate if citicoline affected cell survival in primary retinal cultures and if it exerted neuroprotective activity in conditions modeling retinal neurodegeneration. Primary retinal cultures, obtained from rat embryos, were first treated with increasing concentrations of citicoline (up to 1000 μM) and analyzed in terms of apoptosis and caspase activation and characterized by immunocytochemistry to identify neuronal and glial cells. Subsequently, excitotoxic concentration of glutamate or High Glucose-containing cell culture medium (HG) was administered as well-known conditions modeling neurodegeneration. Glutamate or HG treatments were performed in the presence or not of citicoline. Neuronal degeneration was evaluated in terms of apoptosis and loss of synapses. The results showed that citicoline did not cause any damage to the retinal neuroglial population up to 1000 μM. At the concentration of 100 μM, it was able to counteract neuronal cell damage both in glutamate- and HG-treated retinal cultures by decreasing proapoptotic effects and contrasting synapse loss. These data confirm that citicoline can efficiently exert a neuroprotective activity. In addition, the results suggest that primary retinal cultures, under conditions inducing neurodegeneration, may represent a useful system to investigate citicoline neuroprotective mechanisms.     

Responsiveness to Hedgehog Pathway Inhibitors in T-Cell Acute Lymphoblastic Leukemia Cells Is Highly Dependent on 5′AMP-Activated Kinase Inactivation

Numerous studies have shown that hedgehog inhibitors (iHHs) only partially block the growth of tumor cells, especially in vivo. Leukemia often expands in a nutrient-depleted environment (bone marrow and thymus). In order to identify putative signaling pathways implicated in the adaptive response to metabolically adverse conditions, we executed quantitative phospho-proteomics in T-cell acute lymphoblastic leukemia (T-ALL) cells subjected to nutrient-depleted conditions (serum starvation). We found important modulations of peptides phosphorylated by critical signaling pathways including casein kinase, mammalian target of rapamycin, and 5′AMP-activated kinase (AMPK). Surprisingly, in T-ALL cells, AMPK signaling was the most consistently downregulated pathway under serum-depleted conditions, and this coincided with increased GLI1 expression and sensitivity to iHHs, especially the GLI1/2 inhibitor GANT-61. Increased sensitivity to GANT-61 was also found following genetic inactivation of the catalytic subunit of AMPK (AMPKα1) or pharmacological inhibition of AMPK by Compound C. Additionally, patient-derived xenografts showing high GLI1 expression lacked activated AMPK, suggesting an important role for this signaling pathway in regulating GLI1 protein levels. Further, joint targeting of HH and AMPK signaling pathways in T-ALL cells by GANT-61 and Compound C significantly increased the therapeutic response. Our results suggest that metabolic adaptation that occurs under nutrient starvation in T-ALL cells increases responsiveness to HH pathway inhibitors through an AMPK-dependent mechanism and that joint therapeutic targeting of AMPK signaling and HH signaling could represent a valid therapeutic strategy in rapidly expanding tumors where nutrient availability becomes limiting.     

Effects of Conformal Nanoscale Coatings on Thermal Performance of Vertically Aligned Carbon Nanotubes

The high aspect ratio and the porous nature of spatially oriented forest‐like carbon nanotube (CNT) structures represent a unique opportunity to engineer a novel class of nanoscale assemblies. By combining CNTs and conformal coatings, a 3D lightweight scaffold with tailored behavior can be achieved. The effect of nanoscale coatings, aluminum oxide (Al₂O₃) and nonstoichiometric amorphous silicon carbide (a‐SiC), on the thermal transport efficiency of high aspect ratio vertically aligned CNTs, is reported herein. The thermal performance of the CNT‐based nanostructure strongly depends on the achieved porosity, the coating material and its infiltration within the nanotube network. An unprecedented enhancement in terms of effective thermal conductivity in a‐SiC coated CNTs has been obtained: 181% compared to the as‐grown CNTs and Al₂O₃ coated CNTs. Furthermore, the integration of coated high aspect ratio CNTs in an epoxy molding compound demonstrates that, next to the required thermal conductivity, the mechanical compliance for thermal interface applications can also be achieved through coating infiltration into foam‐like CNT forests.     

Differential distribution of striatal [123I]beta-CIT in Parkinson's disease and progressive supranuclear palsy, evaluated with single-photon emission tomography

Functional imaging of the presynaptic dopaminergic activity using single-photon emission tomography (SPET) and iodine-123 labelled 2-beta-carboxymethoxy-3-beta-(4-iodophenyl)tropane ([123I]beta-CIT) is important for the assessment of disease severity and progression in patients with Parkinson's disease (PD). However, its capability to discriminate between different extrapyramidal disorders has not yet been assessed. The aim of this study was to evaluate the possibility of differentiating patients with PD and with progressive supranuclear palsy (PSP) by means of this method. The distribution of [123I]beta-CIT in the basal ganglia was assessed in six normal subjects, 13 petients with PD and five patients with PSP in whom the disease was mild. SPET images were obtained 24+/-2 h after i.v. injection of the tracer using a brain-dedicated system (CERASPECT). MR and SPET images were co-registered in four normal subjects and used to define a standard set of 16 circular regions of interest (ROIs) on the slice showing the highest striatal activity. The basal ganglia ROIs corresponded to (1) the head of caudate, (2) a region of transition between the head of caudate and the anterior putamen, (3) the anterior putamen and (4) the posterior putamen. A ratio of specific to non-displaceable striatal uptake was calculated normalising the activity of the basal ganglia ROIs to that of the occipital cortex (V3"). ANOVA revealed a global reduction of V3" in all ROIs of PD and PSP patients compared with normal controls (P<0. 0001). A Mann-Whitney U test showed that the difference between PD and PSP patients was statistically significant for the caudate region only (Z value: 2.6; P<0.01). By subtracting V3" caudate values from those of the putamen, differentiation from PSP was possible in 10/13 PD patients. In conclusion, analysis of [123I]beta-CIT distribution in discrete striatal areas provides information on the relative caudate-putamen damage, with different values being obtained in patients clinically diagnosed as having either PD or PSP.     

A Formal Verification Environment for Railway Signaling System Design

A fundamental problem in the design and development of embedded control systems is the verification of safety requirements. Formal methods, offering a mathematical way to specify and analyze the behavior of a system, together with the related support tools can successfully be applied in the formal proof that a system is safe. However, the complexity of real systems is such that automated tools often fail to formally validate such systems.This paper outlines an experience on formal specification and verification carried out in a pilot project aiming at the validation of a railway computer based interlocking system. Both the specification and the verification phases were carried out in the JACK (Just Another Concurrency Kit) integrated environment. The formal specification of the system was done by means of process algebra terms. The formal verification of the safety requirements was done first by giving a logical specification of such safety requirements, and then by means of model checking algorithms. Abstraction techniques were defined to make the problem of safety requirements validation tractable by the JACK environment.     

MicroMAIS: executing and orchestrating Web services on constrained mobile devices

Mobile devices with their more and more powerful resources allow the development of mobile information systems in which services are not only provided by traditional systems but also autonomously executed and controlled in the mobile devices themselves. Services distributed on autonomous mobile devices allow both the development of cooperative applications without a back‐end infrastructure and the development of applications blending distributed and centralized services. In this paper, we propose MicroMAIS: an integrated platform for supporting the execution of Web service‐based applications natively on a mobile device. The MicroMAIS platform is composed of mAS and μ‐BPEL. The former allows the execution of a single Web service, whereas the latter permits the orchestration of several Web services according to the WS‐BPEL standard. Copyright © 2011 John Wiley & Sons, Ltd.     

Penalized factor mixture analysis for variable selection in clustered data

A model-based clustering approach which contextually performs dimension reduction and variable selection is presented. Dimension reduction is achieved by assuming that the data have been generated by a linear factor model with latent variables modeled as Gaussian mixtures. Variable selection is performed by shrinking the factor loadings though a penalized likelihood method with an L1 penalty. A maximum likelihood estimation procedure via the EM algorithm is developed and a modified BIC criterion to select the penalization parameter is illustrated. The effectiveness of the proposed model is explored in a Monte Carlo simulation study and in a real example.     

LaCoO3 nanosystems by a hybrid CVD/sol-gel approach

LaCoO3 nanosystems are receiving increasing attention for the development of innovative fuel cells and heterogeneous catalysts. In this report, we describe the synthesis of nanophasic LaCoO3 thin films by a hybrid chemical vapor deposition (CVD)/sol-gel (SG) approach. The adopted strategy consists in the CVD of La-O-based systems on SG cobalt oxide xerogels CoOx(OH)y at temperatures as low as 200 degrees C and in the subsequent thermal treatment in air (400-800 degrees C, 2-8 h). In this context, particular attention is devoted to achieving an intimate La/Co intermixing already in the as-prepared systems, in order to favor reactions yielding a single La-Co-O phase with uniform composition. The obtained results point out to the formation of pure and structurally homogeneous LaCoO3 nanosystems after annealing at 700 degrees C, 2 h, with a typical grain-like morphology. More severe thermal treatment resulted in the thermal decomposition of LaCoO3 nanocrystallites.     

LC/ESI–MS/MS method for the identification and quantification of spinosad residues in olive oils

This paper reports the use of liquid chromatography/electrospray ionisation tandem mass spectrometry (LC/ESI-MS/MS) method for the identification and quantification of residues of the natural insect control agent Spinosad in olive oils. The method determines the active ingredients Spinosyns A and D and two minor metabolites Spinosyns B and K without laborious sample treatment. All four analytes are determined simultaneously in a single injection using positive electrospray ionisation LC–MS with multiple reaction monitoring (MRM). For the quantitative analysis of samples an external calibration curve was built. The calibration curves for each analyte were linear in the concentration range 20–500 ng/mL with a correlation coefficient ranging between 0.995 and 0.999. Results from spike and recovery experiments at levels of 100 and 200 ng/mL gave mean recoveries ranging from 87–116% with satisfactory precision (relative standard deviation (RSD) from 1–8%). The excellent selectivity and sensitivity allows quantification and identification of low levels of Spinosad in olive oils (limits of quantification (LOQs) 0.004–0.073).