应用ABEEMσπ/GB-SA方法估算4个带电二肽的溶剂化自由能

采用B3LYP/6-311++G(d,p)理论水平优化获得体系的稳定几何结构.在相同的理论水平下,使用SMD溶剂模型,计算这些分子在水溶剂中的溶剂化自由能,并以其作为标准值.将各分子的稳定结构作为初始结构,在298 K、NVT系综下,应用ABEEMσπ可极化分子力场,对氨基酸侧链分子的水溶液进行分子动力学模拟,模拟的时间为1ns.平衡后的结构作为训练集,以调节和确定ABEEMσπ的相关参数,最终得到与从头计算相一致的溶剂化自由能.使用相同的参数,计算带电氨基酸二肽的溶剂化自由能,ABEEMσπ的计算结果与从头计算结果具有良好的一致性,表明该参数具有可转移性,这为研究多肽和蛋白质分子的溶剂化自由能奠定了基础.     

盐离子/二元混合溶液荧光光谱分析与计算

采用荧光光谱和理论计算对盐/二元混合溶剂体系溶剂化的影响进行研究,推测无机盐离子—N,N-二甲基甲酰胺(DMF)/乙醇和苯/乙醇二元混合溶剂体系中团簇分子的变化规律,并对可能存在的团簇分子采用密度泛函理论(DFT)的B3LYP和TD-B3LYP方法进行结构优化和激发能计算.得到无机盐离子在一定程度上改变混合溶剂间的作用力,使多聚体构型逐步转化为低聚体,Ca2+、Li+、Cl-都可以提高荧光效率,含有NO3-构型的团簇分子不易发生跃迁且震荡强度皆为零.     

乙酰胺-甲醇分子氢键团簇的理论研究

在MP2/6-31+G(d)水平上,对6种乙酰胺-甲醇分子氢键团簇构型进行几何全优化和振动频率计算,然后在MP2/6-311++G(2df,2p)水平上计算分子间相互作用能,并利用自然轨道理论探讨乙酰胺和甲醇相互作用的本质.通过自洽反应场理论中的Onsager溶剂模型,研究溶剂对乙酰胺-甲醇团簇几何构型、体系稳定性、电荷转移及偶极矩的影响.     

从定标粒子理论看溶剂分子参量对液相反应速率的影响

本文在已有工作的基础上,以定标粒子理论为理论基础,以乙酸乙酯在(水 乙醇)和(水 二甲亚砜)两种不同溶剂中的皂化反应为研究对象,对溶剂分子的各种参量对该反应的自由能变的贡献进行了理论计算,并对各参量的影响程度进行了讨论。总的结论与实验结果的一致性较好。     

计算机模拟探讨磺胺分子印迹聚合体系

磺胺主要用于抗菌消炎,但易产生耐药性.本文以磺胺(SNM)为模板,甲基丙烯酸(MAA)、丙烯酰胺(AM)、丙烯酸(AA)、三氟甲基丙烯酸(TFMAA)为功能单体,利用量子化学方法,采用DFT/B31YT/6-311++G**基组优化计算模板与功能单体的结构参数和能量来研究磺胺分子印迹聚合体系的不同功能单体和磺胺相互作用的强弱,结果表明,磺胺分子印迹体系的最佳功能单体为丙烯酰胺(AM).同时也计算模拟了分子印迹体系的溶剂化能大小,选择出了体系的最佳溶剂为三氯甲烷.研究结果对磺胺分子印迹的合成具有理论参考意义.     

含有dithiole-2-one的苯并噻吩基乙烯化合物光致变色反应的溶剂效应

采用B3LYP/6-311G方法及溶剂效应中的极化连续模型,对含有dithiole-2-one的二苯并噻吩基乙烯化合物(BTDO)进行了理论计算研究.并运用TD/B3LYP/6-311G方法计算了其电子吸收光谱,得到的最大吸收波长与气相中所得到的实验值相吻合;研究还发现第一激发三重态对应的是分子的HOMO→LUMO(π→π*)电子跃迁.通过分析其前线分子轨道,解释了不同溶剂下吸收光谱的差异.     

α-乙酰基二硫缩烯酮在TiCl4催化下的酰化反应机理研究

在B3LYP/6-311G(p)理论水平上研究α-乙酰基二硫缩烯酮在TiCl4催化下的酰化反应的微观反应机理.优化反应过程中的反应物、中间体、过渡态和产物的结构,同时采用了极化连续介质模型(PCM)对各个驻点进行了单点能计算以模拟在CH2Cl2溶剂中的反应过程,并且应用了自然轨道理论(NBO)和分子中的原子理论(AIM)分析了这些物质的成键特征和轨道间的相互作用.计算结果得到此反应在TiCl4催化情况下的活化能小于没有催化剂情况下的活化能,证明了在TiCl4催化剂参加的情况下有利于此反应的进行,溶剂效应也较大程度地降低了此反应的活化能.     

香豆素基化合物识别氟离子机制的密度泛函理论

采用密度泛函理论B3LYP/6-31G(d)方法优化计算以香豆素作为发色基团,胺基为氢键供体形成的化合物(1)及其在氟离子作用下生成的新化合物(2)的分子结构.应用含时密度泛函理论(TD-DFT)计算它们的气相和液相电子光谱,研究了计算方法和溶剂模型对理论光谱的影响.从理论上解释香豆素基化合物可用于识别氟离子的作用机理.在考虑溶剂效应条件下,采用B3LYP/6-31(d)方法优化分子构型后,利用TD-DFT方法获得的电子光谱与实验光谱吻合很好.     

胸腺嘧啶二醇脱氧核苷单分子糖苷键断裂的理论研究

采用理论计算方法对c is-(5S,6R)胸腺嘧啶二醇脱氧核苷(dTg)单分子糖苷键断裂的热力学和动力学性质进行了研究.在气相中,所有稳定点的几何构型都采用B3LYP/6-31+G(d,p)方法进行全优化,并利用导电极化连续模型对气相优化构型进行单点计算确定水的溶剂效应,作者主要考虑了直接断裂和抽氢断裂两条路径.计算结果表明:两条反应机理均涉及较高的活化能,从而说明单分子分解并不能促进糖苷键的断裂,该研究为生物体内这一重要反应提供了更多有用的信息.     

鱼类Ⅱ型抗冻蛋白-冰-水复合体系的理论模拟研究

对鱼类Ⅱ型抗冻蛋白冰晶组成的复合体系在真空条件下进行理论模拟计算的基础上,构建出鱼类Ⅱ型抗冻蛋白冰溶剂(水)的三元复合体系.经过350 ps的动态模拟,研究了溶剂化效应对蛋白冰相互作用体系的影响.通过分子力学及半经验量子力学的计算,进一步研究蛋白与冰晶的相互作用性质,结果表明溶剂化效应具有不容被忽视的重要作用.     

Markedness and its Interpretation in Language Use

Language markedness is a common phenomenon in languages, and is reflected from hearing, vision and sense, i.e. the variation in the three aspects such as phonology, morphology and semantics. This paper focuses on the interpretation of markedness in language use following the three perspectives, i.e. pragmatic interpretation, psychological interpretation and cognitive interpretation, with an aim to define the function of markedness.     

Characterization of Ordovician carbonate reservoirs, southeastern Saskatchewan, Canada

The discovery of the prolific Ordovician Red River reservoirs in 1995 in southeastern Saskatchewan was the catalyst for extensive exploration activity which resulted in the discovery of more than 15 new Red River pools. The best yields of Red River production to date have been from dolomite reservoirs. Understanding the processes of dolomitization is, therefore, crucial for the prediction of the connectivity, spatial distribution and heterogeneity of dolomite reservoirs.The Red River reservoirs in the Midale area consist of 3～4 thin dolomitized zones, with a total thickness of about 20 m, which occur at the top of the Yeoman Formation. Two types of replacement dolomite were recognized in the Red River reservoir: dolomitized burrow infills and dolomitized host matrix. The spatial distribution of dolomite suggests that burrowing organisms played an important role in facilitating the fluid flow in the backfilled sediments. This resulted in penecontemporaneous dolomitization of burrow infills by normal seawater. The dolomite in the host matrix is interpreted as having occurred at shallow burial by evaporitic seawater during precipitation of Lake Almar anhydrite that immediately overlies the Yeoman Formation. However, the low δ18O values of dolomited burrow infills (-5.9‰～ -7.8‰, PDB) and matrix dolomites (-6.6‰～ -8.1‰, avg. -7.4‰ PDB) compared to the estimated values for the late Ordovician marine dolomite could be attributed to modification and alteration of dolomite at higher temperatures during deeper burial, which could also be responsible for its 87Sr/86Sr ratios (0.7084～0.7088) that are higher than suggested for the late Ordovician seawaters (0.7078～0.7080). The trace amounts of saddle dolomite cement in the Red River carbonates are probably related to "cannibalization" of earlier replacement dolomite during the chemical compaction.     

A computer generator for randomly layered structures

AcomputergeneratorforrandomlylayeredstructuresYUJia shun1,2,HEZhen hua2(1.TheInstituteofGeologicalandNuclearSciences,NewZealand;2.StateKeyLaboratoryofOilandGasReservoirGeologyandExploitation,ChengduUniversityofTechnology,China)Abstract:Analgorithmisintrod…     

低渗透非均质砂岩油藏启动压力梯度研究

理论推导与室内实验相结合,建立了低渗透非均质砂岩油藏启动压力梯度确定方法。首先借助油藏流场与电场相似的原理,推导了非均质砂岩油藏启动压力梯度计算公式。其次基于稳定流实验方法,建立了非均质砂岩油藏启动压力梯度测试方法。结果表明:低渗透非均质砂岩油藏的启动压力梯度确定遵循两个等效原则。平面非均质油藏的启动压力梯度等于各级渗透率段的启动压力梯度关于长度的加权平均;纵向非均质油藏的启动压力梯度等于各渗透率层的启动压力梯度关于渗透率与渗流面积乘积的加权平均。研究成果可用于有效指导低渗透非均质砂岩油藏的合理井距确定,促进该类油藏的高效开发。     

On Tragic Consciousness In The Works By Ernest Hemingway

As an American modern novelist who were famous in the literary world, Hemingway was not a person who always followed the trend but a sharp observer. At the same time, he was a tragedy maestro, he paid great attention on existence, fate and end-result. The dramatis personae's tragedy of his works was an extreme limit by all means tragedy on the meaning of fearless challenge that failed. The beauty of tragedy was not produced on the destruction of life, but now this kind of value was in the impact activity. They performed for the reader about the tragedy on challenging for the limit and the death.     

海南岛地体及其毗邻陆缘晚中生代—新生代古地磁研究和构造演化

本文叙述了对海南岛及其毗邻大陆边缘白垩纪到第四纪地层岩石进行古地磁研究的全部工作过程。通过分析岩石中剩余磁矢量的磁偏角及磁倾角的变化,提出海南岛白垩纪以来经历的构造演化模式如下:早期伴随顺时针旋转而向南迁移,后期伴随逆时针转动并向北运移。联系该地区及邻区的地质、地球物理资料,对海南岛上述的构造地体运动提出以下认识:北部湾内早期有一拉张作用,主要是该作用使湾内地壳显著伸长减薄,形成北部湾盆地。从而导致了海南岛的早期构造运动,而海南岛后期的构造运动则主要是受南海海底扩张的影响。海南地体运动规律的阐明对于了解北部湾油气盆地的形成演化有重要的理论和实际意义。     

An Index mechanism for multi-scale view in spatial databases

There are numerous geometric objects stored in the spatial databases. An importance function in a spatial database is that users can browse the geometric objects as a map efficiently. Thus the spatial database should display the geometric objects users concern about swiftly onto the display window. This process includes two operations:retrieve data from database and then draw them onto screen. Accordingly, to improve the efficiency, we should try to reduce time of both retrieving object and displaying them. The former can be achieved with the aid of spatial index such as R-tree, the latter require to simplify the objects. Simplification means that objects are shown with sufficient but not with unnecessary detail which depend on the scale of browse. So the major problem is how to retrieve data at different detail level efficiently. This paper introduces the implementation of a multi-scale index in the spatial database SISP (Spatial Information Shared Platform) which is generalized from R-tree. The difference between the generalization and the R-tree lies on two facets: One is that every node and geometric object in the generalization is assigned with a importance value which denote the importance of them, and every vertex in the objects are assigned with a importance value,too. The importance value can be use to decide which data should be retrieve from disk in a query. The other difference is that geometric objects in the generalization are divided into one or more sub-blocks, and vertexes are total ordered by their importance value. With the help of the generalized R-tree, one can easily retrieve data at different detail levels.Some experiments are performed on real-life data to evaluate the performance of solutions that separately use normal spatial index and multi-scale spatial index. The results show that the solution using multi-scale index in SISP is satisfying.     

《Chinese Science Bulletin》SUBJECT INDEX TO VOLUME 59(2014)

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Achieving Unusual States of Matter Under High Pressure

The elongation method,originally proposed by Imamura was further developed for many years in our group.As a method towards O(N)with high efficiency and high accuracy for any dimensional systems.This treatment designed for one-dimensional(ID)polymers is now available for three-dimensional(3D)systems,but geometry optimization is now possible only for 1D-systems.As an approach toward post-Hartree-Fock,it was also extended to     

Exciton Seebeck in Molecular Systems

Various applications relevant to the exciton dynamics,such as the organic solar cell,the large-area organic light-emitting diodes and the thermoelectricity,are operating under temperature gradient.The potential abnormal behavior of the exicton dynamics driven by the temperature difference may affect the efficiency and performance of the corresponding devices.In the above situations,the exciton dynamics under temperature difference is mixed with