Fast leave-one-out evaluation for dynamic gene selection

Gene selection procedure is a necessary step to increase the accuracy of machine learning algorithms that help in disease diagnosis based on gene expression data. This is commonly known as a feature subset selection problem in machine learning domain. A fast leave-one-out (LOO) evaluation formula for least-squares support vector machines (LS-SVMs) is introduced here that can guide our backward feature selection process. Based on that, we propose a fast LOO guided feature selection (LGFS) algorithm. The gene selection step size is dynamically adjusted according to the LOO accuracy estimation. For our experiments, the application of LGFS to the gene selection process improves the classifier accuracy and reduces the number of features required as well. The least number of genes that can maximize the disease classification accuracy is automatically determined by our algorithm.     

融合Shapley值和粒子群优化算法的混合特征选择算法

针对在模式分类问题中,数据往往存在不相关的或冗余的特征,从而影响分类的准确性的问题,提出一种融合Shapley值和粒子群优化算法的混合特征选择算法,以利用最少的特征获得最佳分类效果。在粒子群优化算法的局部搜索中引入博弈论的Shapley值,首先计算粒子（特征子集）中每个特征对分类效果的贡献值（Shapley值）,然后逐步删除Shapley值最低的特征以优化特征子集,进而更新粒子,同时也增强了算法的全局搜索能力,最后将改进后的粒子群优化算法运用于特征选择,以支持向量机分类器的分类性能和选择的特征数目作为特征子集评价标准,对UCI机器学习数据集和基因表达数据集的17个具有不同特征数量的医疗数据集进行分类实验。实验结果表明所提算法能有效地删除数据集中55%以上不相关的或冗余的特征,尤其对于中大型数据集能删减80%以上,并且所选择的特征子集也具有较好的分类能力,分类准确率能提高2至23个百分点。     

Improving the accuracy of decision tree induction by feature preselection

Selecting the right set of features for classification is one of the most important problems in designing a good classifier. Decision tree induction algorithms such as C4.5 have incorporated in their learning phase an automatic feature selection strategy, while some other statistical classification algorithms require the feature subset to be selected in a preprocessing phase. It is well known that correlated and irrelevant features may degrade the performance of the C4.5 algorithm. In our study, we evaluated the influence of feature preselection on the prediction accuracy of C4.5 using a real-world data set. We observed that accuracy of the C4.5 classifier could be improved with an appropriate feature preselection phase for the learning algorithm. Beyond that, the number of features used for classification can be reduced, which is important for image interpretation tasks since feature calculation is a time-consuming process.     

Learning to classify with missing and corrupted features

A common assumption in supervised machine learning is that the training examples provided to the learning algorithm are statistically identical to the instances encountered later on, during the classification phase. This assumption is unrealistic in many real-world situations where machine learning techniques are used. We focus on the case where features of a binary classification problem, which were available during the training phase, are either deleted or become corrupted during the classification phase. We prepare for the worst by assuming that the subset of deleted and corrupted features is controlled by an adversary, and may vary from instance to instance. We design and analyze two novel learning algorithms that anticipate the actions of the adversary and account for them when training a classifier. Our first technique formulates the learning problem as a linear program. We discuss how the particular structure of this program can be exploited for computational efficiency and we prove statistical bounds on the risk of the resulting classifier. Our second technique addresses the robust learning problem by combining a modified version of the Perceptron algorithm with an online-to-batch conversion technique, and also comes with statistical generalization guarantees. We demonstrate the effectiveness of our approach with a set of experiments.     

Facing the classification of binary problems with a hybrid system based on quantum-inspired binary gravitational search algorithm and K-NN method

Since given classification data often contains redundant, useless or misleading features, feature selection is an important pre-processing step for solving classification problems. This problem is often solved by applying evolutionary algorithms to decrease the dimensional number of features involved. Removing irrelevant features in the feature space and identifying relevant features correctly is the primary objective, which can increase classification accuracy. In this paper, a novel QBGSA–K-NN hybrid system which hybridizes the quantum-inspired binary gravitational search algorithm (QBGSA) with the K-nearest neighbor (K-NN) method with leave-one-out cross-validation (LOOCV) is proposed. The main aim of this system is to improve classification accuracy with an appropriate feature subset in binary problems. We evaluate the proposed hybrid system on several UCI machine learning benchmark examples. The experimental results show that the proposed method is able to select the discriminating input features correctly and achieve high classification accuracy which is comparable to or better than well-known similar classifier systems.     

融合序列后向选择与支持向量机的混合式特征选择算法

维度灾难是机器学习任务中的常见问题,特征选择算法能够从原始数据集中选取出最优特征子集,降低特征维度.提出一种混合式特征选择算法,首先用卡方检验和过滤式方法选择重要特征子集并进行标准化缩放,再用序列后向选择算法（SBS）与支持向量机（SVM）包裹的SBS-SVM算法选择最优特征子集,实现分类性能最大化并有效降低特征数量.实验中,将包裹阶段的SBS-SVM与其他两种算法在3个经典数据集上进行测试,结果表明,SBS-SVM算法在分类性能和泛化能力方面均具有较好的表现.     

A genetic algorithm-based method for feature subset selection

As a commonly used technique in data preprocessing, feature selection selects a subset of informative attributes or variables to build models describing data. By removing redundant and irrelevant or noise features, feature selection can improve the predictive accuracy and the comprehensibility of the predictors or classifiers. Many feature selection algorithms with different selection criteria has been introduced by researchers. However, it is discovered that no single criterion is best for all applications. In this paper, we propose a framework based on a genetic algorithm (GA) for feature subset selection that combines various existing feature selection methods. The advantages of this approach include the ability to accommodate multiple feature selection criteria and find small subsets of features that perform well for a particular inductive learning algorithm of interest to build the classifier. We conducted experiments using three data sets and three existing feature selection methods. The experimental results demonstrate that our approach is a robust and effective approach to find subsets of features with higher classification accuracy and/or smaller size compared to each individual feature selection algorithm.     

Classifier ensemble construction with rotation forest to improve medical diagnosis performance of machine learning algorithms

Improving accuracies of machine learning algorithms is vital in designing high performance computer-aided diagnosis (CADx) systems. Researches have shown that a base classifier performance might be enhanced by ensemble classification strategies. In this study, we construct rotation forest (RF) ensemble classifiers of 30 machine learning algorithms to evaluate their classification performances using Parkinson's, diabetes and heart diseases from literature.While making experiments, first the feature dimension of three datasets is reduced using correlation based feature selection (CFS) algorithm. Second, classification performances of 30 machine learning algorithms are calculated for three datasets. Third, 30 classifier ensembles are constructed based on RF algorithm to assess performances of respective classifiers with the same disease data. All the experiments are carried out with leave-one-out validation strategy and the performances of the 60 algorithms are evaluated using three metrics; classification accuracy (ACC), kappa error (KE) and area under the receiver operating characteristic (ROC) curve (AUC).Base classifiers succeeded 72.15%, 77.52% and 84.43% average accuracies for diabetes, heart and Parkinson's datasets, respectively. As for RF classifier ensembles, they produced average accuracies of 74.47%, 80.49% and 87.13% for respective diseases.RF, a newly proposed classifier ensemble algorithm, might be used to improve accuracy of miscellaneous machine learning algorithms to design advanced CADx systems.     

基于近似Markov Blanket和动态互信息的特征选择算法

针对大量无关和冗余特征的存在可能降低分类器性能的问题,提出了一种基于近似Markov Blanket和动态互信息的特征选择算法。该算法利用互信息作为特征相关性的度量准则,并在未识别的样本上对互信息进行动态估值,利用近似Markov Blanket原理准确地去除冗余特征,从而获得远小于原始特征规模的特征子集。通过仿真试验证明了该算法的有效性。以支持向量机为分类器,在公共数据集UCI上进行了试验,并与DMIFS和ReliefF算法进行了对比。试验结果证明,该算法选取的特征子集与原始特征子集相比,以远小于原始特征规模的特征子集获得了高于或接近于原始特征集合的分类结果。     

Online Feature Selection of Class Imbalance via PA Algorithm

Imbalance classification techniques have been frequently applied in many machine learning application domains where the number of the majority (or positive) class of a dataset is much larger than that of the minority (or negative) class. Meanwhile, feature selection (FS) is one of the key techniques for the high-dimensional classification task in a manner which greatly improves the classification performance and the computational efficiency. However, most studies of feature selection and imbalance classification are restricted to off-line batch learning, which is not well adapted to some practical scenarios. In this paper, we aim to solve high-dimensional imbalanced classification problem accurately and efficiently with only a small number of active features in an online fashion, and we propose two novel online learning algorithms for this purpose. In our approach, a classifier which involves only a small and fixed number of features is constructed to classify a sequence of imbalanced data received in an online manner. We formulate the construction of such online learner into an optimization problem and use an iterative approach to solve the problem based on the passive-aggressive (PA) algorithm as well as a truncated gradient (TG) method. We evaluate the performance of the proposed algorithms based on several real-world datasets, and our experimental results have demonstrated the effectiveness of the proposed algorithms in comparison with the baselines.     

Dynamic Adaboost learning with feature selection based on parallel genetic algorithm for image annotation

Image annotation can be formulated as a classification problem. Recently, Adaboost learning with feature selection has been used for creating an accurate ensemble classifier. We propose dynamic Adaboost learning with feature selection based on parallel genetic algorithm for image annotation in MPEG-7 standard. In each iteration of Adaboost learning, genetic algorithm (GA) is used to dynamically generate and optimize a set of feature subsets on which the weak classifiers are constructed, so that an ensemble member is selected. We investigate two methods of GA feature selection: a binary-coded chromosome GA feature selection method used to perform optimal feature subset selection, and a bi-coded chromosome GA feature selection method used to perform optimal-weighted feature subset selection, i.e. simultaneously perform optimal feature subset selection and corresponding optimal weight subset selection. To improve the computational efficiency of our approach, master-slave GA, a parallel program of GA, is implemented. k-nearest neighbor classifier is used as the base classifier. The experiments are performed over 2000 classified Corel images to validate the performance of the approaches.     

基于文化基因算法和最小二乘支持向量机的安全数据特征处理方法

随着各类生物智能演化算法的日益成熟,基于演化技术及其混合算法的特征选择方法不断涌现。针对高维小样本安全数据的特征选择问题,将文化基因算法(Memetic Algorithm,MA)与最小二乘支持向量机(Least Squares Support Vector Machine,LS-SVM)进行结合,设计了一种封装式(Wrapper)特征选择方法(MA-LSSVM)。该方法利用最小二乘支持向量机易于求解的特点来构造分类器,以分类的准确率作为文化基因算法寻优过程中适应度函数的主要成分。实验表明,MA-LSSVM可以较高效地、稳定地获取对分类贡献较大的特征,降低了数据维度,提高了分类效率。     

A new particle swarm feature selection method for classification

Searching for an optimal feature subset from a high-dimensional feature space is an NP-complete problem; hence, traditional optimization algorithms are inefficient when solving large-scale feature selection problems. Therefore, meta-heuristic algorithms are extensively adopted to solve such problems efficiently. This study proposes a regression-based particle swarm optimization for feature selection problem. The proposed algorithm can increase population diversity and avoid local optimal trapping by improving the jump ability of flying particles. The data sets collected from UCI machine learning databases are used to evaluate the effectiveness of the proposed approach. Classification accuracy is used as a criterion to evaluate classifier performance. Results show that our proposed approach outperforms both genetic algorithms and sequential search algorithms.     

Feature elimination based random subspace ensembles learning for ECG arrhythmia diagnosis

Various methods for ensembles selection and classifier combination have been designed to optimize the performance of ensembles of classifiers. However, use of large number of features in training data can affect the classification performance of machine learning algorithms. The objective of this paper is to represent a novel feature elimination (FE) based ensembles learning method which is an extension to an existing machine learning environment. Here the standard 12 lead ECG signal recordings data have been used in order to diagnose arrhythmia by classifying it into normal and abnormal subjects. The advantage of the proposed approach is that it reduces the size of feature space by way of using various feature elimination methods. The decisions obtained from these methods have been coalesced to form a fused data. Thus the idea behind this work is to discover a reduced feature space so that a classifier built using this tiny data set would perform no worse than a classifier built from the original data set. Random subspace based ensembles classifier is used with PART tree as base classifier. The proposed approach has been implemented and evaluated on the UCI ECG signal data. Here, the classification performance has been evaluated using measures such as mean absolute error, root mean squared error, relative absolute error, F-measure, classification accuracy, receiver operating characteristics and area under curve. In this way, the proposed novel approach has provided an attractive performance in terms of overall classification accuracy of 91.11 % on unseen test data set. From this work, it is shown that this approach performs well on the ensembles size of 15 and 20.     

基于SAC的特征选择算法

特征选择通过移除不相关和冗余的特征来提高学习算法的性能。基于进化算法在求解优化问题时表现出的优越性能,提出FSSAC特征选择方法。新的初始化策略和评估函数使得SAC能将特征选择作为离散空间搜索问题来解决,利用特征子集的准确率指导SAC的采样阶段。在实验阶段,FSSAC结合SVM,J48和KNN分类器,通过UCI数据集完成验证,并与FSFOA,HGAFS,PSO等算法进行了比较。实验结果表明,FSSAC可以提高分类器的分类准确率,且具有良好的泛化性能。除此之外,对FSSAC和其他算法在特征空间维度缩减情况方面做了对比。     

引力搜索优化ELM的企业财务危机预警方法

为提高企业财务危机的预测准确率,提出一种基于引力搜索算法优化核极限学习机(KELM)的并行模型PHGSA-KELM。模型考虑了特征选择机制和参数优化两者对KELM模型起着同等重要的作用,提出改进的引力搜索算法(HGSA)同步实现特征选择机制和KELM参数优化,同时设计的线性加权多目标函数综合考虑了分类精度和特征子集数量,改善了算法的分类性能,并且基于多核平台的多线程并行方式进一步提高了算法的计算效率。通过真实数据集的实验结果表明,提出的模型不仅获得了较少的特征子集个数,找出了与企业财务危机紧密相关的特征,得到了很高的分类准确率,并且计算效率也得到极大提高,是一种有效的企业财务危机预警模型。     

New hybrid data mining model for credit scoring based on feature selection algorithm and ensemble classifiers

The aim of this paper is to propose a new hybrid data mining model based on combination of various feature selection and ensemble learning classification algorithms, in order to support decision making process. The model is built through several stages. In the first stage, initial dataset is preprocessed and apart of applying different preprocessing techniques, we paid a great attention to the feature selection. Five different feature selection algorithms were applied and their results, based on ROC and accuracy measures of logistic regression algorithm, were combined based on different voting types. We also proposed a new voting method, called if_any, that outperformed all other voting methods, as well as a single feature selection algorithm's results. In the next stage, a four different classification algorithms, including generalized linear model, support vector machine, naive Bayes and decision tree, were performed based on dataset obtained in the feature selection process. These classifiers were combined in eight different ensemble models using soft voting method. Using the real dataset, the experimental results show that hybrid model that is based on features selected by if_any voting method and ensemble GLM + DT model performs the highest performance and outperforms all other ensemble and single classifier models.     

ReliefF-MI: An extension of ReliefF to multiple instance learning

In machine learning the so-called curse of dimensionality, pertinent to many classification algorithms, denotes the drastic increase in computational complexity and classification error with data having a great number of dimensions. In this context, feature selection techniques try to reduce dimensionality finding a new more compact representation of instances selecting the most informative features and removing redundant, irrelevant, and/or noisy features. In this paper, we propose a filter-based feature selection method for working in the multiple-instance learning scenario called ReliefF-MI; it is based on the principles of the well-known ReliefF algorithm. Different extensions are designed and implemented and their performance checked in multiple instance learning. ReliefF-MI is applied as a pre-processing step that is completely independent from the multi-instance classifier learning process and therefore is more efficient and generic than wrapper approaches proposed in this area. Experimental results on five benchmark real-world data sets and 17 classification algorithms confirm the utility and efficiency of this method, both statistically and from the point of view of execution time.     

A novel ACO–GA hybrid algorithm for feature selection in protein function prediction

Protein function prediction is an important problem in functional genomics. Typically, protein sequences are represented by feature vectors. A major problem of protein datasets that increase the complexity of classification models is their large number of features. Feature selection (FS) techniques are used to deal with this high dimensional space of features. In this paper, we propose a novel feature selection algorithm that combines genetic algorithms (GA) and ant colony optimization (ACO) for faster and better search capability. The hybrid algorithm makes use of advantages of both ACO and GA methods. Proposed algorithm is easily implemented and because of use of a simple classifier in that, its computational complexity is very low. The performance of proposed algorithm is compared to the performance of two prominent population-based algorithms, ACO and genetic algorithms. Experimentation is carried out using two challenging biological datasets, involving the hierarchical functional classification of GPCRs and enzymes. The criteria used for comparison are maximizing predictive accuracy, and finding the smallest subset of features. The results of experiments indicate the superiority of proposed algorithm.