施N对不同水稻品种N肥利用率及根际硝化作用和硝化微生物的影响

发生在水稻根际的硝化作用对水稻的氮素（N）营养受到人们越来越大的关注。在田间条件下研究了不同N效率粳稻品种（4007、武运粳7号和Elio）在无肥（0kgN/hm^2）、中肥（180kgN/hm^2）和高肥（300kgN/hm^2）水平下籽粒产量、吸N量、N肥利用率、根际土壤铵态氮（NH4^＋-N）和硝态氮（NO3^--N）含量、硝化强度和氨氧化细菌（AOB）数量。结果表明不同水稻品种的籽粒产量在3个N处理中差异极显著,4007在中肥处理中获得最高产量11117kg/hm^2,而Eilo在所有处理中籽粒产量均最低。各品种地上部吸N量随施N量增加而增加,但各品种之间差异不显著。不同水稻品种N肥利用率差异显著,4007显著高于武运粳7号和Elio。本试验根据不同品种水稻在不施N肥水平下的籽粒产量与N肥利用率的大小,将3个品种分为N肥高效敏感型（4007）、N肥高效不敏感型（武运粳7号）和N肥低效不敏感型（Elio）。在水稻中后期干湿交替的水分管理条件下,无肥和中肥区的水稻根际土壤以NO3^--N为主;而在高肥区则以NH4^＋-N为主。随着施N量增加,水稻根际土壤铵、硝态N含量也随之增加。NH4^＋-N含量在无肥、中肥和高肥水平下分别为0.88、0.94mg/kg和13.5mg/kg,而NO3^--N含量分别为1.61、1.73mg/kg和2.33mg/kg。不同水稻品种根际土壤硝化强度之间差异极显著,在3个施N水平下均表现为4007〉武运粳7号〉Elio。其平均值分别为6.94、5.46μg/（kg·h）和2.42μg/（kg·h）。在3个施N水平下,Elio根际土壤AOB数量均显著低于4007和武运粳7号。4007根际土壤AOB数量在高肥水平下达最大值2.02×106个/g土,而最小值为中肥水平下Elio的根际土壤（1.89×105个/g土）。相关性分析表明,水稻根际土壤硝化强度在无肥、中肥和高肥条件下与产量呈极显著正相关关系（r=0.799,0.877,0.934）,而且在中肥条件下与水稻N肥利用率显著相关（r=0.735）。水稻根际土壤AOB数量分别和硝化强度以及水稻籽粒产量呈极显著正相关关系。试验结果表明,水稻根际的硝化作用较大程度上决定着水稻籽粒产量或水稻N肥利用率。     

红壤区不同产量籼稻品种苗期根表和根际土壤硝化特征

以不同产量籼稻品种中旱22(ZH,高产品种)和禾盛10号(HS,低产品种)为材料,采用根际培养箱(三室)--速冻切片技术研究了红壤水稻土种植条件下,水稻苗期生长、氮素积累和氮素利用率(NUE)、根孔隙度(POR)、根际土壤矿质态氮含量和硝化强度.结果表明,ZH苗期生长、氮素吸收及NUE均显著优于HS,且ZH单株不定根数量及根系通气组织发育程度(用POR表示)均显著高于HS.ZH根际和土体土壤中铵(NH+4)含量始终低于HS,而硝(NO-3)含量则始终高于HS,但二者根表土壤NH+4和NO-3含量均无显著差异.ZH和HS硝化强度最大发生部位均是在距根表2 mm的根际土壤,分别为:0.48 μmol kg-1h-1和0.31 μmol kg-1h-1.随着距根表越远,硝化强度就越弱,直至距根表10～20 mm处土壤硝化强度就接近于土体土壤.ZH根际土壤硝化强度始终显著高于HS,但二者根表和土体土壤硝化强度均无显著差异.与不种水稻的CK相比,根际土壤硝化强度提高了约2～3.5倍.尽管红壤水稻土硝化作用很弱,但红壤区水稻根际硝化作用与水稻苗期生长和氮素营养密切相关.     

淹水条件下籼稻与粳稻苗期根际土壤硝化作用的时空变异

由于硝态氮（NO3^--N）对于水稻的生长起到非常重要的作用,所以发生在水稻根际的硝化作用越来越受到人们的重视.试验采用根盒（3室）--速冻切片技术研究了常规籼稻（扬稻6号）和常规粳稻（农垦57）苗期根际土壤矿质态氮、硝化作用和氨氧化细菌数量的时空变异.结果表明,在淹水条件下,土壤矿质态氮主要为铵态氮（NH4^＋-N）,NH4^＋含量随水稻生育期的推进变化不大,但随着距根区的距离增加其含量随之增加,两个水稻品种之间差异不显著;而NO3-的变化趋势与NH4^＋不一致,NO3^-含量随水稻生育期的延长而显著下降,在培养58d时其平均含量约为0.05 mg kg^-1,同时在整个土体内呈均匀分布,两个水稻品种之间差异显著.土壤的硝化强度随水稻的生长而增强,且两种水稻的硝化强度均为根际土壤最高,然后依次为土体土壤和根区土壤.扬稻6号和农垦57硝化强度最大值分别出现在距根6 mm和2 mm处,最大值分别为0.88 mg kg^-1h^-1和0.73 mg kg^-1h^-1.土壤氨氧化细菌（AOB）数量随水稻生长时间的增加而增加,且其水平变异趋势与土壤的硝化强度一致,根际土壤AOB数量最多,土体土壤次之,根区土壤最少.相关分析结果表明,硝化强度和AOB数量呈显著正相关关系（r=0.86,p＜0.01）.种植扬稻6号的土壤NO3^-浓度、硝化强度以及AOB数量总是高于农垦57.     

施氮量对夏玉米根际和非根际土壤酶活性及氮含量的影响

在华北平原潮土上进行田间试验,研究施氮量对夏玉米根际和非根际土壤酶活性及氮含量的影响.结果表明: 不同施氮水平下土壤酶活性均表现出一致的季节性变化趋势.与不施氮处理相比,施氮处理能显著提高根际和非根际土壤硝态氮含量及根际土壤铵态氮含量,显著增强土壤几丁质酶、β-葡萄糖苷酶、纤维素酶和木聚糖酶活性.在整个玉米生育期内,非根际土壤硝态氮含量显著高于根际土壤;非根际土壤铵态氮含量在灌浆期显著高于根际土壤,但在苗期和完熟期则显著低于根际土壤;根际土壤几丁质酶、β-葡萄糖苷酶、纤维素酶和木聚糖酶活性都显著高于非根际土壤.施氮对土壤有机质含量没有显著影响;在0～180 kg·hm^-2施氮范围内,施氮可明显增加土壤全氮含量,但当施氮量超过180 kg·hm^-2时,土壤全氮含量则明显下降.综上,适量施氮能显著增强土壤酶活性,提高土壤全氮含量,改善土壤生化性质.     

脲酶抑制剂/硝化抑制剂对植稻土壤中尿素N行为的影响

采用自制根盒试验,主要研究了脲酶抑制剂氢醌（HQ）,硝化抑制剂双氰胺（DCD）及二者组合对离水稻根际不同距离处NH4^--N和NO3^-N分布的影响,结果表明,DCD及其与HQ组合均能显著促进稻株地上部分生长,始终显著降低水稻根际与近根际土中NH4^ -N含量直至施肥后60d,施肥后20d时,DCD及其与HQ组合可使非根际土中NH4^ -N含量显著增加,随后,却出现相反现象,施肥后20d时,距根际不同距离的土壤中,配施DCD或DCD＋HQ处理均能显著降低NO3^-N含量,随后,近根际和非根际仍保持上述现象直至施肥后40d;同未施DCD处理相比,根际土壤却较早出现NO3^--N含量高峰,正好与水稻N营养需求时期相一致,因此,DCD及其与HQ组合可减少水稻根际环境下尿素N损失潜势,通过不种稻土壤和距根际3cm处的土壤中尿素无机氮形态分布的差异,充分显示了研究水稻根际土壤氮素转化及相关抑制剂对其影响时,以取离根际3cm外的土壤作为非根际明显优于不种稻土壤。     

水稻分蘖期和孕穗期根际反硝化菌群落结构及功能变化

通过水稻盆栽试验,分别于水稻分蘖期和孕穗期采集根际与非根际土壤,利用末端限制性片段长度多态技术(T-RFLP)和实时荧光定量PCR(qPCR)技术探究水稻生长对根际反硝化作用和反硝化微生物的影响.结果表明: 分蘖期根际土壤的反硝化势显著低于非根际土壤,而孕穗期根际与非根际土壤的反硝化势没有显著性差异.但分蘖期和孕穗期根际土壤中含narG和nosZ基因的微生物数量均显著高于非根际土壤,其中含nosZ基因的反硝化微生物的群落组成结构和多样性对根际环境响应更敏感.说明虽然水稻根系生长会刺激反硝化微生物的生长繁殖,但抑制了根际土壤中一些反硝化微生物的活性,从而降低了根际土壤的反硝化潜势.     

沼液与化肥配施对冬小麦根际土壤微生物数量和酶活性的影响

研究了等氮量条件下沼液与化肥配施对冬小麦根际土壤微生物(细菌、真菌和放线菌)数量及土壤酶(脲酶、蛋白酶和过氧化氢酶)活性的影响.结果表明:随着生育期的推进,不同施肥处理小麦根际土壤微生物数量和土壤脲酶、过氧化氢酶活性均呈先降后升的变化趋势,而蛋白酶活性则呈"S"形曲线变化.沼液与化肥合理配施能显著增加根际土壤微生物数量,提高土壤脲酶和蛋白酶活性,以基施50%沼液氮基础上追施50%化学氮处理和基施25%沼液氮基础上追施75%化学氮处理较好,传统尿素处理和单一沼液处理效果均较差.土壤过氧化氢酶活性以基施25%沼液氮基础上追施75%化学氮处理及单施沼液处理在所有测定时期均表现最高,其他处理在各生育时期间差异很大.沼液与尿素配合施用可以提高小麦根际土壤微生物数量和酶活性.     

丘陵红壤茶园根际氮磷转化对不同强度酸雨胁迫的响应

南方丘陵红壤茶园长期受到酸沉降的胁迫,但茶树根际氮(N)、磷(P)转化过程对酸雨的响应及其机制尚不清楚.以江西典型丘陵红壤25年茶园为对象,开展pH 4.5、pH 3.5、pH 2.5及对照4种不同强度酸雨处理的原位模拟试验,于试验第3年测定根际和非根际土壤矿质N、速效P和相关酶的活性,并估测土壤N、P矿化速率,计算各变量的根际效应.结果表明: 与对照相比,pH 4.5、pH 3.5和pH 2.5处理根际土壤NO₃^--N含量分别降低了7.1%、42.1%和49.9%,矿质N分别降低了6.4%、35.9%和40.3%,速效P分别降低了10.5%、41.1%和46.9%;根际氨化速率分别降低了18.7%、30.1%和44.7%,N净矿化速率分别降低了3.6%、12.7%和38.8%,P矿化速率分别降低了31.5%、41.8%和63.0%,但不同处理之间根际硝化速率差异不显著;根际土壤脲酶和酸性磷酸酶活性均表现为随酸雨加重呈增强的趋势(P<0.05).非根际土壤除NH₄⁺-N外,其他有效N和P含量未随酸雨加重而改变;不同酸雨处理对非根际土壤氨化、硝化、N净矿化速率和P矿化速率的影响差异均不显著.根际NH₄⁺-N、NO₃^--N、矿质N、氨化和净矿化速率均随着酸雨强度加重由正效应转变为负效应,而脲酶和酸性磷酸酶活性由负效应转变为正效应,但速效P和P矿化速率始终表现为负效应,硝化速率始终为正效应.综上所述,连续酸雨加重总体上抑制了根际N、P转化,降低其有效性,且不同程度改变其根际效应,从而影响茶园养分循环.     

水稻根系通气组织与根系泌氧及根际硝化作用的关系

通过根箱土培试验研究了不同产量籼稻品种中旱22(ZH,高产品种)及禾盛10号(HS,低产品种)苗期根系生长、通气组织发育、根系径向泌氧量(radial oxygen loss,ROL)以及根表和根际土壤硝化强度差异。结果表明,除水稻播种40 d时二者根数量和根干重无显著差异外,ZH根直径、根数量和根干重均显著高于HS,二者差异尤其表现在根系生物量差异。两个水稻品种在距根尖20 mm处均可见辐射状通气组织,ZH皮层薄壁细胞已经完全崩溃形成连接中柱和外皮层的纵向气腔,而HS皮层薄壁细胞未发生完全离解,但仍能观察到明显的连接中柱和外皮层的纵向气腔的形成。同时ZH外皮层厚壁细胞体积较小,排列紧密,细胞壁增厚程度大;而HS外皮层厚壁细胞体积相对较大,排列疏松,细胞壁增厚程度相对较小。表明高产品种通气组织发育比低产品种更加完善,表现为ZH根孔隙度(porosity of root,POR)显著高于HS,且高产品种对水稻根系ROL的屏蔽作用较低产品种更强,为根系提供更充足的氧气供应,促进根系生长。除了水稻播种后40 d时ZH和HS单根ROL无显著差异外(P<0.05),ZH单株、单位重量以及单根ROL均显著高于HS(P<0.01)。两个水稻品种硝化强度均表现为根际土壤显著高于根表土壤 (P<0.01),前者大约是后者的3-6倍。两个品种根表土壤硝化强度无显著差异,而ZH根际土壤硝化强度均显著高于HS。相关性分析结果表明水稻根际土壤硝化强度和整株水稻ROL呈极显著正相关关系(r=0.803,P<0.01),和水稻POR也呈现极显著正相关关系(r=0.808,P<0.01),同时和根系直径、数量和干重均呈极显著正相关关系(P<0.01)。而根表土壤硝化强度和以上指标均无相关关系。由于硝化作用是好氧过程,因此高产品种由于根系发达,通气组织发育好,相应ROL也较大,造成根际土壤氧气含量高,从而可能导致根际土壤硝化强度显著高于低产品种。     

西宁南山4种灌木根际和非根际土壤微生物、酶活性和养分特征

西宁南山区植被退化情况严重,人工造林植被恢复被看作是最有效的恢复手段,其中选择合适造林树种尤为关键。选择人工种植的唐古特白刺Nitraria tangutorum、柠条Caragana korshinskii、西北小蘗Berberis vernae和短叶锦鸡儿Caragana brevifolia共4种灌木树种造林试验区为研究对象,通过测定根际和非根际土壤微生物数量、酶活性及养分含量,综合比较种植4种灌木树种根际和非根际土壤肥力差异,科学评价其对土壤的改善效果。研究表明:(1)土壤微生物数量和酶活性总体呈现出根际高于非根际的规律,仅放线菌数量和脲酶活性出现了根际低于非根际现象。(2)土壤养分方面,4种灌木根际土壤和非根际土壤p H值、全N、全P、全K含量差异不显著,有机质、有效P、速效K含量均呈现出根际非根际,而碱解N则是根际非根际。(3)土壤酶活性与土壤微生物数量相关性不显著,土壤有机质含量与土壤细菌、真菌数量呈极显著正相关,有效P含量与土壤细菌、真菌和放线菌数量呈极显著正相关,速效K含量与过氧化氢酶、酸性磷酸酶活性呈显著正相关,全N、碱解N含量均与脲酶活性呈显著正相关。(4)从土壤肥力综合水平来看,根际非根际,其中根际土壤中西北小蘗柠条短叶锦鸡儿唐古特白刺,研究结果表明西北小蘗和柠条能大幅提高土壤肥力,改良土壤效果较好。     

不同氮效率水稻全生育期内对增硝营养的响应及其生理机制

通过添加硝化抑制剂（二氰胺,DCD）来控制硝化作用的水培试验方法,研究了氮高效水稻品种南光和氮低效水稻品种ELIO的籽粒产量对增硝营养（NH4＋∶NO3-比例为100∶0和75∶25）的响应,同时从产量构成、不同生育时期水稻生长、氮素吸收和同化4个方面研究了造成其产量差异的生理机制。结果表明：增NO3-营养可以显著促进氮高效水稻品种南光的生长,从而使其籽粒产量水平提高21%,而对氮低效水稻品种ELIO的籽粒产量没有显著影响。进一步分析表明：在增NO3-营养条件下,南光的穗粒数增加了25%,结实率增加了16%,而氮低效水稻品种ELIO的结实率和穗粒数在两种营养条件下没有显著变化;增NO3-营养可以促进南光对氮素的吸收,使其在苗期、分蘖盛期、齐穗期和成熟期对氮素的吸收量平均增加了36%,进而促进了其生长,干物质积累量在四个生育时期平均增加了30%;南光叶片硝酸还原酶和根系谷氨酰胺合成酶的活力在增硝营养条件下分别增加了100%和95%,说明增硝营养促进了南光对NH4＋和NO3-的同化利用。与氮低效水稻品种（ELIO）相比,氮高效水稻品种（南光）对增硝营养表现出较强的生理响应。     

The relationship between rhizosphere nitrification and nitrogen-use efficiency in rice plants

Two different rice cultivars, Yangdao 6 [Indica rice cultivar with high nitrogen-use efficiency (NUE)] and Nongken 57 (Japonica rice cultivar with low NUE) were used to study the relationship between NUE and nitrification activity in the rice seedling rhizosphere soil using a rhizobox with three compartments, and a soil-slicing method. The roots of both rice cultivars developed aerenchyma tissue [expressed as percentage porosity of root (POR)], but Yangdao 6 showed better development than Nongken 57. This root morphology change results in more radial oxygen loss (ROL) into the rhizosphere. Leaf glutamine synthetase activity (GSA) and nitrate (NO3-) reductase activity (NRA) of Yangdao 6 were significantly higher than those of Nongken 57, while there was no significant difference in root NRA between the cultivars. The nitrification activities were maximal in rhizosphere soil, followed by those in the bulk soil and the root surface for both cultivars. The rhizosphere nitrification activity, NO3- concentration and abundance of ammonia-oxidizing bacteria (AOB) associated with Yangdao 6 were always higher than those of Nongken 57. Therefore, we conclude that the greater N uptake by Yangdao 6 when compared to Nongken 57 can be mainly attributed to the bigger capacity for nitrification in Yangdao 6.     

Rapid and dissimilar response of ammonia oxidizing archaea and bacteria to nitrogen and water amendment in two temperate forest soils

Biochemical processes relevant to soil nitrogen (N) cycling are performed by soil microorganisms affiliated with diverse phylogenetic groups. For example, the oxidation of ammonia, representing the first step of nitrification, can be performed by ammonia oxidizing bacteria (AOB) and, as recently reported, also by ammonia oxidizing archaea (AOA). However, the contribution to ammonia oxidation of the phylogenetically separated AOA versus AOB and their respective responsiveness to environmental factors are still poorly understood. The present study aims at comparing the capacity of AOA and AOB to momentarily respond to N input and increased soil moisture in two contrasting forest soils. Soils from the pristine Rothwald forest and the managed Schottenwald forest were amended with either NH(4)(+)-N or NO(3)(-)-N and were incubated at 40% and 70% water-filled pore space (WFPS) for four days. Nitrification rates were measured and AOA and AOB abundance and community composition were determined via quantitative PCR (qPCR) and terminal restriction length fragment polymorphism (T-RFLP) analysis of bacterial and archaeal amoA genes. Our study reports rapid and distinct changes in AOA and AOB abundances in the two forest soils in response to N input and increased soil moisture but no significant effects on net nitrification rates. Functional microbial communities differed significantly in the two soils and responded specifically to the treatments during the short-term incubation. In the Rothwald soil the abundance and community composition of AOA were affected by the water content, whereas AOB communities responded to N amendment. In the Schottenwald soil, by contrast, AOA responded to N addition. These results suggest that AOA and AOB may be selectively influenced by soil and management factors.     

CARD-FISH研究食细菌线虫对氨氧化细菌(AOB)数量的影响

土壤动物与微生物的取食与反馈之间的关系是土壤生态学研究的核心内容之一。通过接种原位的食细菌线虫和微生物群落模拟土壤真实环境,采用CARD-FISH方法来观察食细菌线虫的不同取食密度下,氨氧化细菌(ammonia oxidizing bacteria)数量的动态变化,以揭示土壤食细菌线虫对AOB数量的影响及AOB的反馈强度。结果表明:与单独接种细菌的处理(SB)相比,接种食细菌线虫显著地增加了土壤中AOB的数量,3个不同线虫接种密度处理中AOB数量表现为接种20条g-1干土的处理(SBN20)接种10条g-1干土的处理(SBN10)接种40条g-1干土的处理(SBN40)。由于过度取食,SBN40处理中AOB的数量在培养了14d后低于SB处理,且在第28天时显著低于SB处理。接种食细菌线虫显著增加了土壤中NH4+-N和NO3-N的含量,表明食细菌线虫促进了N的矿化和硝化作用。矿化作用增强使得硝化作用的底物NH4+-N显著增加可能是AOB数量显著增多的重要原因之一。     

The potential for nitrification and nitrate uptake in the rhizosphere of wetland plants: a modelling study

BACKGROUND AND AIMS: It has recently found that lowland rice grown hydroponically is exceptionally efficient in absorbing NO3-, raising the possibility that rice and other wetland plants growing in flooded soil may absorb significant amounts of NO3- formed by nitrification of NH4+ in the rhizosphere. This is important because (a) this NO3- is otherwise lost through denitrification in the soil bulk; and (b) plant growth and yield are generally improved when plants absorb their nitrogen as a mixture of NO3- and NH4+ compared with growth on either N source on its own. A mathematical model is developed here with which to assess the extent of NO3- absorption from the rhizosphere by wetland plants growing in flooded soil, considering the important plant and soil processes operating. METHODS: The model considers rates of O2 transport away from an individual root and simultaneous O2 consumption in microbial and non-microbial processes; transport of NH4+ towards the root and its consumption in nitrification and uptake at the root surface; and transport of NO3- formed from NH4+ towards the root and its consumption in denitrification and uptake by the root. The sensitivity of the model's predictions to its input parameters is tested over the range of conditions in which wetland plants grow. KEY RESULTS: The model calculations show that substantial quantities of NO3- can be produced in the rhizosphere of wetland plants through nitrification and taken up by the roots under field conditions. The rates of NO3- uptake can be comparable with those of NH4+. The model also shows that rates of denitrification and subsequent loss of N from the soil remain small even where NO3- production and uptake are considerable. CONCLUSIONS: Nitrate uptake by wetland plants may be far more important than thought hitherto. This has implications for managing wetland soils and water, as discussed in this paper.     

氮肥形态对冬小麦根际土壤氮素生理群活性及无机氮含量的影响

采用大田盆栽方法研究了硝态氮肥、铵态氮肥、酰胺态氮肥3种氮肥形态对冬小麦品种豫麦50生育中后期(拔节期、开花期、花后14 d、花后28 d)根际土壤氮转化相关微生物活性、酶活性和根际土壤NH+4离子、NO-3离子含量的影响。结果表明:随着生育期的推进,除脲酶外,氨化细菌、硝化细菌、亚硝化细菌、反硝化细菌和蛋白酶活性变化的均为"倒V"型变化特征,以花后14 d活性最强;而脲酶活性在拔节期最强,并且其活性远大于其它微生物及酶。氮肥形态对根际土壤氮素生理群及无机氮的影响不同。酰胺态氮肥促进了根际氨化细菌、反硝化细菌、脲酶、蛋白酶的活性,而硝化细菌、亚硝化细菌在硝态氮肥条件下活性较强。除拔节期外,土壤中NH+4离子在铵态氮肥处理下含量较高,NO-3离子在酰氨态氮肥处理下含量较高。因此,酰胺态氮能够促进小麦根际土壤有机氮的分解,硝态氮肥可以促进土壤中氨的转化,以利于小麦根系的吸收与利用。氮肥形态主要是通过影响土壤中氮素生理类群及酶的活性,从而影响土壤中无机氮的含量。     

High abundance of ammonia-oxidizing archaea in acidified subtropical forest soils in southern China after long-term N deposition

Nitrification has been believed to be performed only by autotrophic ammonia-oxidizing bacteria (AOB) and nitrite-oxidizing bacteria (NOB) until the recent discovery of ammonia-oxidizing archaea (AOA). Meanwhile, it has been questioned whether AOB are significantly responsible for NH(3) oxidation in acidic forest soils. Here, we investigated nitrifying communities and their activity in highly acidified soils of three subtropical forests in southern China that had received chronic high atmospheric N deposition. Nitrifying communities were analyzed using PCR- and culture (most probable number)-based approaches. Nitrification activity was analyzed by measuring gross soil nitrification rates using a (15) N isotope dilution technique. AOB were not detected in the three forest soils: neither via PCR of 16S rRNA and ammonia monooxygenase (amoA) genes nor via culture-based approaches. In contrast, an extraordinary abundance of the putative archaeal amoA was detected (3.2?×?10(8) -1.2?×?10(9) g?soil(-1) ). Moreover, this abundance was correlated with gross soil nitrification rates. This indicates that amoA-possessing archaea rather than bacteria were predominantly responsible for nitrification of the soils. Furthermore, sequences of the genus Nitrospira, a dominant group of soil NOB, were detected. Thus, nitrification of acidified subtropical forest soils in southern China could be performed by a combination of AOA and NOB.     

Dynamics of ammonia-oxidizing communities in barley-planted bulk soil and rhizosphere following nitrate and ammonium fertilizer amendment

Oxidation of ammonia by nitrifying microorganisms is a major pathway that fertilizer nitrogen (N) may take upon application to agricultural soils, but the relative roles of bacterial (AOB) vs. archaeal (AOA) ammonia oxidizers are controversial. We explored the effects of various forms of mineral N fertilizer on the AOB and AOA community dynamics in two different soils planted with barley. Ammonia oxidizers were monitored via real-time PCR and terminal restriction fragment length polymorphism analysis of bacterial and archaeal amoA genes following the addition of either [NH?]?SO?, NH?NO? or KNO?. AOB and AOA communities were also studied specifically in the rhizospheres of two different barley varieties upon [NH?]?SO? vs. KNO? addition. AOB changed in community composition and increased in abundance upon ammonium amendment in bulk soil and rhizosphere, with changes in bacterial amoA copy numbers lagging behind relative to changes in soil ammonium. In both soils, only T-RFs corresponding to phylotypes related to Nitrosospira clade 3a underwent significant community changes. Increases in AOB abundance were generally stronger in the bulk soil than in the rhizosphere, implying significant ammonia uptake by plant roots. AOA underwent shifts in the community composition over time and fluctuated in abundance in all treatments irrespective of ammonia availability. AOB were thus considered as the main agents responsible for fertilizer ammonium oxidation, while the functions of AOA in soil N cycling remain unresolved.