Distribution,abundance and growth of juvenile salmonids off the coast of Oregon and Washington,summer (1980)

Juvenile salmonids (< 50 cm) were sampled by purse seine off the Pacific coast from Tillamook Bay, Oregon, to Copalis Head, Washington, during the period May through September (1980). Temporal distribution and abundance of the major Columbia River species were determined. Spring chinook salmon (Oncorhynchus tshatuytscha) and steel head (Salmo gairdneri) were present only during early cruises and were distributed almost entirely in the Columbia River plume and the sample area to the north. Coho salmon (O. kisutch) and fall chinook salmon were distributed more uniformly throughout the sampling area and were relatively abundant throughout the sampling period. Concentrations of fish were found only within 28 km of the shore. A number of fish that had been marked before or during their outmigration from the Columbia River system were recaptured. It appeared possible that with concentrated sampling in areas with high fish abundances, sufficient numbers of marked juvenile salmonids could be captured to provide relative survival estimates between different stocks of Columbia River fish.     

Plasma insulin-like growth factor-I concentrations in yearling chinook salmon (Oncorhynchus tshawytscha) migrating from the Snake River Basin, USA

During the parr-to-smolt transformation (smoltification) of juvenile salmonids, preadaptive changes in osmoregulatory and ionoregulatory ability are regulated in part by the growth hormone (GH)/insulin-like growth factor-I (IGF-I) axis. If food intake is sufficient, plasma IGF-I increases during smoltification. On the other hand, plasma IGF-I typically decreases in fasting fish and other vertebrate animals. Because food availability is limited for juvenile salmonids undertaking an extended 6- to 12-week springmigration to and through the Snake-Columbia River hydropower system (northwestern USA), IGF-I concentrations might be expected to decrease, potentially compromising seawater tolerance. To address this possibility,yearling chinook salmon Oncorhynchus tshawytscha reared in three Snake River Basin hatcheries were sampled before release and at two downstream dams. Dry masses ofmigrating fish either did not increase during themigration (in 2000, an average-flow year), or decreased significantly (in 2001, a low-flow year). In both years, plasma IGF-I levels were significantly higher (1.6-fold in 2000, 3.7-fold in 2001) for fish sampled at the last dam on the lower Columbia River than for fish sampled prior to release. Plasma IGF-I concentrations inmigrating fish may, nonetheless, have been nutritionally down-regulated to some degree, because plasma IGF-I concentrations in juvenile chinook salmon captured at a Snake River dam and transported to the laboratory increased in fed groups, but decreased in unfed groups. The ability ofmigrating smolts to maintain relatively elevated IGF-I levels despiteRestricted food intake and loss of body mass is likely related to smoltification-associated changes in hormonal balance.     

Prey selectivity and diel feeding chronology of juvenile chinook (Oncorhynchus tshawytscha) and coho (O. kisutch) salmon in the Columbia River plume

We studied salmon feeding selectivity and diel feeding chronology in the Columbia River plume. Juvenile chinook and coho salmon were caught by trawling at 2–3 h intervals throughout a diel period on three consecutive days (21–23 June 2000) at stations located 14.8 and 37 km offshore from the mouth of the Columbia River. A total of 170 chinook salmon were caught at the inshore and 79 chinook and 98 coho salmon were caught at the offshore station. After each trawl, potential prey were sampled at different depths with 2–3 different types of nets (1‐m diameter ring net, bongo net, neuston net). Despite the variability in zooplankton abundance, feeding selectivity was surprisingly constant. Both salmon species fed selectively on larger and pigmented prey such as hyperiid amphipods, larval and juvenile fish, various crab megalopae, and euphausiids. Hyperiid amphipods were abundant in the salmon diets and we hypothesize that aggregations of gelatinous zooplankton may facilitate the capture of commensal hyperiid amphipods. Small copepods and calyptopis and furcilia stages of euphausiids dominated the prey field by numbers, but were virtually absent from salmon diet. Juvenile chinook salmon, with increasing body size, consumed a larger proportion of fish. Stomach fullness peaked during morning hours and reached a minimum at night, suggesting a predominantly diurnal feeding pattern. In general, both chinook and coho salmon appear to be selective, diurnal predators, preying mostly on large and heavily pigmented prey items, in a manner consistent with visually oriented, size‐selective predation.     

The effects of the 1983 El Niño on Oregon's Coho (Oncorhynchus kisutch) and Chinook (O. tshawytscha) Salmon

The 1983 El Niño event off the Pacific Coast of North America resulted in increased adult mortality and decreased average size for Oregon's coho and chinook salmon. Actual return of adult coho salmon to the Oregon Production Area in 1983 was only 42% of the pre-season prediction. Coho smolts entering the ocean in the spring of 1983 also survived poorly, resulting in low adult returns again in 1984. Abundance of chinook stocks in southern Oregon was also reduced, as was abundance of Columbia River chinook stocks that show localized ocean distribution. Northerly migrating chinook stocks from the Columbia River showed little or no decline in abundance. The average weight of coho and chinook salmon landed in 1983 by Oregon's commercial troll fishery was the lowest recorded since statistics were first recorded in 1952. Comparison of the length-weight relationship for these fish indicated coho and chinook were in poorer condition in 1983 than in non-El Niño years. Because adult coho salmon returned to hatcheries at a smaller size, the fecundity (eggs per female) in 1983 was reduced from the 1978–1982 average by 24% at coastal hatcheries and by 27% at Columbia River hatcheries. The fecundity of chinook salmon was unchanged at most hatcheries.     

The Fraser River plume: some preliminary observations on the distribution of juvenile salmon, herring, and their prey

Zooplankton and fish densities in the southern Strait of Georgia were observed to coincide with variations in surface salinities resulting from the outflow of the Fraser River. Vertical net hauls in the euphotic zone revealed that copepods, amphipods, and euphausiids were significantly more abundant per m³ in the brackish estuarine plume (surface salinities - 10–15 ppt) when compared to the area covered by the freshwater of the Fraser River plume (0–10 ppt) and the region of the Strait of Georgia (25–30 ppt) unaffected by the outflow of the Fraser River.
The estuarine and riverine plumes had significantly higher fish densities (adult and juvenile herring, and juvenile salmonids [excluding chinook]) than the Strait of Georgia region, with no significant differences in densities of juvenile chinook salmon observed between regions. The highest catches of juvenile salmonids were at the boundary between the estuarine plume and the Strait of Georgia. Zooplankton found in the stomach contents of both adult and juvenile herring suggested that the herring were filter-feeding on the zooplankton in the estuarine plume. Juvenile salmonids fed primarily on small unidentifiable juvenile fish. The existence of increased densities of prey items in the estuarine plume is proposed to be the primary mechanism resulting in increased residence time in this region by outmigrating juvenile salmonids. Utilization of aggregated zooplankton could lead to increased salmonid growth rates and therefore to enhanced survival of individuals utilizing the Fraser River plume environment.     

Importance of river migration to the development of seawater tolerance in Columbia River anadromous salmonids

Gradually increasing levels of gill Na⁺K⁺ ATPase activity were observed in juvenile chinook, Oncorhynchus tshawytscha, and coho, Oncorhynchus kisutch, salmon and steelhead trout, Salmo gairdneri, undergoing parr-smolt transformation in artificial rearing facilities on the Columbia River. Portions of the same populations released to migrate seaward, however, generally showed much greater increases in enzyme activity with time and distance from the release point. After migrating 714 km to the Columbia River estuary, spring chinook salmon had a mean gill Na⁺K⁺ ATPase activity 2.5 times greater than fish retained at the hatchery and 1.9 times greater than fish adapted to 28 ppt seawater for 208 days. Similar observations were made on coho salmon.     

Ocean distribution and habitat associations of yearling coho (Oncorhynchus kisutch) and Chinook (O. tshawytscha) salmon in the northern California Current

Yearling juvenile coho and Chinook salmon were sampled on 28 cruises in June and September 1981–85 and 1998–07 in continental shelf and oceanic waters off the Pacific Northwest. Oceanographic variables measured included temperature, salinity, water depth, and chlorophyll concentration (all cruises) and copepod biomass during the cruises from 1998–07. Juvenile salmonids were found almost exclusively in continental shelf waters, and showed a patchy distribution: half were collected in ～5% of the collections and none were collected in ～40% of the collections. Variance‐to‐mean ratios of the catches were high, also indicating patchy spatial distributions for both species. The salmon were most abundant in the vicinity of the Columbia River and the Washington coast in June; by September, both were less abundant, although still found mainly off Washington. In June, the geographic center‐of‐mass of the distribution for each species was located off Grays Harbor, WA, near the northern end of our sampling grid, but in September, it shifted southward and inshore. Coho salmon ranged further offshore than Chinook salmon: in June, the average median depth where they were caught was 85.6 and 55.0 m, respectively, and in September it was 65.5 and 43.7 m, respectively. Abundances of both species were significantly correlated with water depth (negatively), chlorophyll (positively) and copepod biomass (positively). Abundances of yearling Chinook salmon, but not of yearling coho salmon, were correlated with temperature (negatively). We discuss the potential role of coastal upwelling, submarine canyons and krill in determining the spatial distributions of the salmon.     

Introduced northern pike predation on salmonids in southcentral Alaska

Northern pike (Esox lucius) are opportunistic predators that can switch to alternative prey species after preferred prey have declined. This trophic adaptability allows invasive pike to have negative effects on aquatic food webs. In Southcentral Alaska, invasive pike are a substantial concern because they have spread to important spawning and rearing habitat for salmonids and are hypothesised to be responsible for recent salmonid declines. We described the relative importance of salmonids and other prey species to pike diets in the Deshka River and Alexander Creek in Southcentral Alaska. Salmonids were once abundant in both rivers, but they are now rare in Alexander Creek. In the Deshka River, we found that juvenile Chinook salmon (Oncorhynchus tshawytscha) and coho salmon (O. kisutch) dominated pike diets and that small pike consumed more of these salmonids than large pike. In Alexander Creek, pike diets reflected the distribution of spawning salmonids, which decrease with distance upstream. Although salmonids dominated pike diets in the lowest reach of the stream, Arctic lamprey (Lampetra camtschatica) and slimy sculpin (Cottus cognatus) dominated pike diets in the middle and upper reaches. In both rivers, pike density did not influence diet and pike consumed smaller prey items than predicted by their gape‐width. Our data suggest that (1) juvenile salmonids are a dominant prey item for pike, (2) small pike are the primary consumers of juvenile salmonids and (3) pike consume other native fish species when juvenile salmonids are less abundant. Implications of this trophic adaptability are that invasive pike can continue to increase while driving multiple species to low abundance.     

Introduced northern pike consumption of salmonids in Southcentral Alaska

The impacts of introduced northern pike (Esox lucius) on salmonid populations have attracted much attention because salmonids are popular subsistence, sport and commercial fish. Concern over the predatory effects of introduced pike on salmonids is especially high in Southcentral Alaska, where pike were illegally introduced to the Susitna River basin in the 1950s. We used pike abundance, growth, and diet estimates and bioenergetics models to characterise the realised and potential consumptive impacts that introduced pike (age 2 and older) have on salmonids in Alexander Creek, a tributary to the Susitna River. We found that juvenile salmonids were the dominant prey item in pike diets and that pike could consume up to 1.10 metric tons (realised consumption) and 1.66 metric tons (potential consumption) of juvenile salmonids in a summer. Age 3–4 pike had the highest per capita consumption of juvenile salmonids, and age 2 and age 3–4 pike had the highest overall consumption of juvenile salmonid biomass. Using historical data on Chinook salmon and pike potential consumption of juvenile salmonids, we found that pike consumption of juvenile salmonids may lead to collapsed salmon stocks in Alexander Creek. Taken together, our results indicate that pike consume a substantial biomass of juvenile salmonids in Alexander Creek and that coexistence of pike and salmon is unlikely without management actions to reduce or eliminate introduced pike.     

Ichthyophonus hoferi Plehn & Mulsow in British Columbia stocks of Pacific herring, Clupea pallasi Valenciennes, and its infectivity to chinook salmon, Oncorhynchus tshawytscha (Walbaum)

Pacific herring, Clupea pallasi Valenciennes, collected from three areas of coastal British Columbia were screened for Ichthyophonus by histological examination. The infectivity of Ichthyophonus to juvenile chinook salmon, Oncorhynchus tshawytscha (Walbaum), was examined in laboratory studies. Ichthyophonus was detected in a total of 82 of 356 herring from all three areas. Prevalence in 2000 and 2001 ranged from 10.5 to 52.5% and was significantly lower in more northern (Hecate Strait) samples. Ichthyophonus was detected by histological examination in chinook salmon following oral or intraperitoneal (i.p.) exposure to homogenates of infected herring tissue. Infections in Yukon stock chinook salmon were occasionally associated with mortality and with inflammation in all tissues examined. Infections were detected significantly more frequently in the caecal mesenteries of i.p.-infected compared with oral-infected chinook salmon. The distribution and prevalence of Ichthyophonus isolates among diverse host species may assist in stock identification and in an improved understanding of trophic interactions.     

A survey of microparasites present in adult migrating Chinook salmon (Oncorhynchus tshawytscha) in south‐western British Columbia determined by high‐throughput quantitative polymerase chain reaction

Microparasites play an important role in the demography, ecology and evolution of Pacific salmonids. As salmon stocks continue to decline and the impacts of global climate change on fish populations become apparent, a greater understanding of microparasites in wild salmon populations is warranted. We used high‐throughput, quantitative PCR (HT‐qRT‐PCR) to rapidly screen 82 adult Chinook salmon from five geographically or genetically distinct groups (mostly returning to tributaries of the Fraser River) for 45 microparasite taxa. We detected 20 microparasite species, four of which have not previously been documented in Chinook salmon, and four of which have not been previously detected in any salmonids in the Fraser River. Comparisons of microparasite load to blood plasma variables revealed some positive associations between Flavobacterium psychrophilum, Cryptobia salmositica and Ceratonova shasta and physiological indices suggestive of morbidity. We include a comparison of our findings for each microparasite taxa with previous knowledge of its distribution in British Columbia.     

Environmental conditions and physiological state influence estuarine movements of homing sockeye salmon

The reproductive migration of anadromous salmonids through estuarine waters is one of the most challenging stages of their life cycle, yet little is known about the environmental and physiological conditions that influence migratory behaviour. We captured, sampled tissues, tagged and released 365 sockeye salmon (Oncorhynchus nerka) homing through inner coastal waters towards the Fraser River, British Columbia, Canada. Biotelemetry was used to assess the behaviour of individual sockeye salmon approaching estuarine waters and at river entry, which were related to both fish physiological condition at release and to prevailing environmental conditions. Sockeye salmon tended to stay close to the shore, migrated during the day, and movements were related to tide. Sockeye salmon migration rate was linked to wind‐induced currents, salinity and an individual's physiological state, but these factors were specific to location and stock. We propose that wind‐induced currents exposed sockeye salmon entering the estuary to stronger olfactory cues associated with Fraser River water, which in turn resulted in faster migration rates presumably due to either an increased ability for olfactory navigation and/or advanced reproductive schedule through a neuroendocrine response to olfactory cues. However, once the migration had progressed further into more concentrated freshwater of the river plume, sockeye salmon presumably used wind‐induced currents to aid in movements towards the river, which may be associated with energy conservation. Results from this study improve our biological understanding of the movements of Fraser River sockeye salmon and are also broadly relevant to other anadromous salmonids homing in marine environments.     

Evaluation of a stimulus-response method for distinguishing out-migrant salmonids from drifting debris for sonar counts in the Trinity River,California

A method for discriminating fish from debris in sonar counts of out-migrant salmonids was tested in the Trinity River, California. The method used induced fish movements to distinguish fish from drifting debris. Electricity and light served as stimuli and video and split-beam sonar were used to measure movements of fish (mainly juvenile chinook salmon) and debris (mainly tree leaves). Differences in fish and debris behavior were clearly observable with underwater video. Many fish darted or slowed and most fish dove, whereas debris drifted passively. Fish responded to the electric field inconsistently, and an apparent positive phototaxis was the most consistent response to stimuli. Lack of matched sonar and video observations of individual targets prevented direct testing of sonar’s ability to differentiate fish and debris in the Trinity River. However, analysis of sonar data from a similar situation in the Seton River, British Columbia, indicate that fish responses measured in the Trinity River by video were within the resolution of split-beam sonar. Split-beam position measurement error averaged ≤ 0.06 m within 5° of the acoustic axis, compared to a mean diving reaction of 0.11 m by salmonids observed with video. Proper transducer deployment, improved sonar analysis methods, and perfection of stimuli to elicit obvious and consistent fish responses are key to the success of this technique. With suitable development and validation, the stimulus-response method could become a useful tool for apportioning sonar counts among fish and debris.     

Diets of top predators indicate pelagic juvenile rockfish (Sebastes spp.) abundance in the California Current System

Diets of top predators may be useful indicators to the availability of forage fish in marine ecosystems. Juvenile rockfish (young‐of‐the‐year Sebastes spp.) compose a significant part of the diet for many predators in the central California Current, including chinook salmon (Oncorhynchus tshawytscha), and several species of marine birds and mammals. Herein, we develop annual indices of juvenile rockfish relative abundance by collating time series data sets on: (i) the proportion of rockfish in the diet of three species of seabirds breeding on Southeast Farallon Island (1975–2002); (ii) the number of rockfish in chinook salmon stomachs (1980–99); and (iii) the abundance of rockfish captured in scientific mid‐water trawl net surveys (1983–2002). We used Principal Component Analysis (PCA) to combine indices, and refer to these as ‘Multivariate Rockfish Indices’ (MRI). Combining time series verifies the patterns shown by each alone and provides a synoptic perspective on juvenile rockfish relative abundance. The diets of predators with the largest foraging ranges (Common Murre, Uria aalge) and chinook salmon co‐varied strongly with the net samples, and appear to be the best indicators. The salmon also sampled species of Sebastes not caught in the nets. The MRI reveals interannual variability in juvenile rockfish abundance, a substantial decline in abundance in the 1990s, and a partial recovery in the early 2000s. Predator‐based sampling is a cost‐effective enhancement of scientific net sampling.     

Density of juvenile brown trout and Atlantic salmon in natural and man-made riverine habitats

The density of juvenile brown trout (Sulmo trutta L.) and Atlantic salmon (Salmo salar L.) was significantly higher along river bank areas protected against erosion than along natural river banks in the River Gaula, Central Norway. A habitat shift appeared in Atlantic salmon, and a behavioural shift was demonstrated by brown trout from August October. The effect of habitat on densities of juvenile salmonids should be taken into account as mitigation measures on eroded river banks and when assessing fish production in rivers.     

Juvenile chinook salmon (Oncorhynchus tshawytscha) growth on the central California coast during the 1998 El Niño and 1999 La Niña

We assessed growth in subyearling chinook salmon (Oncorhynchus tshawytscha) during the 1998 El Niño and 1999 La Niña in the Gulf of the Farallones, a region of the continental shelf off central California seaward of the Golden Gate and the southernmost ocean entry point for the species in North America. Juvenile salmon demonstrated greater growth during this strong El Niño, when water temperature anomalies of more than +3°C were recorded at local buoys, than during the similarly strong 1999 La Niña. Slopes of regressions of weight on length, length on age, and weight on age were all significantly greater for juvenile salmon during the 1998 El Niño compared with those in the 1999 La Niña. Daily otolith increment widths, an estimator of somatic growth, corroborated population data. Between June 1 and August 9, mean increment widths for juvenile chinook salmon in 1998 were 3.54 ± 0.03 μm, significantly larger than the 3.13 ± 0.03 μm found in juveniles during the same time interval in 1999. Condition factor for juvenile chinook salmon entering the ocean at the Golden Gate was the same in both years, but became significantly greater in ocean fish during the 1998 El Niño than in ocean fish during the 1999 La Niña. Energy storage was significantly greater in ocean juvenile salmon during the 1998 El Niño as well. Mean triacylglycerol/cholesterol ratios increased following ocean entry in 1998, whereas they declined in ocean juveniles during 1999. Thus, not only was growth better in the El Niño period compared with La Niña, but lipid accumulation was also better. Oceanographic data for 1998 indicated elevated temperatures, lower salinity, greater freshwater outflow from San Francisco Bay, northerly flowing coastal currents, and positive upwelling index anomalies. This combination of environmental factors resulted in greater zooplankton productivity that, in conjunction with higher temperatures, allowed metabolic processes to enhance growth. Although El Niño events have certainly produced large-scale, and often adverse, effects on ecosystems, the results of this study emphasize the importance of local oceanographic conditions to growth and other physiological and ecological processes.     

Diel distribution,behaviour and consumption of juvenile Chinook salmon (Oncorhynchus tshawytscha) in a Wilderness stream

Abstract – Understanding population regulation in juvenile salmonids requires distinguishing the effects of intrinsic (size, behaviour) and extrinsic (food, competition) factors. To examine the relative influence of these variables on juvenile Chinook salmon (Oncorhynchus tshawytscha) in the Salmon River drainage (ID, USA), we examined diel differences in foraging microhabitats, behaviour and consumption in two areas with consistent differences in parr‐to‐smolt survival. In lower Big Creek (LBC, high‐survival area) and upper Big Creek (UBC, low‐survival area), we observed fish by snorkelling, recording length, behaviour (foraging rate and aggression) and physical (depth, velocity, cover, temperature) and biotic (density, size and species of neighbouring fish) microhabitat features. Stomach contents were extracted to estimate consumption. Depth and temperature were greater in LBC, where Chinook salmon were significantly larger and present at lower densities. Fish in LBC exhibited higher foraging activity during the day than night, but there were no size differences between day and night foragers. In UBC, a higher density area, foraging behaviour did not change between day and night, although the smallest size classes did not forage nocturnally. Regression models that integrated physical and biotic variables suggested that physical factors influenced foraging in both areas, but competition also affected foraging in UBC. Our results demonstrate that fish from low‐ and high‐survival populations in Big Creek are exposed to different physical and biological influences during their first growth season, which are reflected in different diel foraging behaviours.     

Ecology and movement of juvenile salmonids in beaver-influenced and beaver-free tributaries in the Trøndelag province of Norway

There is concern that expanding beaver (Castor fiber) populations will negatively impact the important economic, recreational and ecological resources of Atlantic salmon (Salmo salar) and sea trout (Salmo trutta) populations in Europe. We studied how beaver dams influenced habitat, food resources, growth and movement of juvenile Atlantic salmon and trout on three paired beaver-dammed and beaver-free (control) tributaries of important salmon rivers in central Norway. Lotic reaches of beaver-dammed and control sites were similar in habitat and benthic prey abundance, and ponds were small (<3,000 m²). Though few juvenile salmonids were detected in ponds, trout and salmon were present in habitats below and above ponds (comprising 9%–31% and 0%–57% of the fish collected respectively). Trout dominated control sites (79%–99%), but the greatest proportion of Atlantic salmon were upstream of beaver ponds (0%–57%). Growth rates were highly variable, with no differences in growth between lotic reaches of beaver-dammed and control sites. The condition and densities of juvenile salmon and trout were similar in lotic reaches of beaver-dammed and control sites, though one beaver-dammed site with fine sediment had very few juvenile salmonids. Beaver dams did not block the movement of juvenile salmonids or their ability to use upstream habitats. However, the degree of repeated movements and the overall proportion of fish moving varied between beaver-dammed and control sites. The small scale of habitat alteration and the fact that fish were able to move past dams makes it unlikely that beaver dams negatively impact the juvenile stage of salmon or trout populations.     

Geographical patterns of straying of fall chinook salmon,Oncorhynchus tshawytscha (Walbaum), from Columbia River (USA) hatcheries

The large-scale spatial patterns of straying of marked chinook salmon, Oncorhynchus tshawytscha (Walbaum), produced at hatcheries in the Columbia River (north-west USA) are described. Straying rates were extremely variable among hatcheries (from 1% to 95%). Fish produced near the mouth of the river strayed more commonly than those produced farther upriver. While the large-scale straying patterns were well explained by the distance between the hatchery of origin and alternative destinations, substantial deviations from this pattern were observed at smaller scales. Three distinct areas of origin were identified and most straying occurred between hatcheries and natural spawning grounds within each area. The location of the stream where the hatchery of origin is located affects the patterns of straying. Fish reared at hatcheries in the main stem of the river did not stray into tributaries as often as predicted by a model based exclusively on linear distance between alternative locations. Likewise, fish released from large tributaries strayed to main stem hatcheries less often than predicted by the model. Fish produced at hatcheries on north bank tributaries appeared to stray less into southern streams than fish released from southern streams. These findings indicate that salmon are more likely to stray to spawning areas similar to their natal site than to dissimilar sites, in addition to the tendency to stray to nearly sites. In addition to the general patterns, examination of data from two types of transplants indicated that there is a genetic component to homing/straying behaviour within the watershed. However, salmon transplanted into the Columbia River watershed from elsewhere showed homing precision comparable to that of local fish, although they retained their ancestral marine distribution.     

Above parr: Lowland river habitat characteristics associated with higher juvenile Atlantic salmon (Salmo salar) and brown trout (S. trutta) densities

Understanding juvenile salmonid habitat requirements is critical for their effective management, but little is known about these requirements in lowland rivers, which include important but unique salmonid habitats. We compared the relative influence of in-stream Ranunculus cover, water depth, prey abundance, distance upstream and two previously unexplored factors (water velocity heterogeneity and site colonisation potential) on summer densities of juvenile Atlantic salmon and brown trout. We applied electrofishing, habitat surveys and macroinvertebrate kick sampling, and calculated the site colonisation potential from salmon redd surveys across 18–22 sites in a lowland river in 2015–2017. Due to a recruitment crash in 2016, models including and excluding this unusual year were explored. Excluding 2016 data, juvenile salmon densities showed a positive association with Ranunculus cover and numbers of nearby upstream redds, and a negative association with distance upstream from the tidal limit. Trout densities were positively associated with velocity heterogeneity, indicating a potential indirect influence of Ranunculus mediated by water velocity. When including 2016, year had the largest effect on densities of both species, highlighting the impact of the recruitment failure. These findings uncover interspecific differences in the habitat requirements of juvenile salmonids in lowland rivers. Velocity heterogeneity and site colonisation potential had high explanatory power, highlighting that they should be considered in future studies of habitat use. These findings demonstrate that temporal replication and recruitment dynamics are important considerations when exploring species–habitat associations. We discuss potential management implications and argue that Ranunculus cover could be an important management tool in conservation of lowland salmonids.