Evaluating the Phylogenetic Position of Chinese Tree Shrew （Tupaia belangeri chinensis） Based on Complete Mitochondrial Genome： Implication for Using Tree Shrew as an Alternative Experimental Animal to Primates in Biomedical Research

Tree shrew(Tupaia belangeri) is currently placed in Order Scandentia and has a wide distribution in Southeast Asia and Southwest China.Due to its unique characteristics,such as small body size,high brain-to-body mass ratio,short reproductive cycle and life span,and low-cost of maintenance,tree shrew has been proposed to be an alternative experimental animal to primates in biomedical research.However,there are some debates regarding the exact phylogenetic affinity of tree shrew to primates.In this study,we determined the mtDNA entire genomes of three Chinese tree shrews(T.belangeri chinensis) and one Malayan flying lemur(Galeopterus variegatus).Combined with the published data for species in Euarchonta,we intended to discern the phylogenetic relationship among representative species of Dermoptera,Scandentia and Primates.The mtDNA genomes of Chinese tree shrews and Malayan flying lemur shared similar gene organization and structure with those of other mammals.Phylogenetic analysis based on 12 concatenated mitochondrial proteinencoding genes revealed a closer relationship between species of Scandentia and Glires,whereas species of Dermoptera were clustered with Primates.This pattern was consistent with previously reported phylogeny based on mtDNA data,but differed from the one reconstructed on the basis of nuclear genes.Our result suggested that the matrilineal affinity of tree shrew to primates may not be as close as we had thought.The ongoing project for sequencing the entire genome of Chinese tree shrew will provide more information to clarify this important issue.     

树鼩肝炎动物模型的研究进展

肝炎的的大范围流行已成为国内外关注的重要公共卫生问题之一。甲肝、乙肝虽已有疫苗,但不能忽视未来由于病毒变异所带来的威胁。丙肝目前尚未发现非常有效的疫苗,且丙肝的病理学机制也尚未完全清晰,主要原因是缺乏理想的动物模型。树胸属于低等灵长类动物。研究发现,他对很多人类疾病易感,所以建立肝炎树胸动物模型成为现在肝炎研究的一个热点。本文介绍了各型肝炎主要是甲、乙、丙型肝炎研究中建立树胸动物模型的自内外进展情况及存在的问题。     

Evolutionary changes in Primate sensory capacities

This paper is a review of laboratory research on sensory capacities in Primates with emphasis on evolutionary changes in the capacities. Man, great apes and Old World monkeys have virtually identical color vision, a result consistent with the generalization that these relatively diverse species have reached a plateau in the evolution of color vision, Capuchin and squirrel monkeys are protonomalous trichromats thus suggesting a widespread relative insensitivity to red among New World monkeys. Of the prosimians, only tree shrews have been extensively tested for color vision capability and they are deuteranopic dichromats.There is clear evidence of a decline in the upper audible frequencies and the most audible frequencies during Primate evolution. Although the olfactory portion of the brain has declined markedly in relative size during Primate evolution, there is no corresponding research showing difference in olfactory sensitivity across the living Primate genera. Existing research on gustatory sensitivity in Primates is too limited to permit any evolutionary conclusions.     

树鼩高重复顺序TSr(Bgl-Ⅱ)-1的核苷酸顺序分析及与灵长类α-顺序的比较

为了确知树鼩高重复顺序与灵长类动物的类α顺序有无相似处,我们再次把TSr(BglⅡ)-1片段克隆在质粒pWR33上,用“双链引物测序法”测得全部核苷酸顺序为353bp。并将此顺序与灵长类动物的类α顺序进行比较,发现其中有三个对应位置上与类α顺序的“冷点”保守区序列相似,其中还有一个有碱基变异的EcoRⅠ酶切点和四个潜在的HindⅢ酶切点,另外有两个与“凉点”区一致的小顺序,对这些相似性进行了讨论。     

Epiphyseal union,tooth eruption,and sexual maturation in the common tree shrew,with reference to its systematic problem

The epiphyseal union, eruptive sequence of the permanent teeth, and sexual maturity are examined in 150 common tree shrews (Tupaia glis), and are compared with those in other mammals including primates. The sequence of epiphyseal union is: elbow-hip-ankle-wrist-knee-shoulder. The sequence of epiphyseal union in mammals is not so fixed as has been previously considered. The eruptive sequence of the permanent teeth in the common tree shrew is more similar to that of insectivores than primates. The gonads are examined histologically to determine the sexual maturation. The order of completion of these three developmental aspects is also investigated and is compared with those in other mammals. Although the tree shrews have many similarities with platyrrhines in the development of the eco-sensitive organs such as the epiphyses of the extremities, their inclusion in the order Primates is still doubtful.     

自发性树鼩乳腺肿瘤的特性(英文)

乳腺癌是严重危害女性健康的常见恶性肿瘤,建立合适的乳腺癌动物模型对于研究人类乳腺癌的生物学机制及发展新的防治方法至关重要。相对于常用的啮齿类动物,树鼩(Tupaia belangeri chinensis,tree shrew)因在进化层次上更接近于人类而可用于建立更适合的乳腺癌模型。该文详细了介绍一例树鼩自发性乳头状良性乳腺肿瘤。免疫组化结果显示该例肿瘤孕激素受体阳性且Ki-67阳性细胞比例显著增加;而活化的Caspase3阳性细胞比例较低;且肿瘤的形态和病理与人导管内乳头状肿瘤非常接近。提示利用树鼩建立乳腺肿瘤模型的可行性。     

The head and neck muscles of the Philippine colugo (Dermoptera: Cynocephalus volans), with a comparison to tree‐shrews,primates, and other mammals

The colugos, or flying lemurs (Dermoptera), are arboreal gliding mammals that are commonly grouped with tree‐shrews (Scandentia) and Primates in the superorder Euarchonta. However, little is known about the head and neck muscles of these gliding mammals. This raises difficulties for the discussion of not only the functional morphology and evolution of colugos, but also the origin, evolution, functional morphology, and phylogenetic relationships of the Euarchonta as a whole, and thus also of our own clade, the Primates. In this work, I describe the head and neck muscles of the colugo Cynocephalus volans, and compare these muscles with those of other mammals, either dissected by me or described in the literature. My observations and comparisons indicate that, with respect to the number of muscles, the plesiomorphic condition for euarchontans as well as for primates is more similar to that found in extant tree‐shrews than in extant colugos. This is because various muscles that were probably plesiomorphically present in the euarchontan and primate clades, as, e.g., the stylohyoideus, mandibulo‐auricularis, cleido‐occipitalis, omohyoideus, and sternohyoideus, are not present as independent elements in extant colugos. These observations and comparisons also indicate that various laryngeal and facial muscles that are present in modern humans were absent in the last common ancestor of extant primates. J. Morphol., 2009. © 2008 Wiley‐Liss, Inc.     

树鼩肝细胞体外分离培养体系的复建及主要影响因素分析

树鼩（Tupaia Belangeri）与人和灵长类亲缘关系较为接近,是乙型肝炎研究中备受关注的小动物模型,而其原代肝细胞的分离和培养则是建立HBV体外感染模型及应用和基础研究的关键的第一步,但由于以往的文献报道均较为简要,需要较长时间的摸索。本研究通过与机械分离法的直接比较,验证了两步灌注法在树鼩肝细胞分离中的优越性。进而发现,在分离后的体外培养过程中,二甲基亚砜不仅能够促进和维持原代肝细胞的分化,而且能够显著地抑制纤维状细胞群的出现。同时,肝细胞生长因子（HGF）和表皮生长因子（EGF）能够促进肝细胞在体外长期存活。在此优化的条件下,原代培养可持续4—5周,并且较多的细胞聚集形成类似肝窦结构的形态,从而为乙型肝炎病毒感染机理研究和药物筛选提供了必备的先决条件,也为丙型肝炎病毒和丁型肝炎病毒及单纯疱疹病毒等研究和药物筛选提供了可能。     

Characterization of tree shrew telomeres and telomerase

The use of tree shrews as experimental animals for biomedical research is a new practice. Several recent studies suggest that tree shrews are suitable for studying cancers, including breast cancer, glioblastoma,lung cancer, and hepatocellular carcinoma. However, the telomeres and the telomerase of tree shrews have not been studied to date. Here, we characterize telomeres and telomerase in tree shrews. The telomere length of tree shrews is approximately 23 kb, which is longer than that of primates and shorter than that of mice, and it is extended in breast tumor tissues according to Southern blot and flow-fluorescence in situ hybridization(FISH) analyses. Tree shrew spleen, bone marrow, testis, ovary, and uterus show high telomerase activities, which are increased in breast tumor tissues by telomeric repeat amplification protocol assays. The telomere length becomes shorter, and telomerase activity decreases with age. The tree shrew TERT and TERC are more highly similar to primates than to rodents. These findings lay a solid foundation for using tree shrews to study aging and cancers.     

Tarsals of the extinct insectivoran family Nyctitheriidae (Mammalia): evidence for archontan relationships

Astragali and calcanea from the English late Eocene, attributed to the extinct 'insectivoran' family Nyctitheriidae, are described for the first time. They contrast with those of the strict sense insectivorans, the Lipotyphla, in which order nyctitheres have usually been placed, and compare more closely with those of Scandentia (tree shrews) and the extinct Plesiadapiformes. Functional analysis demonstrates that inversion of the foot was possible between the astragalus and calcaneum of nyctitheres, allowing them to be interpreted as having had a tree-dwelling, probably scansorial, mode of life. These tarsal bones are compared with those of other placental mammals. Cladistic analysis of tarsal characters places nyctitheres as sister group to the Plesiadapiformes within the superorder Archonta, excluding Chiroptera (bats). An independent analysis of dental characters places them as sister group to the rest of the Archonta, but still excluding bats. Combining the dental and tarsal characters places nyctitheres as sister group to Plesiadapiformes and all modern groups of archontans except bats. A new osteological synapomorphy is proposed for the Archonta, which is thus considered to comprise Chiroptera, Deccanolestes , Nyctitheriidae, Plesiadapiformes, Dermoptera (including Mixodectidae), Scandentia and Primates. Insectivorans s.l . have long been at the centre of arguments on placental origins, although lipotyphlans are usually regarded as a monophyletic group, rather than paraphyletic stem placentals. Reidentification of an extinct lipotyphlan family as having archontan relationships raises the possibility of advances in other areas of insectivoran phylogeny when more postcranial elements become known. The early Oligocene extinction of nyctitheres may be causally related to the rise of insectivorous microchiropteran bats, which, because of their flying ability, would have been able to forage more widely.     

树鼩的动物福利措施探讨

树鼩在生物学特性、生理生化、新陈代谢和基因组等方面近似于人类,被广泛应用于生理学、病理学、病毒学、免疫学、药理学及遗传学等多个领域。迄今为止用于生物医学研究的树鼩大部分来自野生,实验树鼩尚无国家质量控制标准。为了保证树鼩引种、驯化、饲养、繁殖、质量控制及福利的规范化和科学化,提高树鼩繁殖率和成活率,本文从兽医公共卫生及实验动物科学的角度,对野生树鼩的捕捉、运输、检疫、饲养及繁育等方面的基本原则及技术操作和福利要求作一简述,为从事树鼩工作的有关人员及树鼩实验动物化研究提供参考。     

Protection of tree shrews by pVAX-PS DNA vaccine against HBV infection

The immunological protection of pVAX-PS, a DNA vaccine, was assessed in the tree shrews model. pVAX-PS was constructed by inserting the gene encoding the middle (pre-S2 plus S) envelope protein of HBV into a plasmid vector pVAX1. Tree shrews (Tupaia belangeri chinenesis) were experimentally infected with human HBV by inoculation with human serum positive for HBV markers. DNA vaccination-induced seroconversion and antibody to HBV surface antigen (anti-HBs) were analyzed by ELISA, and protective effects elicited by pVAX-PS vaccination against subsequent HBV challenge were evaluated by detection of HBV seromarkers and observation of hepatic lesions in HBV-infected tree shrews. The results shown that anti-HBs were detectable in serum at week 2 after pVAX-PS vaccination and peaked at week 4, and immunization with pVAX-PS decreased the positive conversion rate of HBV seromarkers and relieved hepatic lesions in tree shrews challenged with HBV. These results indicated that pVAX-PS immunization could induce remarkable humoral immune response and prevent the experimental tree shrews from infection of HBV.     

Molecular phylogenetic evidence confirming the Eulipotyphla concept and in support of hedgehogs as the sister group to shrews

For more than a century, living insectivore-like mammals have been viewed as little removed from the ancestral mammalian stock based on their retention of numerous primitive characteristics. This circumstance has made "insectivores" a group of special interest in the study of mammalian evolution. included hedgehogs, moles, shrews, solenodons, golden moles, tenrecs, flying lemurs, tree shrews, and elephant shrews in Insectivora. Subsequently, morphologists excluded flying lemurs, tree shrews, and elephant shrews from Insectivora and placed these taxa in the orders Dermoptera, Scandentia, and Macroscelidea, respectively. The remaining insectivores constitute Lipotyphla, which is monophyletic based on morphology. In contrast, molecular data suggest that lipotyphlans are polyphyletic, with golden moles and tenrecs placed in their own order (Afrosoricida) in the superordinal group Afrotheria. Studies based on nuclear genes support the monophyly of the remaining lipotyphlans (=Eulipotyphla) whereas mitochondrial genome studies dissociate hedgehogs from moles and place the former as the first offshoot on the placental tree. One shortcoming of previous molecular studies investigating lipotyphlan relationships is limited taxonomic sampling. Here, we evaluate lipotyphlan relationships using the largest and taxonomically most diverse data set yet assembled for Lipotyphla. Our results provide convincing support for both lipotyphlan diphyly and the monophyly of Eulipotyphla. More surprisingly, we find strong evidence for a sister-group relationship between shrews and hedgehogs to the exclusion of moles.     

The Postcranial Morphology of Ptilocercus lowii (Scandentia, Tupaiidae): An Analysis of Primatomorphan and Volitantian Characters

The eutherian orders Scandentia, Primates, Dermoptera, and Chiroptera have been grouped together by many morphologists, using various methods and data sets, into the cohort Archonta. Molecular evidence, however, has supported a clade (called Euarchonta) that includes Scandentia, Primates, and Dermoptera, but not Chiroptera. Within Archonta, some systematists have grouped Dermoptera and Chiroptera in Volitantia, while others have grouped Dermoptera and Primates in Primatomorpha. The order Scandentia includes the single family Tupaiidae, with two subfamilies, Ptilocercinae and Tupaiinae. Ptilocercinae is represented only by Ptilocercus lowii, which has been said to be the taxon most closely approximating the ancestral tupaiid. However, most researchers working on archontan phylogeny typically do not treat the order Scandentia as being polymorphic. They usually use Tupaia to represent Scandentia, despite the fact that Ptilocercus is quite distinct from Tupaia and has been argued to be the more plesiomorphic of the two taxa. In this study, a character analysis was performed on postcranial features that have been used to support the competing Primatomorpha and Volitantia hypotheses. In recognition of the polymorphic nature of Scandentia, taxonomic sampling within Scandentia was increased to include Ptilocercus. The postcranium of Ptilocercus was compared to that of tupaiines, euprimates, plesiadapiforms, dermopterans, and chiropterans. Several character states used to support either Primatomorpha or Volitantia, while not found in Tupaia, were found in Ptilocercus. While these features may have evolved independently in Ptilocercus, it is perhaps more likely that they represent features that first evolved in the ancestral archontan and were then lost in one of the extant orders. This character analysis greatly reduces the supportive evidence for the Primatomorpha hypothesis.     

Molecular evidence on Primate phylogeny from DNA sequences

Evidence from DNA sequences on the phylogenetic systematics of primates is congruent with the evidence from morphology in grouping Cercopithecoidea (Old World monkeys) and Hominoidea (apes and humans) into Catarrhini, Catarrhini and Platyrrhini (ceboids or New World monkeys) into Anthropoidea, Lemuriformes and Lorisiformes into Strepsirhini, and Anthropoidea, Tarsioidea, and Strepsirhini into Primates. With regard to the problematic relationships of Tarsioidea, DNA sequences group it with Anthropoidea into Haplorhini. In addition, the DNA evidence favors retaining Cheirogaleidae within Lemuriformes in contrast to some morphological studies that favor placing Cheirogaleids in Lorisiformes. While parsimony analysis of the present DNA sequence data provides only modest support for Haplorhini as a monophyletic taxon, it provides very strong support for Hominoidea, Catarrhini, Anthropoidea, and Strepsirhini as monophyletic taxa. The parsimony DNA evidence also rejects the hypothesis that megabats are the sister group of either Primates or Dermoptera (flying lemur) or a Primate-Dermoptera clade and instead strongly supports the monophyly of Chiroptera, with megabats grouping with microbats at considerable distance from Primates. In contrast to the confused morphological picture of sister group relationships within Hominoidea, orthologous noncoding DNA sequences (spanning alignments involving as many as 20,000 base positions) now provide by the parsimony criterion highly significant evidence for the sister group relationships defined by a cladistic classification that groups the lineages to all extant hominoids into family Hominidae, divides this ape family into subfamilies Hylobatinae (gibbons) and Homininae, divides Homininae into tribes Pongini (orangutans) and Hominini, and divides Hominini into subtribes Gorillina (gorillas) and Hominina (humans and chimpanzees). A likelihood analysis of the largest body of these noncoding orthologues and counts of putative synapomorphies using the full range of sequence data from mitochondrial and nuclear genomes also find that humans and chimpanzees share the longest common ancestry. © 1994 Wiley-Liss, Inc.     

树鼩模型在人类病毒性疾病研究中的应用进展

由于树鼩在进化上接近于灵长类动物,在生理、生化及解剖学等生物学特性方面与人类有着相似之处,树鼩得到越来越多的关注,研究人员运用与其他动物相比具有多种优势的树鼩建立了一系列的疾病模型,如病毒类疾病、神经系统、肿瘤等,本文着重就树鼩在人类病毒疾病方面的研究进展进行概述。     

Colonization of the Philippines from Taiwan: a multi‐locus test of the biogeographic and phylogenetic relationships of isolated populations of shrews

Aim Colonization of the Philippines from Taiwan or neighbouring areas of the Asian mainland has been proposed as an important source of diversity for some plant and animal groups in the northern Philippines. Previous inferences, however, were based on taxonomic groupings, which sometimes fail to reflect phylogenetic history. Here, we test for colonization of the Philippines from the north in a group of shrews (Soricomorpha: Crocidura) using explicit inferences of evolutionary history. Location Southeast Asia. Methods We estimate the phylogenetic relationships of populations of shrews from Batan and Sabtang islands in the northern Philippines using DNA sequences from two mitochondrial genes and three nuclear loci. We employ topology tests to evaluate the possible relationships of these shrews to species from throughout Southeast Asia. Results We find conclusive evidence that shrews from Batan and Sabtang are closely related to Crocidura tanakae from Taiwan and additional specimens from the Asian mainland. Bayesian and frequentist topology tests using alignments of individual loci strongly reject any notion that shrews from Batan and Sabtang are part of the main Philippine radiation of Crocidura, indicating that the northernmost Philippine islands were almost certainly colonized by shrews from Taiwan or mainland Asia. Main conclusions Our results provide the first compelling evidence for colonization of the Philippine archipelago by a terrestrial vertebrate via a northern route. Invasion of the northern Philippines by shrews, however, did not lead to further range expansion to more southerly parts of the Philippines. This study, combined with previous results, documents that Crocidura colonized the Philippines at least three times. However, only one of these invasions led to in situ speciation and ubiquity across the archipelago. Our findings are part of a growing body of literature suggesting that oceanic archipelagos are often colonized multiple times by groups of closely related species, and occasionally from multiple sources.     

Evolution of C,D and S-Type Cystatins in Mammals: An Extensive Gene Duplication in Primates

Cystatins are a family of inhibitors of cysteine peptidases that comprises the salivary cystatins (D and S-type cystatins) and cystatin C. These cystatins are encoded by a multigene family (CST3, CST5, CST4, CST1 and CST2) organized in tandem in the human genome. Their presence and functional importance in human saliva has been reported, however the distribution of these proteins in other mammals is still unclear. Here, we performed a proteomic analysis of the saliva of several mammals and studied the evolution of this multigene family. The proteomic analysis detected S-type cystatins (S, SA, and SN) in human saliva and cystatin D in rat saliva. The evolutionary analysis showed that the cystatin C encoding gene is present in species of the most representative mammalian groups, i.e. Artiodactyla, Rodentia, Lagomorpha, Carnivora and Primates. On the other hand, D and S-type cystatins are mainly retrieved from Primates, and especially the evolution of S-type cystatins seems to be a dynamic process as seen in Pongo abelii genome where several copies of CST1-like gene (cystatin SN) were found. In Rodents, a group of cystatins previously identified as D and S has also evolved. Despite the high divergence of the amino acid sequence, their position in the phylogenetic tree and their genome organization suggests a common origin with those of the Primates. These results suggest that the D and S type cystatins have emerged before the mammalian radiation and were retained only in Primates and Rodents. Although the mechanisms driving the evolution of cystatins are unknown, it seems to be a dynamic process with several gene duplications evolving according to the birth-and-death model of evolution. The factors that led to the appearance of a group of saliva-specific cystatins in Primates and its rapid evolution remain undetermined, but may be associated with an adaptive advantage.     

树鼩资源的开发利用与标准化研究——我国实验动物资源建设发展战略探讨

树鼩（Tupaia belangeri）作为人类疾病动物模型,被应用于人类医学实验研究的多个领域,如各种类型的病毒性肝炎模型,流感病毒、登革热病毒、轮状病毒、疱疹病毒模型,糖尿病、胆结石、癌症病模型。但是,目前我国用于实验研究的树鼩几乎全都来自野外,对它们的微生物学、寄生虫学、遗传学、环境学等质量标准没有进行控制,它们本身携带的许多病原体会对实验结果的准确性造成影响,这既不符合国家对实验动物许可证管理的要求,也不利于我国实验动物科技工作与国际接轨的发展要求。因此,应该同步开展树鼩资源的开发利用和标准研究,使之纳入实验动物许可证的有效监控和管理,改变目前使用在前、质量控制标准研究在后的被动局面。     

A Congruence Study of Molecular and Morphological Data for Eutherian Mammals

The four orders of eutherian mammals which are traditionally placed in the superorder Archonta [Chiroptera (microbats and megabats), Dermoptera (flying lemurs), Primates (primates), and Scandentia (tree shrews)] are among the best-studied taxa of their infraclass from both the molecular and morphological perspectives. Nevertheless, the ordinal relationships of archontans remain unresolved. While morphological studies favor their monophyly, molecular investigations do not. To evaluate these opposing conclusions, parsimony analyses were conducted with three separate sets of DNA sequences from both the nuclear and mitochondrial genomes and one file of morphological data for archontans and other eutherian mammals. Statistical tests of character support and ordinal branching pattern differences documented that the three sets of DNA sequences and their results were homogeneous and congruent, thereby allowing for the combination of these data into one large matrix for further phylogenetic analysis. In contrast, these same tests revealed that the combined sequence and morphological files and their topologies were in strong conflict. Archontan monophyly was supported by the morphological evidence, but this arrangement was strongly rejected by the combined DNA sequences that favored instead a grouping of Dermoptera, Primates, and Scandentia with Lagomorpha (rabbits) and Rodentia (rodents). Resolution of these significant differences will require further evaluations about the homologies and evolutionary properties of the molecular and morphological characters and about the appropriateness of the chosen phylogenetic methods, as well as the incorporation of new comparative data from both sources.