bmy基因敲除对解淀粉芽孢杆菌Q-426溶血性及抗菌活性的影响

Iturin家族环脂肽对于红色毛癣菌等病原真菌具有较强的抑菌活性,有潜力成为治疗皮肤疾病的新型抗真菌药物。解淀粉芽孢杆菌Q-426菌株能够产生环脂肽fengycins和iturin家族的bacillomycin D,但该菌株发酵液具有溶血活性。为确定bacillomycin D是否为引发溶血作用的主要物质,本文利用同源重组基因敲除技术,构建解淀粉芽孢杆菌bmy基因缺失菌株,抑制bacillomycin D的合成,研究对其溶血性及抗菌活性的影响。突变菌株发酵液中未检测到bacillomycin D产生,且发酵液的溶血性及抗菌活性明显减小,表明bacillomycin D与该菌的溶血活性及抑菌活性密切相关。     

芽孢杆菌几种重要抗菌脂肽研究进展

多种芽孢杆菌为益生菌,能分泌多种天然抗菌活性物质,其中脂肽是重要的一类。目前已鉴定的脂肽约有90多种,多数为环脂肽。脂肽中表面活性素(surfactin)、伊枯草菌素(iturin)、芬原素(fengycin)、杆菌霉素(bacillomycin)、多粘菌素(polymyxins)等是研究最广泛的脂肽。其中surfactin、iturin、fengycin由于其具有表面活性剂特性及抗真菌、抗细菌、抗病毒、抗肿瘤、抗炎症等功能,应用潜力巨大。本文对surfactin、iturin及fengycin的结构、功能、合成调控及其分离纯化和生产等方面的研究进展进行了评述。合成生物学是提高脂肽产量的重要手段,未来脂肽可用于种植业、养殖业、食品、医药、石油工业和环保等领域,因此需要在新型脂肽的发现、高产活性脂肽的生产、脂肽低廉生产技术的研发及安全性的评估等方面加强研究。     

生防绿针假单胞菌HT66中脂肽的鉴定与功能

【目的】脂肽(Lipopeptide,LP)是微生物合成的一类重要的生物表面活性剂,不仅影响细菌的生物学功能,还对多种植物和人类病原菌具有广谱的拮抗作用。然而至今未见绿针假单胞菌(Pseudomonas chlororaphis)中脂肽产物的报道。【方法】通过生物信息学手段预测绿针假单胞菌HT66中脂肽的氨基酸组成及顺序,构建脂肽合成基因缺失突变株HT66Δclp,根据突变株缺失代谢产物的UPLC/QTOF-MS信息验证预测结果,并研究了脂肽对该菌株的生长、吩嗪-1-甲酰胺(PCN)合成、生物膜形成和群集运动性的影响。【结果】预测菌株HT66的脂肽氨基酸顺序为L-Leu–D-Glu–D-allo-Thr–D-Val–L-Leu–D-Ser–L-Leu–D-Ser–L-Ile,通过比对野生型和突变株代谢产物的质谱信息确定该产物为黏液菌素(Viscosin);脂肽合成基因缺失后,菌株HT66的生长无明显变化,但其PCN合成、生物膜形成和群集运动性均有不同程度地下降。【结论】菌株HT66的脂肽产物为黏液菌素,对菌株的代谢、生物膜形成和运动性等生物学功能具有重要的调控作用。研究报道了绿针假单胞菌中一种脂肽分子的结构与功能,为研究其合成和调控机制及开发和应用奠定了基础。     

原生质体融合选育高产脂肽LI-F多粘类芽胞杆菌及融合菌株表达差异分析

本研究以多粘类芽胞杆菌JSa-9前期诱变获得的两株带有营养缺陷型标记的菌株N1-37(Phe–)和N2-27(His–)作为亲本菌株,采用聚乙二醇作为促融剂,进行原生质体融合,筛选出高产LI-F类抗菌脂肽的融合菌株。通过HPLC对融合菌株和原始菌株产LI-F类抗菌脂肽进行定量检测,并利用实时荧光定量PCR对菌株JSa-9和融合菌株中LI-F类抗菌脂肽合成酶的关键基因fus A1、fus A2、fus C1和fus C2的差异性表达进行分析。结果表明,经过原生质融合获得一株LI-F类抗菌脂肽高产菌株F5-15。菌株F5-15的LI-F类抗菌脂肽产量为原始菌株产量的3.1倍,LI-F类抗菌脂肽合成酶的4个关键基因在融合菌株F5-15中的表达量分别是其在原始菌株JSa-9中的10.48、2.48、2.1和11.8倍。     

金黄色葡萄球菌拮抗菌株的筛选鉴定及其抗菌物质分析

【背景】植物内生菌的次生代谢产物是新型天然活性物质的重要来源。【目的】从芍药内生细菌中筛选对金黄色葡萄球菌有抑菌活性的菌株和次生代谢产物。【方法】采用平板对峙法筛选拮抗菌株,根据形态学特征和分子生物学的方法鉴定菌株,PCR扩增检测合成脂肽类物质的功能基因;运用牛津杯法依次测定内生细菌发酵液和脂肽类粗提物的抑菌活性,利用Sephadex LH-20凝胶层析分离脂肽类物质,利用基质辅助激光解吸电离飞行时间质谱分析具有抑菌作用的分离组分。【结果】共筛选出13株对金黄色葡萄球菌具有不同程度抑制作用的内生菌株,其中菌株SY11的抑菌作用最为显著,其发酵液和脂肽类粗提物均具有较强的抑制作用。结合形态学鉴定以及16S r RNA基因序列分析,鉴定其为解淀粉芽孢杆菌(Bacillusamyloliquefaciens)。PCR扩增检测表明菌株SY11含有3个合成脂肽类物质的功能基因fenA、ituD和srfkn,推测该菌株可能具有合成脂肽类物质的能力。根据具有抑菌活性分离组分的质谱分析结果,推测其有效物质的主要成分为Bacillomycin D。【结论】解淀粉芽孢杆菌SY11对金黄色葡萄球菌有良好抑制效果,其脂肽类粗提物也具有较强的体外抑菌活性。本研究为芍药内生细菌的开发应用奠定了基础。     

牡丹根部内生细菌的分离鉴定及脂肽类物质的拮抗活性研究

【目的】从牡丹(Paeonia suffruticosa Andr.)根部组织中分离鉴定内生细菌,测定拮抗菌株脂肽类活性物质的体外抑菌活性。【方法】采用平板对峙法筛选出对牡丹灰霉病菌(Botrytis paeoniae Oadem)、牡丹炭疽病菌(Gloeosporium sp.)、牡丹黑斑病菌(Altenaria sp.)、牡丹黄斑病菌(Phyllosticta commonsii)有拮抗作用的内生细菌。基于形态特征、生理生化特性和16S rRNA基因序列同源性鉴定拮抗菌株。根据脂肽类抗菌物质合成相关基因序列对拮抗菌株进行基因扩增检测,采用酸沉淀法提取拮抗菌株的脂肽类物质,平板对峙法测定脂肽类物质的体外抑菌活性。【结果】从牡丹根部组织中共分离获得62株内生细菌,其中菌株Md31和Md33对4种病原菌均有较明显的抑制作用。Md31和Md33被鉴定为解淀粉芽孢杆菌(Bacillus amyloliquefaciens)。通过对菌株Md31和Md33进行5个脂肽类合成功能基因bmyB、fenD、ituC、srfAA和srfAB的检测,序列同源性分析,表明两个菌株具有合成脂肽类物质的能力。菌株Md31和Md33的脂肽类粗提物对所测试的牡丹病原真菌均具有不同程度的抑制作用。【结论】获得了2株对牡丹病原菌有良好抑制效果的解淀粉芽孢杆菌Md31和Md33,两个菌株的脂肽类粗提物也具有较强的体外抑菌活性,该研究为牡丹内生细菌的进一步开发应用奠定了基础。     

地衣芽胞杆菌FJAT-4脂肽结构鉴定及其对尖孢镰刀菌的抑制作用

【目的】地衣芽胞杆菌FJAT-4产生的脂肽能够有效抑制尖孢镰刀菌的生长,本研究的目的在于探究地衣芽胞杆菌FJAT-4脂肽结构,分析培养基组分和培养温度对FJAT-4产抑菌脂肽的影响,阐述脂肽对尖孢镰刀菌的抑制作用,为菌株抑菌机理的阐释及其在枯萎病防治中的推广应用奠定基础。【方法】通过酸沉醇提法提取地衣芽胞杆菌FJAT-4产生的脂肽;利用液相色谱串联四极杆飞行时间质谱进行地衣芽胞杆菌FJAT-4脂肽组成分析及结构鉴定;以抑菌圈大小为指标评估地衣芽胞杆菌FJAT-4脂肽对尖孢镰刀菌的抑制效果;通过扫描电镜观察地衣芽胞杆菌FJAT-4粗脂肽对尖孢镰刀菌的抑制作用。【结果】地衣芽胞杆菌FJAT-4产生的抑菌脂肽由C_(17)fengycin A、C_(17)fengycin B、C_(17)fengycin B_2、C_(16)fengycin A衍生物、C_(16)fengycin B衍生物、C_(13)–C_(15)surfactin及C_(13)–C_(15)surfactin衍生物组成,其中C_(13)–C_(15) surfactin衍生物(m/z[M+Na]~+=1048.6/1062.6/1076.6)为新化合物。培养基成分不同对菌株FJAT-4脂肽组成影响较小,但温度对菌株FJAT-4产生抑菌脂肽的影响很大,该菌株在较低温度(20–25°C)下培养不产生脂肽,30–40°C下培养能产生抑菌脂肽,且高温有利于提高脂肽中surfactin的比例。该脂肽类物质对辣椒、番茄、香蕉和甜瓜尖孢镰刀菌等多种植物病原真菌均具有很好的抑制效果,且呈剂量依赖性。扫描电镜结果表明地衣芽胞杆菌FJAT-4所产的脂肽会严重影响辣椒、番茄、香蕉和甜瓜尖孢镰刀菌菌丝的正常生长,导致菌丝断裂变形、孢子变形或显著抑制了孢子的生长。【结论】地衣芽胞杆菌FJAT-4产生的抑菌脂肽为fengycin和surfactin类物质,该抑菌脂肽会致使尖孢镰刀菌菌丝体发育畸形,影响尖孢镰刀菌的正常生长。     

脂肽-糖脂混合生物表面活性剂产生菌筛选和优化培养

结合脂肽和糖脂的性能优势,致力于产脂肽-鼠李糖脂混合型生物表面活性剂的新菌株选育和培养条件优化。采用血平板溶血圈法初筛菌株、改进排油圈法快速检测产量以及飞行时间质谱鉴定产物结构。对优选菌株的碳源、氮源和磷酸盐缓冲液、重要金属离子浓度等进行了单因子和正交试验,优化了培养基和培养条件。采用高压液相色谱和蒽酮比色法定量分析了产物组成。筛选获得了同时积累糖脂和脂肽的新菌株,鉴定命名为芽胞杆菌Bacillus subtilis THY-7。摇瓶分批培养48 h,细胞OD600为37.0,产物浓度2.4 g/L,分别是优化前的3.4倍和3.1倍。发酵罐补料分批培养,泡沫中产物浓度达到4.5 g/L,且74％为表面活性素,22％为鼠李糖脂。B. subtilis THY-7是具有脂肽-鼠李糖脂高产潜力的优选菌株。     

微生物源脂肽的生物合成和分子调控

微生物源脂肽具有抑制真菌和细菌的生长、抗病毒和抗肿瘤等多种生物活性,在农业生物防治、临床医疗、环境治理等多种领域具有巨大的应用潜力。然而,低产量一直是影响其推广应用的瓶颈。深入了解脂肽合成的关键因素和调控策略对于提高其产量和纯度至关重要。本文概括了3大家族脂肽surfactin、fengycin和iturin的结构、功能及应用前景,介绍了NRPS和NRPS-PKS两种合成系统的结构域和功能,阐释了脂肽生物合成过程中侧链脂肪酸的合成、脂肪酸的活化及与氨基酸的连接、肽链的延伸和环化三个阶段的模块组装和酶催化活动,以及三大家族脂肽合成操纵子开放阅读框的组成;总结了导入或缺失关键基因、定点突变、模块替换、强启动子替换、修饰前体路径等多种遗传操作对脂肽产量的影响,以及群体感应肽信息素、sigma因子等全局调控因子对脂肽合成基因表达的调节。指出利用多组学联用深入探讨脂肽合成的全局分子调控机制和加强结构域蛋白互作和分子动力学研究是提高脂肽产量和纯度以及创造新脂肽的理论基础,提出了利用基因组装和编辑等合成生物学方法及代谢工程技术提高脂肽产量和挖掘新型脂肽靶向性的可能途径,为推进脂肽的生产和应用进程提供科学参考。     

黑水虻肠道细菌抗菌筛选及其活性物质分子鉴定

【目的】从昆虫黑水虻分离的肠道细菌进行抗植物病原菌的拮抗菌筛选,对获得有拮抗活性的肠道细菌进行活性物质的分子鉴定。【方法】用稀释涂布法从水虻肠道中分离菌株,采用平板对峙法进行抗菌筛选,对有抗菌活性的菌株通过生理生化实验、16S rRNA鉴定和进化树分析确定其种属。参考已知脂肽合成关键基因设计引物,以拮抗菌总DNA为模板进行PCR扩增,对目的片段进行测序。【结果】通过抗菌筛选获得一株对水稻黄单胞菌以及小麦纹枯病病原菌等有很强抑制效果的水虻肠道细菌BSF-CL,经鉴定为枯草芽胞杆菌。脂肽合成关键基因PCR结果显示BSF-CL菌株具有脂肽Iturin和Surfactin合成的关键基因。推测BSF-CL很可能合成脂肽Iturin和Surfactin。【结论】从水虻肠道中分离出对水稻黄单胞菌有很强抑菌活性的菌株,分离菌被鉴定为一种枯草芽胞杆菌,通过活性物质的分子克隆鉴定初步推测其活性物质可能为脂肽Iturin和Surfactin。     

DKPs对解淀粉芽孢杆菌Q-426抗菌活性物质基因表达量的影响

目的:解淀粉芽孢杆菌Q-426在其生长过程中能够产生芬枯草菌素、依枯草菌素、枯草杆菌素等多种脂肽类抗菌物质。利用实时荧光定量PCR的方法考察细菌群体感应信号分子二酮哌嗪类化合物(diketopiperazines, DKPs)对脂肽类抗菌物质合成的调控作用。方法:当Q-426菌进入对数生长期中期,向发酵液中加入终浓度为5 mg/L的DKPs,并继续培养至48 h,并利用实时荧光定量PCR的方法进行抗菌物质mRNA表达水平的定量分析。结果:二酮哌嗪类化合物能够抑制抗菌活性物质相关基因的表达。     

Effects of critical medium components on the production of antifungal lipopeptides from Bacillus amyloliquefaciens Q-426 exhibiting excellent biosurfactant properties

In this study, influence of three critical parameters nitrogen sources, initial pH and metal ions was discussed in the production of antifungal lipopeptides from Bacillus amyloliquefaciens Q-426. The results revealed that lipopeptide biosynthesis might have relations with the population density of strain Q-426 and some special amino acids. Also, the alkali-resistant strain Q-426 could grow well in the presence of Fe²⁺ ions below 0.8 M l^?1 and still maintain the competitive advantage below 0.2 M l^?1. Moreover, lipopeptides exhibited significant inhibitory activities against Curvularia lunata (Walk) Boed even at the extreme conditions of temperature, pH and salinity. Finally, biosurfactant properties of lipopeptides mixture were evaluated by use with totally six different methods including bacterial adhesion to hydrocarbons assay, lipase activity, hemolytic activity, emulsification activity, oil displacement test and surface tension measurement. The research suggested that B. amyloliquefaciens Q-426 may have great potential in agricultural and environmental fields.     

Nonribosomal Peptide Synthase Gene Clusters for Lipopeptide Biosynthesis in Bacillus subtilis 916 and Their Phenotypic Functions

Bacillus cyclic lipopeptides (LPs) have been well studied for their phytopathogen-antagonistic activities. Recently, research has shown that these LPs also contribute to the phenotypic features of Bacillus strains, such as hemolytic activity, swarming motility, biofilm formation, and colony morphology. Bacillus subtilis 916 not only coproduces the three families of well-known LPs, i.e., surfactins, bacillomycin Ls (iturin family), and fengycins, but also produces a new family of LP called locillomycins. The genome of B. subtilis 916 contains four nonribosomal peptide synthase (NRPS) gene clusters, srf, bmy, fen, and loc, which are responsible for the biosynthesis of surfactins, bacillomycin Ls, fengycins, and locillomycins, respectively. By studying B. subtilis 916 mutants lacking production of one, two, or three LPs, we attempted to unveil the connections between LPs and phenotypic features. We demonstrated that bacillomycin Ls and fengycins contribute mainly to antifungal activity. Although surfactins have weak antifungal activity in vitro, the strain mutated in srfAA had significantly decreased antifungal activity. This may be due to the impaired productions of fengycins and bacillomycin Ls. We also found that the disruption of any LP gene cluster other than fen resulted in a change in colony morphology. While surfactins and bacillomycin Ls play very important roles in hemolytic activity, swarming motility, and biofilm formation, the fengycins and locillomycins had little influence on these phenotypic features. In conclusion, B. subtilis 916 coproduces four families of LPs which contribute to the phenotypic features of B. subtilis 916 in an intricate way.     

Molecular and biochemical detection of fengycin- and bacillomycin D-producing Bacillus spp., antagonistic to fungal pathogens of canola and wheat

Bacillus species are well known for their ability to control plant diseases through various mechanisms, including the production of secondary metabolites. Bacillus subtilis DFH08, an antagonist of Fusarium graminearum, and other Bacillus spp. that are antagonists of common fungal pathogens of canola were screened for peptide synthetase biosynthetic genes of fengycin and bacillomycin D. Specific polymerase chain reaction (PCR) primers identified B. subtilis strains DFH08 and 49 for the presence of the fenD gene of the fengycin operon. Bacillus cereus DFE4, Bacillus amyloliquefaciens strains DFE16 and BS6, and B. subtilis 49 were identified for the presence of the bamC gene of the bacillomycin D synthetase biosynthetic operon. Both fengycin and bacillomycin D were detected in the culture extract of strain Bs49, characterized through MALDI-TOF-MS (matrix-assisted laser desorption ionization - time of flight - mass spectrometry), and their antifungal activities demonstrated against F. graminearum and Sclerotinia sclerotiorum. This study designed and used specific PCR primers for the detection of potential fengycin- and bacillomycin D-producing bacterial antagonists and confirmed the molecular detection with the biochemical detection of the corresponding antibiotic produced. This is also the first report of a B. cereus strain (DFE4) to have bacillomycin D biosynthetic genes. Bacteria that synthesize these lipopeptides could act as natural genetic sources for genetic engineering of the peptide synthetases for production of novel peptides.     

Bacillomycin D: an iturin with antifungal activity against Aspergillus flavus

AIMS: In a search for an antifungal peptide with a high activity against Aspergillus flavus, Bacillus subtilis AU195 was selected from a collection of isolates with antagonistic activity against A. flavus. METHODS AND RESULTS: To identify the antifungal peptides, a protein purification scheme was developed based on the detection of the antifungal activity in purified fractions against A. flavus. Two lipopeptides were purified with anion exchange and gel filtration chromatography. Their masses were determined to be 1045 and 1059 m/z with mass spectrometry, and their peptide moiety was identical to bacillomycin D. CONCLUSION: AU195 synthesized a mixture of two antifungal bacillomycin D analogues with masses of 1045 and 1059, the 14 mass unit difference representing the difference between a C15 and a C16 lipid chain. SIGNIFICANCE AND IMPACT OF THE STUDY: Both bacillomycin D analogues were active at the same concentration against A. flavus, but the different lipid chain length apparently affected the activity of the lipopeptide against other fungi.     

The iturin and fengycin families of lipopeptides are key factors in antagonism of Bacillus subtilis toward Podosphaera fusca

Podosphaera fusca is the main causal agent of cucurbit powdery mildew in Spain. Four Bacillus subtilis strains, UMAF6614, UMAF6619, UMAF6639, and UMAF8561, with proven ability to suppress the disease on melon in detached leaf and seedling assays, were subjected to further analyses to elucidate the mode of action involved in their biocontrol performance. Cell-free supernatants showed antifungal activities very close to those previously reported for vegetative cells. Identification of three lipopeptide antibiotics, surfactin, fengycin, and iturin A or bacillomycin, in butanolic extracts from cell-free culture filtrates of these B. subtilis strains pointed out that antibiosis could be a major factor involved in their biocontrol ability. The strong inhibitory effect of purified lipopeptide fractions corresponding to bacillomycin, fengycin, and iturin A on P. fusca conidia germination, as well as the in situ detection of these lipopeptides in bacterial-treated melon leaves, provided interesting evidence of their putative involvement in the antagonistic activity. Those results were definitively supported by site-directed mutagenesis analysis, targeted to suppress the biosynthesis of the different lipopeptides. Taken together, our data have allowed us to conclude that the iturin and fengycin families of lipopeptides have a major role in the antagonism of B. subtilis toward P. fusca.     

Cyclic lipopeptide profile of the plant-beneficial endophytic bacterium Bacillus subtilis HC8

In a previous study (Malfanova et al. in Microbial Biotech 4:523–532, 2011), we described the isolation and partial characterization of the biocontrol endophytic bacterium B. subtilis HC8. Using thin-layer chromatography, we have detected several bioactive antifungal compounds in the methanolic extract from the acid-precipitated supernatant of HC8. In the present study, we have further analyzed this methanolic extract using liquid chromatography-mass spectrometry. Based on the comparison of retention times and molecular masses with those of known antifungal compounds, we identified three families of lipopeptide antibiotics. These include four iturins A having fatty acyl chain lengths of C14 to C17, eight fengycins A (from C14 to C18 and from C15 to C17 containing a double bond in the acyl chain), four fengycins B (C15 to C18), and five surfactins (C12 to C16). Evaluation of the antifungal activity of the isolated lipopeptides showed that fengycins are the most active ones. To our knowledge, this is the first report of an endophytic Bacillus subtilis producing all three major families of lipopeptide antibiotics containing a very heterogeneous mixture of homologues. The questions remain open which of these lipopeptides (1) are being produced during interaction with the plant and (2) are contributing to the biocontrol activity of HC8.     

Mass spectrometry identification of antifungal lipopeptides from Bacillus sp. BCLRB2 against Rhizoctonia solani and Sclerotinia sclerotiorum

This work aims to characterize the bioactive molecules produced by an antagonistic Bacillus sp. strain BCLRB2 isolated from healthy leaves of olive tree against Rhizoctonia solani and Sclerotinia sclerotiorum. The bacterial strain isolated showed a high and persistent antifungal activity against the two pathogens. The free-cell supernatant showed also a high antifungal activity against R. solani and at a lower extent against S. sclerotiorum. The partial purification of the antifungal substances with methanol gradient applied to C18 column binding the Bacillus BCLRB2 culture supernatant showed that the 20% and 60% methanol fractions had a high and specific activity against S. sclerotiorum and R. solani, respectively. The mass spectrometry identification of the compounds in the fraction specifically active against S. sclerotiorum revealed the presence of bacillomycin D C16 as a major lipopeptide. The fraction specifically active against R. solani contained bacillomycin D C15 and 2 unknown lipopeptides. The 80% methanol fraction had a moderate and a broad spectrum activity against the two pathogens and consisted from two iturin D (C13 and C14) as a major lipopeptides.     

Identification and natural functions of cyclic lipopeptides from Bacillus amyloliquefaciens An6

Lipopeptides constitute a structurally diverse group of metabolites produced by various bacterial and fungal genera. In the past decades, research on lipopeptides has been fueled by their surfactant activities. However, natural functions of lipopeptides compounds have received considerably less attention. The aim of this study was to isolate and identify the lipopeptides from Bacillus amyloliquefaciens An6, and further evaluate their biological activities. An6 lipopeptides were detected by PCR using degenerated primers and MALDI‐TOF‐MS. An6 strain was found to produce surfactin, fengycin, and bacillomycin. Following their purification, the in vitro antioxidant activity of An6 lipopeptides was studied through different assays. The scavenging effect on 1,1‐diphenyl‐2‐picrylhydrazyl radicals at a dosage of 0.75 mg/mL was 81%. Its reducing power was concentration‐dependant and reached a maximum of 1.07 at 2.5 mg/mL. Moreover, they showed a strong inhibition of β‐carotene bleaching. An6 lipopeptides mixture was also found to display significant antimicrobial activity against several Gram‐positive, Gram‐negative bacteria, and fungal strains. An6 lipopeptides were insensitive to proteolytic enzymes, stable between pH 4.0 and 12.0, and resistant to high temperature. Our results provided enough evidence proving that An6 lipopeptides could be used as functional‐food components.