湖泊微生物反硝化过程及速率研究进展

湖泊中微生物介导的反硝化过程对于区域乃至全球的气候环境变化有着深远的影响。因此,研究湖泊微生物反硝化过程及速率有助于我们深刻理解湖泊氮元素生物地球化学循环规律,全面认识湖泊生境对全球氮循环的贡献。本文综述了湖泊生境中反硝化过程(包括典型的反硝化过程及与其他物质循环耦合的反硝化过程,如与有机氮耦合的共反硝化作用、与碳循环耦合的硝酸盐/亚硝酸盐依赖型厌氧甲烷氧化、与铁循环耦合的硝酸盐依赖型铁氧化、与硫循环耦合的硝酸盐还原硫氧化)的速率、驱动微生物及其影响因素。最后对湖泊反硝化过程研究现状和未来发展方向提出总结与展望。     

真菌反硝化过程及其驱动的N2O产生机制研究进展

真菌反硝化过程的发现打破了反硝化过程只发生在原核生物中的传统认识,是对全球微生物氮循环过程的重要补充。真菌参与的反硝化过程由于缺乏N_2O还原酶,其终产物为具有强辐射效应的温室气体N_2O。真菌在环境中分布广泛,生物量巨大,故真菌反硝化作用对全球N_2O释放通量的贡献是不容忽视的。近年来许多研究表明,真菌反硝化过程是自然环境中N_2O产生的重要途径。本文对反硝化真菌的发现、多样性及分布、产生N_2O的机制和活性测定方法等几个方面进行综述,并对未来的研究提出展望。     

好氧反硝化菌脱氮特性研究进展

好氧反硝化菌的发现,是对传统反硝化理论的丰富与突破. 由于其在脱氮方面的独特优势,已成为目前废水生物脱氮领域研究的热点. 好氧反硝化菌能够在有氧条件下,利用有机碳源生长的同时将含氮化合物反硝化生成N2等气态氮化物,多数还能同时进行异养硝化作用,将铵态氮直接转化为含氮气体. 本文从电子理论、反硝化酶系等方面对目前已分离出的一些好氧反硝化菌的脱氮特性及其脱氮机理进行探讨,分析了溶解氧、碳源类型及C/N等环境条件对其脱氮作用的影响,介绍了好氧反硝化菌的筛选方法及应用现状,对其应用前景和发展方向进行了展望.     

好氧反硝化生物脱氮技术的研究进展

好氧反硝化生物脱氮技术自提出以来,凭借能实现同步硝化反硝化、节省基建投资及运行费用等诸多优点,受到国内外环境领域学者的广泛关注。本文首先总结了近年来好氧反硝化菌种的筛选分离情况,以及环境因子对好氧反硝化菌脱氮效能的影响,包括溶解氧(dissolved oxygen,DO)、碳氮比(C/N)、温度等。然后深入探讨了好氧反硝化生物脱氮技术的原理,好氧反硝化过程中的关键功能基因及酶,同时介绍了分子生物技术在好氧反硝化研究过程中的应用,以及好氧反硝化生物脱氮技术在实际应用方面的研究现状。最后,基于目前的研究瓶颈问题,对未来好氧反硝化生物脱氮技术的研究方向提出了科学展望。     

有机物消耗对珠江口沉积物反硝化和厌氧氨氧化过程的影响

反硝化及厌氧氨氧化是两个主要的氮汇途径, 能有效地将生态系统中的固定氮转化为N₂ 或N₂O 释放到大气中。利用微宇宙与中宇宙模拟实验, 本研究系统地分析了有机物的种类、可利用性和浓度大小对珠江口沉积物反硝化和厌氧氨氧化过程的影响。研究结果表明: 有机物的消耗能显著提高反硝化的活性, 不同种类的有机物表现出不同的活性, 简单的小分子有机物活性最高, 复杂有机物次之, 惰性有机物则难以被利用。然而, 有机物对厌氧氨氧化过程的促进并不显著, 这主要与其自养型的代谢方式有关。中宇宙实验室进一步表明, 有机物的消耗不但给反硝化过程提供了能源, 而且由于有机物分解消耗氧气,为反硝化过程的发生提供了必要的环境条件。在有机物负荷状态下, 反硝化过程在珠江口沉积物的脱氮过程中发挥主导作用。总之, 沉积物中微生物脱氮是依赖有机物消耗的过程, 表现出强烈的碳氮代谢耦合。     

土壤氮素转化的关键微生物过程及机制

微生物是驱动土壤元素生物地球化学循环的引擎.氮循环是土壤生态系统元素循环的核心之一,其四个主要过程,即生物固氮作用、氨化作用、硝化作用、反硝化作用,均由微生物所驱动.近10年来,随着免培养的分子生态学技术和高通量测序技术等的发展,在硝化微生物多样性及其作用机理、厌氧氨氧化过程和机理等研究方面取得了突破性进展.本文重点阐述了我国有关土壤硝化微生物方面的研究进展,在此基础上,简要介绍了反硝化微生物和厌氧氨氧化及硝酸盐异化还原成铵作用的研究进展,并对今后的研究工作提出了展望.今后土壤氮素转化微生物生态学的研究,应瞄准国际微生生态学发展的前沿,加强新技术新方法的应用,结合我国农业可持续发展、资源环境保护和全球变化研究的重大需求,重点开展以下几方面的工作:(1)开展大尺度上土壤硝化作用及氨氧化微生物分布的时空演变特征及驱动因子的研究;(2)加强氮素转化关键微生物过程与机理的研究,并与相关过程的通量(如氨挥发、N2O释放)和反应速率(如矿化速率、硝化速率)关联起来;(3)在特定生态系统中系统研究各个氮转化过程的耦合关系,构建相关氮素转化和氮素平衡模型,为定向调控土壤氮素转化过程,提高氮素利用效率并减少其负面效应提供科学依据.     

限氧自养硝化-反硝化生物脱氮新技术

限氧自养硝化—反硝化是部分硝化与厌氧氨氧化相耦联的生物脱氮反应过程,通过严格控制溶解氧在0．1～0．3mg·L^-1,实现硝化反应控制在亚硝酸阶段,然后以硝化阶段剩余的NH4^+作为电子供体,在厌氧条件下实现反硝化,该反应过程是完全的自养硝化—反硝化过程,具有能耗低、脱氮效率高、反应系统占地面积小等优点,适用于处理COD／NH4^+—N低的废水,是一种非常有应用前景的生物脱氮技术,文中详细介绍了限氧自养硝化—反硝化生物脱氮反应过程的研究进展,讨论了其微生物学机理及应用前景。     

微生物甲烷氧化反硝化耦合反应研究进展

甲烷氧化反硝化耦合过程是连接碳循环和氮循环的重要桥梁.该过程的深入研究有助于完善人们对全球碳氮生物化学循环的认识.甲烷作为反硝化外加气体碳源,既能调控大气甲烷平衡,有效减缓由甲烷引起的温室效应,又能降低反硝化工艺中因投入外加碳源带来的成本.因此近年来甲烷氧化反硝化耦合反应及其机理研究倍受关注.本文主要讨论了好氧和厌氧两种类型的甲烷氧化反硝化过程,重点对其微生物耦合反应机理及其影响因素进行了综述,同时指出了其工程化应用存在的问题,并对其应用前景提出展望.
     

湖泊氮素氧化及脱氮过程研究进展

自然界中氮的生物地球化学循环主要由微生物驱动,由固氮作用、硝化作用、反硝化作用和氨化作用来完成。过去数十年间,随着异养硝化、厌氧氨氧化和古菌氨氧化作用的发现,人们对环境中氮素循环认识逐步深入,提出了多种脱氮途径新假说。对湖泊生态系统中氮素的输入、输出及其在水体、沉积物和水土界面的迁移转化过程进行了概括,对湖泊生态系统中反硝化和厌氧氨氧化脱氮机理及脱氮效率的最新研究进展进行了探讨,并对以后的氮素循环研究进行了展望。     

海洋环境异养硝化-好氧反硝化菌的研究进展

异养硝化-好氧反硝化（heterotrophic nitrifying-aerobic denitrification,HN-AD）菌的发现打破了传统的脱氮理论,可以在有氧条件下同时进行硝化和反硝化,成为近年来的研究热点。HN-AD细菌在海洋氮循环中发挥着重要作用。本文对海洋环境中HN-AD菌的多样性和部分已知氮代谢途径及相关酶系进行了介绍,分析了盐度、碳氮比、溶解氧、pH等环境因素对HN-AD菌脱氮效果的影响,对其工艺和技术应用、前景和发展方向进行了综述和展望。     

Disturbance Decouples Biogeochemical Cycles Across Forests of the Southeastern US

Biogeochemical cycles are inherently linked through the stoichiometric demands of the organisms that cycle the elements. Landscape disturbance can alter element availability and thus the rates of biogeochemical cycling. Nitrification is a fundamental biogeochemical process positively related to plant productivity and nitrogen loss from soils to aquatic systems, and the rate of nitrification is sensitive to both carbon and nitrogen availability. Yet how these controls influence nitrification rates at the landscape scale is not fully elucidated. We, therefore, sampled ten watersheds with different disturbance histories in the southern Appalachian Mountains to examine effects on potential net nitrification rates. Using linear mixed model selection (AIC), we narrowed a broad suite of putative explanatory variables into a set of models that best explained landscape patterns in potential net nitrification. Forest disturbance history determined whether nitrification and nitrogen mineralization were correlated, with the effect apparently mediated by microbially available carbon. Undisturbed forests had higher available carbon, which uncoupled potential net nitrification from potential net nitrogen mineralization. In contrast, disturbed watersheds had lower available carbon, and nitrification rates were strongly correlated to those of nitrogen mineralization. These data suggest that a history of disturbance at the landscape scale reduces soil carbon availability, which increases ammonium availability to nitrifiers at the micro-scale. Landscape-level soil carbon availability then appears to determine the coupling of autotrophic (nitrification) and heterotrophic (nitrogen mineralization) biogeochemical processes, and hence the relationship between carbon and nitrogen cycling in soils.     

氨氧化古菌及其在氮循环中的重要作用

氨氧化作用作为硝化过程的第一步,是氮素生物地球化学循环的关键步骤.长期以来,变形菌纲卢和',亚群中的氨氧化细菌一直被认为是氨氧化作用的主要承担者.然而,近年来研究发现氨氧化古菌广泛存在于各种生态系统中,并且在数量上占明显优势,在氮素生物地球化学循环中起着非常重要的作用.本文概述了氨氧化古菌的形态、生理生态特性及其系统发育特征,对比分析了氨氧化古菌和氨氧化细菌的氨单加氧酶及其编码基因的异同,综述了氨氧化古菌在水生和陆地等生态系统氮素循环中的作用,同时就氨氧化古菌在应用生态和环境保护领域今后的研究重点进行了展望.     

Empirical Evidence Reveals Seasonally Dependent Reduction in Nitrification in Coastal Sediments Subjected to Near Future Ocean Acidification

Research so far has provided little evidence that benthic biogeochemical cycling is affected by ocean acidification under realistic climate change scenarios. We measured nutrient exchange and sediment community oxygen consumption (SCOC) rates to estimate nitrification in natural coastal permeable and fine sandy sediments under pre-phytoplankton bloom and bloom conditions. Ocean acidification, as mimicked in the laboratory by a realistic pH decrease of 0.3, significantly reduced SCOC on average by 60% and benthic nitrification rates on average by 94% in both sediment types in February (pre-bloom period), but not in April (bloom period). No changes in macrofauna functional community (density, structural and functional diversity) were observed between ambient and acidified conditions, suggesting that changes in benthic biogeochemical cycling were predominantly mediated by changes in the activity of the microbial community during the short-term incubations (14 days), rather than by changes in engineering effects of bioturbating and bio-irrigating macrofauna. As benthic nitrification makes up the gross of ocean nitrification, a slowdown of this nitrogen cycling pathway in both permeable and fine sediments in winter, could therefore have global impacts on coupled nitrification-denitrification and hence eventually on pelagic nutrient availability.     

The marine nitrogen cycle: recent discoveries,uncertainties and the potential relevance of climate change

The ocean''s nitrogen cycle is driven by complex microbial transformations, including nitrogen fixation, assimilation, nitrification, anammox and denitrification. Dinitrogen is the most abundant form of nitrogen in sea water but only accessible by nitrogen-fixing microbes. Denitrification and nitrification are both regulated by oxygen concentrations and potentially produce nitrous oxide (N₂O), a climate-relevant atmospheric trace gas. The world''s oceans, including the coastal areas and upwelling areas, contribute about 30 per cent to the atmospheric N₂O budget and are, therefore, a major source of this gas to the atmosphere. Human activities now add more nitrogen to the environment than is naturally fixed. More than half of the nitrogen reaches the coastal ocean via river input and atmospheric deposition, of which the latter affects even remote oceanic regions. A nitrogen budget for the coastal and open ocean, where inputs and outputs match rather well, is presented. Furthermore, predicted climate change will impact the expansion of the oceans'' oxygen minimum zones, the productivity of surface waters and presumably other microbial processes, with unpredictable consequences for the cycling of nitrogen. Nitrogen cycling is closely intertwined with that of carbon, phosphorous and other biologically important elements via biological stoichiometric requirements. This linkage implies that human alterations of nitrogen cycling are likely to have major consequences for other biogeochemical processes and ecosystem functions and services.     

Microbial functional structure of Montastraea faveolata,an important Caribbean reef‐building coral,differs between healthy and yellow‐band diseased colonies

A functional gene array (FGA), GeoChip 2.0, was used to assess the biogeochemical cycling potential of microbial communities associated with healthy and Caribbean yellow band diseased (YBD) Montastraea faveolata. Over 6700 genes were detected, providing evidence that the coral microbiome contains a diverse community of archaea, bacteria and fungi capable of fulfilling numerous functional niches. These included carbon, nitrogen and sulfur cycling, metal homeostasis and resistance, and xenobiotic contaminant degradation. A significant difference in functional structure was found between healthy and YBD M. faveolata colonies and those differences were specific to the physical niche examined. In the surface mucopolysaccharide layer (SML), only two of 31 functional categories investigated, cellulose degradation and nitrification, revealed significant differences, implying a very specific change in microbial functional potential. Coral tissue slurry, on the other hand, revealed significant changes in 10 of the 31 categories, suggesting a more generalized shift in functional potential involving various aspects of nutrient cycling, metal transformations and contaminant degradation. This study is the first broad screening of functional genes in coral‐associated microbial communities and provides insights regarding their biogeochemical cycling capacity in healthy and diseased states.     

Global patterns and controlling factors of soil nitrification rate

Soil nitrification, an important pathway of nitrogen transformation in ecosystems, produces soil nitrate that influences net primary productivity, while the by‐product of nitrification, nitrous oxide, is a significant greenhouse gas. Although there have been many studies addressing the microbiology, physiology, and impacting environment factors of soil nitrification at local scales, there are very few studies on soil nitrification rate over large scales. We conducted a global synthesis on the patterns and controlling factors of soil nitrification rate normalized at 25°C by compiling 3,140 observations from 186 published articles across terrestrial ecosystems. Soil nitrification rate tended to decrease with increasing latitude, especially in the Northern Hemisphere, and varied largely with ecosystem types. The soil nitrification rate significantly increased with mean annual temperature (MAT), soil nitrogen content, microbial biomass carbon and nitrogen, soil ammonium, and soil pH, but decreased with soil carbon:nitrogen and carbon:nitrogen of microbial biomass. The total soil nitrogen content contributed the most to the variations of global soil nitrification rate (total coefficient = 0.29) in structural equation models. The microbial biomass nitrogen (MBN; total coefficient = 0.19) was nearly of equivalent importance relative to MAT (total coefficient = 0.25) and soil pH (total coefficient = 0.24) in determining soil nitrification rate, while soil nitrogen and pH influenced soil nitrification via changing soil MBN. Moreover, the emission of soil nitrous oxide was positively related to soil nitrification rate at a global scale. This synthesis will advance our current understanding on the mechanisms underlying large‐scale variations of soil nitrification and benefit the biogeochemical models in simulating global nitrogen cycling.     

Spatial variability in nitrification rates and ammonia-oxidizing microbial communities in the agriculturally impacted Elkhorn Slough estuary, California

Ammonia oxidation-the microbial oxidation of ammonia to nitrite and the first step in nitrification-plays a central role in nitrogen cycling in coastal and estuarine systems. Nevertheless, questions remain regarding the connection between this biogeochemical process and the diversity and abundance of the mediating microbial community. In this study, we measured nutrient fluxes and rates of sediment nitrification in conjunction with the diversity and abundance of ammonia-oxidizing archaea (AOA) and ammonia-oxidizing betaproteobacteria (β-AOB). Sediments were examined from four sites in Elkhorn Slough, a small agriculturally impacted coastal California estuary that opens into Monterey Bay. Using an intact sediment core flowthrough incubation system, we observed significant correlations among NO(3)(-), NO(2)(-), NH(4)(+), and PO(4)(3+) fluxes, indicating a tight coupling of sediment biogeochemical processes. (15)N-based measurements of nitrification rates revealed higher rates at the less impacted, lower-nutrient sites than at the more heavily impacted, nutrient-rich sites. Quantitative PCR analyses revealed that β-AOB amoA (encoding ammonia monooxygenase subunit A) gene copies outnumbered AOA amoA gene copies by factors ranging from 2- to 236-fold across the four sites. Sites with high nitrification rates primarily contained marine/estuarine Nitrosospira-like bacterial amoA sequences and phylogenetically diverse archaeal amoA sequences. Sites with low nitrification rates were dominated by estuarine Nitrosomonas-like amoA sequences and archaeal amoA sequences similar to those previously described in soils. This is the first report measuring AOA and β-AOB amoA abundance in conjunction with (15)N-based nitrification rates in estuary sediments.     

Diversity, Physiology, and Niche Differentiation of Ammonia-Oxidizing Archaea

Nitrification, the aerobic oxidation of ammonia to nitrate via nitrite, has been suggested to have been a central part of the global biogeochemical nitrogen cycle since the oxygenation of Earth. The cultivation of several ammonia-oxidizing archaea (AOA) as well as the discovery that archaeal ammonia monooxygenase (amo)-like gene sequences are nearly ubiquitously distributed in the environment and outnumber their bacterial counterparts in many habitats fundamentally revised our understanding of nitrification. Surprising insights into the physiological distinctiveness of AOA are mirrored by the recognition of the phylogenetic uniqueness of these microbes, which fall within a novel archaeal phylum now known as Thaumarchaeota. The relative importance of AOA in nitrification, compared to ammonia-oxidizing bacteria (AOB), is still under debate. This minireview provides a synopsis of our current knowledge of the diversity and physiology of AOA, the factors controlling their ecology, and their role in carbon cycling as well as their potential involvement in the production of the greenhouse gas nitrous oxide. It emphasizes the importance of activity-based analyses in AOA studies and formulates priorities for future research.     

模拟增温对青藏高原东部高寒灌丛土壤氮转化的影响

本文研究了青藏高原东部窄叶鲜卑花高寒灌丛生长季前期、生长季后期和非生长季3个生育期的土壤氮转化速率对模拟增温的响应,分析全球气候变暖对高寒灌丛土壤氮循环过程的影响。结果表明: 模拟增温使高寒灌丛土壤温度显著升高1.2 ℃,土壤水分显著降低2.5%。高寒灌丛生长季土壤净氮矿化(氨化和硝化)速率显著高于非生长季,但土壤净氮固持速率显著低于非生长季。土壤氮矿化在生长季前期以硝化作用为主,在生长季后期和非生长季以氨化作用为主。模拟增温对高寒灌丛土壤氮转化过程的影响在不同时期存在显著差异。模拟增温显著增加了生长季前期土壤净氨化、净硝化、净氮矿化、净氮固持速率和非生长季土壤净硝化、净氮矿化速率,并显著降低了生长季后期土壤净硝化、净氮矿化、净氮固持速率和非生长季土壤净氨化速率。但模拟增温对高寒灌丛非生长季净氮固持速率和生长季后期净硝化速率的影响不显著。未来气候变暖将显著改变青藏高原东部高寒灌丛土壤氮转化,进而加速高寒灌丛土壤氮循环过程。