Quantum chemical investigation of the electronic spectra of the keto, enol, and keto-imine tautomers of cytosine

The low-lying excited singlet states of the keto, enol, and keto-imine tautomers of cytosine have been investigated employing a combined density functional/multireference configuration interaction (DFT/MRCI) method. Unconstrained geometry optimizations have yielded out-of-plain distorted structures of the pi --> pi and n --> pi excited states of all cytosine forms. For the keto tautomer, the DFT/MRCI adiabatic excitation energy of the pi --> pi state (4.06 eV including zero-point vibrational energy corrections) supports the resonant two-photon ionization (R2PI) spectrum (Nir et al. Phys. Chem. Chem. Phys. 2002, 5, 4780). On its S1 potential energy surface, a conical intersection between the 1pipi state and the electronic ground state has been identified. The barrier height of the reaction along a constrained minimum energy path amounts to merely 0.2 eV above the origin and explains the break-off of the R2PI spectrum. The 1pipi minimum of the enol tautomer is found at considerably higher excitation energies (4.50 eV). Because of significant geometry shifts with respect to the ground state, long vibrational progressions are expected, in accord with experimental observations. For the keto-imine tautomer, a crossing of the 1pipi potential energy surface with the ground-state surface has been found, too. Its n --> pi minimum (3.27 eV) is located well below the conical intersection between the pi --> pi and S0 states, but it will be difficult to observe because of its small transition moment. The identified conical intersections of the pi --> pi excited states of the keto cytosine tautomers are made responsible for the ultrafast decay to the electronic ground states and thus may explain their subpicoseconds lifetimes.     

Ab initio investigation on the structures and spectra of the firefly luciferin

The ground state (S0) geometry of the firefly luciferin (LH2) was optimized by both DFT B3LYP and CASSCF methods. The vertical excitation energies (Tv) of three low-lying states (S1, S2, and S3) were calculated by TD-DFT B3LYP//CASSCF method. The S1 geometry was optimized by CASSCF method. Its Tv and the transition energy (Te) were calculated by MS-CASPT2//CASSCF method. Both the TD-DFT and MS-CASPT2 calculated S1 state Tv values agree with the experimental one. The IPEA shift greatly affects the MS-CASPT2 calculated Tv values. Some important excited states of LH2 and oxyluciferin (oxyLH2) are charge-transfer states and have more than one dominant configuration, so for deeply researching the firefly bioluminescence, the multireference calculations are desired.     

Theoretical investigations of the perylene electronic structure: Monomer,dimers, and excimers

The structural and electronic properties of perylene molecule, dimers, and excimers have been computationally studied. The present work represents the first systematic study of perylene molecule and dimer forms by means of long‐range corrected time‐dependent density functional theory (TDDFT) approaches. Initially, the study explores the photophysical properties of the molecular species. Vertical transitions to many excited singlet states have been computed and rationalized with different exchange‐correlation functionals. Differences between excitation energies are discussed and compared to the absorption spectrum of perylene in gas phase and diluted solution. De‐excitation energy from the relaxed geometry of the lowest excited singlet is in good agreement with the experimental fluorescence emission. Optimization of several coplanar forms of the perylene pair prove that, contrary to generalized gradient approximation (GGA) and hybrid exchange‐correlation functionals, corrected TDDFT is able to bind the perylene dimer in the ground state. Excitation energies from different dimer conformers point to dimer formation prior to photoexcitation. The fully relaxed excimer geometry belongs to the perfectly eclipsed conformation with D_2h symmetry. The excimer equilibrium intermolecular distance is shorter than the separation found for the ground state, which is an indication of stronger interchromophore interaction in the excimer state. Excimer de‐excitation energy is in rather good agreement with the excimer band of perylene in concentrated solution. The study also scans the energy profiles of the ground and lowest excited states along several geometrical distortions. The nature of the interactions responsible for the excimer stabilization is explored in terms of excitonic and charge resonance contributions. © 2015 Wiley Periodicals, Inc.     

Excited state properties, fluorescence energies, and lifetime of a poly(fluorene-pyridine) copolymer, based on TD-DFT investigation

The structural and electronic properties of the fluorene-pyridine copolymer (FPy)(n), (n = 1-4) were investigated theoretically by means of quantum mechanical calculations based on density functional theory (DFT) and time-dependent DFT (TD-DFT) using the B3LYP functional. Geometry optimizations of these oligomers were performed for the ground state and the lowest excited state. It was found that (FPy)(n) is nonplanar in its ground state, whereas a more pronounced trend toward planarity is observed in the S(1) state. Absorption and fluorescence energies have been extrapolated to infinite chain length making use of their good linearity with respect to 1/n. An extrapolated value of 2.64 eV is obtained for vertical excitation energy. The S(1)<--S(0) electronic excitation is characterized as a highest occupied molecular orbital to lowest unoccupied molecular orbital transition and is dominating in terms of oscillator strength. Fluorescence energies and radiative lifetime were calculated as well. The obtained results indicate that the fluorescence energy and radiative lifetime of (FPy)(n) are 2.16 eV and 0.38 ns, respectively. The decrease of fluorescence energy and radiative lifetime with the increase in the chain length is discussed.     

Laser-induced fluorescence and single vibronic level emission spectroscopy of chiral (R)-1-aminoindan and some of its clusters in a supersonic jet

Two low energy conformers of the chiral (R)-1-aminoindan molecule are identified in supersonic jet and their ground and excited states vibrational spectroscopy has been investigated by laser-induced fluorescence (LIF) excitation and single vibronic level (SVL) emission spectroscopy. Ab initio calculations confirm the existence of two lowest-energy structures, where the amino group is in equatorial position with its lone pair directed opposite to the aromatic electron cloud. Harmonic frequencies have been calculated for these two conformers at the DFT level with B3LYP functional. A low-frequency progression of 118 cm(-1) and 114 cm(-1), respectively, appears in the fluorescence excitation spectrum of the two conformers, with its ground state counterpart at approximately 147 cm(-1). It has been assigned to the puckering motion coupled with the ring flapping mode. The other calculated low-frequency mode corresponds to the puckering motion coupled with the ring twisting mode and its ground state frequency has been observed at 119 cm(-1) and 111 cm(-1) from SVL spectra. Both conformers form similar 1 : 1 water clusters, whose 0-0 transitions are shifted to the blue by 41 cm(-1) and 44 cm(-1), respectively, and whose SVL spectra are similar. Interestingly, one of the conformers seems to preferentially make complexes with (S)-methyllactate, while the other one shows selective complexation to (R)-methyllactate.     

Ab initio description of photoabsorption and electron transfer in a doubly-linked porphyrin-fullerene dyad

Structure, photoabsorption and excited states of two representative conformations obtained from molecular dynamics (MD) simulations of a doubly-linked porphyrin-fullerene dyad DHD6ee are studied by using both DFT and wavefunction based methods. Charge transfer from the donor (porphyrin) to the acceptor (fullerene) and the relaxation of the excited state are of special interest. The results obtained with LDA, GGA, and hybrid functionals (SVWN, PBE, and B3LYP, respectively) are analyzed with emphasis on the performance of used functionals as well as from the point of view of their comparison with wavefunction based methods (CCS, CIS(D), and CC2). Characteristics of the MD structures are retained in DFT optimization. The relative orientation of porphyrin and fullerene is significantly influencing the MO energies, the charge transfer (CT) in the ground state of the dyad and the excitation of ground state CT complex (g-CTC). At the same time, the excitation to the locally excited state of porphyrin is only little influenced by the orientation or cc distance. TD-DFT underestimates the excitation energy of the CT state, however for some cases (with relatively short donor-acceptor separations), the use of a hybrid functional like B3LYP alleviates the problem. Wavefunction based methods and CC2 in particular appear to overestimate the CT excitation energies but the inclusion of proper solvation models can significantly improve the results.     

H-bonded network rearrangements in the S0, S1 and D0 states of neutral and cationic p-cresol(H2O)(NH3) complexes

The H-bonded network rearrangements in the S(0), S(1) and D(0) states of the neutral and cationic p-CreOH(H(2)O)(NH(3)) complexes were studied experimentally by means of (1 + 1)/(1 + 1') REMPI (Resonantly Enhanced MultiPhoton Ionization) and time resolved LIF (Laser Induced Fluorescence) spectroscopies combined with DFT (Density Functional Theory) calculations at the B3LYP/6-311G++(d,p) level. A comparison of the rearrangement process of the H-bonded network in the three states is given. Two cyclic H-bonded isomers were found on the S(0) potential energy surface and the results indicate that the rearrangement in this state is unlikely at the temperature of the supersonic expansion due to the presence of a high-energy barrier (7503 cm(-1)). On the other hand, the re-determination of the S(1) excited state lifetimes confirms that neither the H-bonded rearrangement nor the excited state hydrogen transfer (ESHT) reaction takes place in the S(1) state at the excitation energies of this work. Thus, it is concluded that the absorption of the second photon to reach the D(0) state takes place from the S(1) state of the cyclic-(OH-OH(2)-NH(3)) isomer. A preferential evaporation of H(2)O upon vertical ionization of the cyclic-(OH-OH(2)-NH(3)) isomer is observed which is consistent with a statistical redistribution of the internal energy. Nevertheless, our theoretical calculations suggest that initial excitation of the H-bonded network rearrangement modes may also play a role to leave the H(2)O molecule as a terminal moiety in a chain-(OH-NH(3)-OH(2))(+) isomer. The reaction pathway for the solvent rearrangement involves a double proton transfer process with a very low energy barrier (575 cm(-1)) that is overcome at the vertical ionization energy of the complex.     

Imaging studies of the photodissociation of H2S+ cations. II

Ion imaging methods have been used to explore the photodissociation dynamics of state-selected H(2)S(+) and D(2)S(+) cations. Predissociation following one photon excitation to the A (2)A(1) state at wavelengths (385< or =lambda(phot)< or =420 nm) in the vicinity of the first dissociation threshold results in formation of ground state S(+) fragment ions; the partner H(2)(D(2)) fragments are deduced to be rotationally "cold." Two photon dissociation processes are also observed, resonance enhanced at the energy of one absorbed photon by the predissociating A state levels. Two photon excitation at these wavelengths is deduced to populate an excited state of (2)A(1) symmetry, which dissociates to electronically excited S(+)((2)D) products, together with vibrationally excited H(2)(D(2)) cofragments. Ground state SH(+)(SD(+)) fragments, attributable to a one photon dissociation process, are observed once lambda(phot)< or =325 nm. Two photon induced production of SH(+)(SD(+)) fragments is also observed, at all wavelengths studied (i.e., at all lambda(phot)< or =420 nm). These SH(+)(SD(+)) fragments are deduced to be formed in their singlet (i.e., a (1)Delta and b (1)Sigma(+)) excited states, with high levels of rotational excitation. The observed product branching and energy disposals are discussed within the context of the (limited) available knowledge relating to the excited electronic states of the H(2)S(+) cation.     

反式和顺式HOOOH的电子光谱的理论研究

用密度泛函方法(DFT)和全活化空间自洽场方法(CASSCF)以及耦合簇理论(CCSD)优化了反式和顺式HOOOH的平衡几何构型, 用DFT计算了HOOOH顺反异构化反应的势能曲线和谐振动频率. 用含时密度泛函理论(TD-DFT)和二阶全活化空间微扰理论(CASPT2)计算了反式和顺式HOOOH垂直激发能. 计算结果表明: (1)反式异构体比顺式异构体稳定; (2)两种稳定构型的异构化反应有两种路径; (3)对于垂直跃迁能最低的单态和叁态, 反式的垂直跃迁能比顺式的低; (4)在单激发态中, CASPT2方法预测的顺式HOOOH寿命最长的激发态为21A′′, 其跃迁能是167.43 nm, 寿命为 1.44×10−5 s; 反式HOOOH寿命最长的激发态为21A, 其跃迁能是165.52 nm, 寿命为 2.07×10−5 s.     

Computational investigation of the vibrational and electronic states of S2N2

The structures and vibrational frequencies of the ground and excited states of S(2)N(2) have been calculated using density functional (DF) methods. Time-dependent DF theory (TDDFT) has been used to calculate the excitation energies of the lowest 20 singlet-singlet transitions using a variety of methods. All computational methods predict a small highest occupied molecular orbital (HOMO)-lowest unoccupied molecular orbital (LUMO) gap. There is some disagreement in the ordering of the b(2g) and b(3g) pi orbitals. This is reflected in the ordering of the B(2u) and B(3u) states from the TDDFT calculations. The excitation energies and oscillator strengths strongly suggest it is the transitions to these states that are responsible for the experimental electronic spectrum. The calculated geometries and vibrational frequencies for these two states show that both have C(2v) equilibrium structures. Modelling of the vibrational progressions and band shapes suggest that the ordering of the states is B(2u)相似文献   

The potential energy curves of low-lying electronic states of S2O

Potential energy curves (PECs) of the symmetric and asymmetric bent S(2)O molecules are constructed using the configuration-based multireference second order perturbation theory and multireference configuration interaction with single and double excitations. Based on the PECs, the equilibrium structures of the ground state and several low-lying excited states, as well as the vertical and adiabatic transition energies, are obtained. Furthermore, avoided crossings and intersections displayed on the PECs are studied. The dissociation of states for the asymmetric bent S(2)O, especially the predissociative of the excited (~)C1A' state, is also discussed in detail. According to our calculations, the predissociation limit of (~)C1A' is found to be located in the vicinity of 2(6) or 2(5) (reckoning in the zero-point energy revision) S-S stretching vibration level, which is in good agreement with the available experimental data.     

Excited states of phosphorescent platinum(II) complexes containing N wedge C wedge N-coordinating tridentate ligands: spectroscopic investigations and time-dependent density functional theory calculations

The absorption and emission spectra of the Pt(II) complexes containing N wedge C wedge N-coordinating tridentate ligands, platinum(II) 1,3-di(2-pyridyl)benzene chloride [Pt(dpb)Cl] and platinum(II) 3,5-di(2-pyridyl)toluene chloride [Pt(dpt)Cl], together with their corresponding free ligands, 1,3-di(2-pyridyl)benzene (dpbH) and 3,5-di(2-pyridyl)toluene (dptH), have been analyzed by density functional theory (DFT) for the ground state and time-dependent DFT (TDDFT) for the excited states. T(1)(A(1)) and S(1)(B(2)) of the complexes (in C(2)(v) symmetry) were assigned on the basis of the calculated excitation energies as well as comparison of the experimental spectroscopic properties and the calculated states' characteristics. The calculated excitation energies for T(1) and S(1) of the complexes as well as those for T(1) of the free ligands were in good agreement with their observed values within 600 cm(-1). The d-pi* characters of the excited states were evaluated from the change in electron densities between the ground and excited states by Mulliken population analysis; values of 25% for T(1) and 32% for S(1) were obtained for both complexes. The calculated values of d-pi* character were found to be consistent with the reported emission lifetimes as well as the observed emission energy shifts from the corresponding free ligands. Most spectroscopic properties of the complexes and the free ligands, which include solvatochromic shift, Stokes shifts, methyl substitution shifts, and emission spectra profiles, were well explained from the calculation results.     

An AB initio SCF MO CI study of the n → π* transition of methylenimine

The electron correlation energies of both the ground and n → π* excited states of methylenimine (CH₂NH) are investigated by means of ab initio SCF MO CI calculations. Then n → π* singlet and triplet state energies of methylenimine are obtained through 3461-dimensional CI including the singly, doubly and triply excited configurations. the excitation energy from the ground state to the ¹(n → π*) state nearly coincides with that obtained in the framework of the singly excited configuration interaction (SECI) procedure. This result suggests that there is good cancellation of the correlation energy between the ground and the excited singlet sates, proving the usefulness of the SECI method for the excitation energies.     

Molecular Structure, Vibrational Spectrum and Ionization Energy of m-Dimethoxybenzene

The optimized molecular geometries of the three rotamers of m-dimethoxybenzene in the ground So and electronically excited Sl states were predicted by ab initio and density functional theory （DFF） calculations. Their vibrational spectra in the St state were studied by one color resonant two photon ionization （1C-R2PI） method, and their ionization energies were measured by two color resonant two photon ionization （2C-R2PI） experiment. The optimized molecular geometries showed that the total energy of conformer a was the lowest in the So state. Most of the active vibrations assigned from the 1C-R2PI spectrum were found to be of the in-plane ring modes. The ionization energies （IE） of conformers a, b and c were determined to be 63521, 64487 and 63755 cm^-1, respectively.     

Theoretical study of the electronic structure of MCH(2)(+)(M=Fe,Co,Ni)

State of the art coupled cluster (CC) methods are applied to accurately characterize the ground state electronic structure and photoelectron spectra of transition metal carbene ions MCH(2) (+) (M=Fe, Co, and Ni). The geometries and energies of the lowest energy quartet, triplet, and doublet electronic states as well as several low-lying vertical excitation energies of FeCH(2) (+), CoCH(2) (+), and NiCH(2) (+) are reported. The excitation energies are computed using the equation-of-motion CC and for states of different symmetries, by the energy differences of single reference ground and excited states (Delta-CC). The latter employ several reference states; the unrestricted Hartree-Fock, restricted open shell Hartree-Fock, and unrestricted Kohn-Sham. We conclude that the (2)A(1) electronic ground state of NiCH(2) (+) is separated by about 30.0 kJ/mol from the next highest state, and the lowest (4)B(1) and (4)B(2) states of FeCH(2) (+) as well as the (3)A(2) and (3)A(1) states of CoCH(2) (+) are nearly degenerate. The presence of metal-pi*(MCH(2)) charge transfer states with significant oscillator strengths in the visible/near-UV energy domain of the theoretical spectra of FeCH(2) (+) and CoCH(2) (+) are at the origin of the photofragmentation of these compounds observed after irradiation between 310 and 360 nm.     

Conical intersections in thymine

The mechanisms which are responsible for the radiationless deactivation of the npi* and pipi* excited singlet states of thymine have been investigated with multireference ab initio methods (the complete-active-space self-consistent-field (CASSCF) method and second-order perturbation theory with respect to the CASSCF reference (CASPT2)) as well as with the CC2 (approximated singles and doubles coupled-cluster) method. The vertical excitation energies, the equilibrium geometries of the 1npi*and 1pipi* states, as well as their adiabatic excitation energies have been determined. Three conical intersections of the S1 and S0 energy surfaces have been located. The energy profiles of the excited states and the ground state have been calculated with the CASSCF method along straight-line reaction paths leading from the ground-state equilibrium geometry to the conical intersections. All three conical intersections are characterized by strongly out-of-plane distorted geometries. The lowest-energy conical intersection (CI1) arises from a crossing of the lowest 1pipi* state with the electronic ground state. It is found to be accessible in a barrierless manner from the minimum of the 1pipi* state, providing a direct and fast pathway for the quenching of the population of the lowest optically allowed excited states of thymine. This result explains the complete diffuseness of the absorption spectrum of thymine in supersonic jets. The lowest vibronic levels of the optically nearly dark 1npi* state are predicted to lie below CI1, explaining the experimental observation of a long-lived population of dark excited states in gas-phase thymine.     

Role of electron-driven proton-transfer processes in the excited-state deactivation of the adenine-thymine base pair

Exploratory electronic structure calculations have been performed with the CC2 (simplified singles and doubles coupled-cluster) method for two conformers of the adenine (A)-thymine (T) base pair, with emphasis on excited-state proton-transfer reactions. The Watson-Crick conformer and the most stable (in the gas-phase) conformer of the A-T base pair have been considered. The equilibrium geometries of the ground state and of the lowest excited electronic states have been determined with the MP2 (second-order M?ller-Plesset) and CC2 methods, respectively. Vertical and adiabatic excitation energies, oscillator strengths, and dipole moments of the excited states are reported. Of particular relevance for the photochemistry of the A-T base pair are optically dark (1)pipi* states of charge-transfer character. Although rather high in energy at the ground-state equilibrium geometry, these states are substantially lowered in energy by the transfer of a proton, which thus neutralizes the charge separation. A remarkable difference of the energetics of the proton-transfer reaction is predicted for the two tautomers of A-T: in the Watson-Crick conformer, but not in the most stable conformer, a sequence of conical intersections connects the UV-absorbing (1)pipi* state in a barrierless manner with the electronic ground state. These conical intersections allow a very fast deactivation of the potentially reactive excited states in the Watson-Crick conformer. The results provide evidence that the specific hydrogen-bonding pattern of the Watson-Crick conformer endows this structure with a greatly enhanced photostability. This property of the Watson-Crick conformer of A-T may have been essential for the selection of this species as carrier of genetic information in early stages of the biological evolution.     

Spiro[4.4]nonatetraene and its Positive and Negative Radical Ions: Molectronic Structure Investigations

The electronic structure of spiro[4.4]nonatetraene 1 as well as that of its radical anion and cation were studied by different spectroscopies. The electron‐energy‐loss spectrum in the gas phase revealed the lowest triplet state at 2.98 eV and a group of three overlapping triplet states in the 4.5 – 5.0 eV range, as well as a number of valence and Rydberg singlet excited states. Electron‐impact excitation functions of pure vibrational and triplet states identified various states of the negative ion, in particular the ground state with an attachment energy of 0.8 eV, an excited state corresponding to a temporary electron attachment to the 2b₁ MO at an attachment energy of 2.7 eV, and a core excited state at 4.0 eV. Electronic‐absorption spectroscopy in cryogenic matrices revealed several states of the positive ion, in particular a richly structured first band at 1.27 eV, and the first electronic transition of the radical anion. Vibrations of the ground state of the cation were probed by IR spectroscopy in a cryogenic matrix. The results are discussed on the basis of density‐functional and CASSCF/CASPT2 quantum‐chemical calculations. In their various forms, the calculations successfully rationalized the triplet and the singlet (valence and Rydberg) excitation energies of the neutral molecule, the excitation energies of the radical cation, its IR spectrum, the vibrations excited in the first electronic absorption band, and the energies of the ground and the first excited states of the anion. The difference of the anion excitation energies in the gas and condensed phases was rationalized by a calculation of the Jahn‐Teller distortion of the anion ground state. Contrary to expectations based on a single‐configuration model for the electronic states of 1 , it is found that the gap between the first two excited states is different in the singlet and the triplet manifold. This finding can be traced to the different importance of configuration interaction in the two multiplicity manifolds.