Variation in the trophic position of common stream fishes and its relationship to the presence of a rare fish,northern leatherside chub (Lepidomeda copei)

Variation in trophic position can be caused by structural changes in food webs that may affect the presence of, or be affected by the presence of, individual species. We examined variation in the trophic position of fishes across 14 stream sites in the Bear River drainage, WY, USA. This drainage is the focus of ongoing conservation of northern leatherside chub (Lepidomeda copei). Our goals were (i) to describe variation in trophic position of individual species and (ii) to determine whether these measures differed between sites with and without northern leatherside chub. Mean trophic position of individual fish species varied between 0 and 3 trophic positions across sites. For two of these species, trophic position declined at sites without northern leatherside chub. Importantly, habitat surveys from a previous study at 10 of these sites revealed no differences in habitat suitability for northern leatherside chub. This suggests that trophic position revealed systematic differences among sites that were not apparent based on traditional species‐habitat modelling. We outline possible mechanisms behind these patterns and argue that monitoring variation in trophic position can complement traditional, habitat‐based methods for understanding species distributions.     

Effect of predation and habitat quality on growth and reproduction of a stream fish

Billman EJ, Tjarks BJ, Belk MC. Effect of predation and habitat quality on growth and reproduction of a stream fish.
Ecology of Freshwater Fish 2011: 20: 102–113. © 2010 John Wiley & Sons A/S Abstract – Anthropogenic disturbances are rarely independent, requiring native fishes to respond to multiple factors to persist in changing environments. We examined the interaction of predation environment (presence of introduced brown trout, Salmo trutta) and habitat quality on growth and reproduction of southern leatherside chub, Lepidomeda aliciae, a small‐bodied stream fish native to central Utah, USA. Southern leatherside chub were sampled from four streams representing a complete two‐factor cross of predation environment and habitat quality. Growth was estimated using increment analysis of annuli on otoliths, and reproductive traits were measured for both sexes. Southern leatherside chub growth was greater in high‐quality than in low‐quality habitats, and greater in predator than in nonpredator environments. However, fish exhibited a greater growth response to presence of brown trout in low‐quality habitats. Southern leatherside chub growth followed predictions of plastic responses to resource availability based on habitat quality and predation environment (lethal vs. nonlethal effects). Reproductive allocation (gonad wet mass) was significantly greater in low‐quality versus high‐quality habitats, but was unaffected by predation environment. Other female life‐history traits were affected either by both effects or their interaction. Reproductive responses to habitat quality and predation environment were consistent with predictions based on differential mortality. Southern leatherside chub growth and reproduction responded differently to the combination of habitat quality and predation environment, thus demonstrating the importance of assessing interacting effects of anthropogenic disturbances to more fully comprehend impacts on native species and to appropriately manage, recover and restore these species and their habitats.     

Variation in microhabitat use of the threatened spotfin chub (Erimonax monachus) among stream sites and seasons

Abstract – The spotfin chub Erimonax monachus is a rare cyprinid fish endemic to the Tennessee River drainage, and it is federally listed as threatened in the USA. Microhabitat use of spotfin chubs was studied via stream snorkelling in the Emory River watershed, Tennessee, one of the last remaining populations of this species. We used a Bayesian generalised linear mixed model to evaluate microhabitat covariates related to the presence/absence of spotfin chubs among eight stream sites across three seasons (early summer, late summer and fall). In general, spotfin chubs were more likely to be present in microhabitats characterised by boulder/bedrock substrates, medium to high velocity, and medium depth (typical of the run habitat). However, the patterns were not necessarily consistent among seasons or stream sites, due partly to interactions between microhabitat and macrohabitat covariates. Specifically, spotfin chubs were more selective of bedrock and boulder substrate at smaller stream sites where they were less abundant, and they were more selective of higher velocity at warmer stream temperatures (early and late summer). Our data indicate that spotfin chubs may exhibit flexible microhabitat use to some extent, and their microhabitat use may differ by macrohabitat characteristics such as stream size and water temperature. This study provided a refined understanding of microhabitat use of spotfin chubs and suggests that effective conservation of this declining species should identify and protect available suitable habitat across space and time.     

Qualitative and quantitative effects of reintroduced beavers on stream fish

Reintroduction of beaver (Castor spp) may facilitate rehabilitation of freshwater habitats providing a cost‐effective sustainable means of improving ecological conditions. Despite extensive research, debate and consultation, a general consensus on the impact of beaver on fishes has proven elusive because of variability in biological response. This paper provides a systematic review of the impacts of beaver dams on fishes and fish habitat based on a meta‐analysis of the literature and expert opinion. Research is regionally biased to North America (88%). The most frequently cited benefits of beaver dams were increased habitat heterogeneity, rearing and overwintering habitat and flow refuge, and invertebrate production. Impeded fish movement because of dams, siltation of spawning habitat and low oxygen levels in ponds were the most often cited negative impacts. Benefits (184) were cited more frequently than costs (119). Impacts were spatially and temporally variable and differed with species. The majority of 49 North American and European experts considered beaver to have an overall positive impact on fish populations, through their influence on abundance and productivity. Perceived negative effects related to the movement of aquatic organisms in tributary streams, including upstream and downstream migrating salmonids, and the availability of suitable spawning habitat.     

Ecology,management, and conservation implications of North American beaver (Castor canadensis) in dryland streams

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Ecological factors influencing movement of creek chub in an intermittent stream of the Ozark Mountains,Arkansas

Increasing our understanding of the traits and adaptations that promote the survival and persistence of organisms in highly dynamic environments will aid in the conservation of populations and communities. Projected effects of climate change and land alterations suggest headwater streams may become more intermittent and less predictable, consequently altering biological processes (i.e. dispersal or movement) that govern population dynamics. Few studies have provided insight into movement dynamics of nongame fishes in small headwater streams that commonly experience intermittent conditions. The purpose of this study was to investigate movement of a fish species adapted to intermittent stream conditions. Our objectives were to (i) describe the general movement patterns of creek chub, Semotilus atromaculatus, in an intermittent stream and (ii) investigate which ecological factors may influence movement in patchy environments. Creek chub displayed some of the longest distances moved compared to many other stream fishes in perennial streams (179–1069 m seasonal averages; 4678 m maximum distance). Directional movement was significant only in May with more individuals moving upstream. The probability of creek chub movement was inversely related to habitat complexity and pool area. Creek chub adapted to intermittent stream conditions not only exhibited increases in the frequency and distance of movement compared to other nongame fishes, but also exhibited movements in relation to local habitat metrics. These results demonstrate some of the potential adaptations that are likely to promote the survival and persistence of populations in highly dynamic environments such as intermittent streams.     

Variation in intrinsic individual growth rate among populations of leatherside chub (Snyderichthys copei Jordan & Gilbert): adaptation to temperature or length of growing season?

Abstract –  Leatherside chub ( Snyderichthyes copei Jordan & Gilbert) comprises two lineages (northern and southern) whose centres of geographical range differ by about 3° latitude corresponding to about 30% shorter growing season and about 2 °C lower mean temperature during the growing season. We document patterns of variation in size-at-age among populations of leatherside chub in nature, and we test for variation in intrinsic growth rate of juvenile chub in a common-environment experiment to determine if lineages exhibit different intrinsic growth rates. Northern leatherside chubs at ages 1–3 were about 15% shorter in length compared with southern populations. Variation in hatching date or age at maturity could not account for differences in growth and body size, suggesting that temperature-specific intrinsic growth rates differed among populations. Based on a common environment experiment, we found that reaction norms for temperature-specific growth in length and mass were crossed. At the lower temperature, individuals from the north exhibited higher intrinsic growth in length, and at the higher temperature individuals from the south exhibited higher intrinsic growth in mass. Crossing reaction norms for temperature-specific intrinsic growth rates support a model of local adaptation to thermal regime.     

Habitat use and population structure of four native minnows (family Cyprinidae) in the upper Missouri and lower Yellowstone rivers, North Dakota (USA)

Abstract – In 1997 and 1998, sampling was conducted on the Missouri and Yellowstone rivers, North Dakota, to obtain information on the distribution, abundance, and habitat use of the flathead chub (Platygobio gracilis Richardson), sicklefin chub (Macrhybopsis meeki Jordan & Evermann), sturgeon chub (Macrhybopsis gelida Girard), and western silvery minnow (Hybognathus argyritis Girard), four declining fish species (family Cyprinidae) native to the Missouri River basin, USA. The study area consisted of four distinct river segments near the confluence of the Missouri and Yellowstone rivers – three moderately altered segments that were influenced by a main‐stem dam and one quasi‐natural segment. One moderately altered segment was located at the confluence of the two rivers (mixing‐zone segment (MZS)). The other two moderately altered segments were in the Missouri River adjacent to the MZS and extended up‐river (above‐confluence segment (ACS)) and down‐river (below‐confluence segment (BCS)) from this segment. The quasi‐natural segment (Yellowstone River segment (YRS)) extended up‐river from the MZS in the Yellowstone River. Catch rates with the trawl for sicklefin chub and sturgeon chub and catch rates with the bag seine for flathead chub and western silvery minnow were highest in the BCS and YRS. Most sicklefin and sturgeon chubs were captured in the deep, high‐velocity main channel habitat with the trawl (sicklefin chub, 97%; sturgeon chub, 85%), whereas most flathead chub and western silvery minnow were captured in the shallow, low‐velocity channel border habitat with the bag seine (flathead chub, 99%; western silvery minnow, 98%). Best‐fit regression models correctly predicted the presence or absence of sicklefin chub, flathead chub, and western silvery minnow more than 80% of the time. Sturgeon chub presence and absence were predicted correctly 55% of the time. Best‐fit regression models fit to fish number data for flathead chub, sicklefin chub, and sturgeon chub and fish catch‐per‐unit‐effort (CPUE) data for flathead chub also provided good fits, with R² values ranging from 0.32 to 0.55 (P < 0.0001). The higher density and catch of the four native minnows in the YRS and BCS suggest that these two segments are better habitat than the ACS and MZS.     

Effects of small dam condition and drainage on stream fish community structure

Low‐head dams are ubiquitous in eastern North America, and small dam removal projects seek to improve habitat conditions for resident and migratory fishes. Effects of small dams of varying status on local fish communities are poorly documented, and recent work suggests benefits of maintaining fragmentation. We sampled fish at 25 dams (9 breached, 7 relict, 9 intact) in three river basins in North Carolina, USA. Fishes were sampled at three reaches/dam from 2010 to 2011. Study reaches were located upstream (free‐flowing reaches), downstream (tailrace) and >500 m downstream of dams (n = 75 reaches). Analyses revealed significantly elevated fish CPUE, taxa richness and percentage intolerant taxa in intact dam tailraces suggesting small dams may improve conditions for resident taxa. Breached dam tailrace reaches exhibited lower fish CPUE, taxa richness and percentage intolerant taxa relative to upstream reference reaches. Relict dams exhibited no between‐reach differences in fish community metrics. Nonmetric multidimensional scaling revealed drainage‐specific stream fish responses across study drainages. Tar and Roanoke drainage streams with intact and relict dams supported fish assemblages indicative of natural communities, whereas Neuse Drainage streams with intact and breached dams contained disturbed habitats and communities. These data demonstrate fish community responses to dam condition are drainage specific but communities in streams with intact and relict dams are largely similar. Additionally, breached dams may warrant higher removal priorities than intact dams because they negatively influence fish communities. The variability in response to some dams indicates managers, regardless of region or country, should consider holistic approaches to dam removals on a case‐by‐case basis.     

Antipredator responses of two native stream fishes to an introduced predator: does similarity in morphology predict similarity in behavioural response?

Abstract –  Antipredator defences in prey species are moulded largely by predation. One general expectation is that an organism's size, shape or morphology determines the optimal set of corresponding behavioural antipredator responses. We test the hypothesis that species with similar morphology and ecology exhibit similar antipredator responses by quantifying and comparing avoidance and escape responses of two similar species, leatherside chub and redside shiner. We also examine how antipredator responses of these two species translate into mortality using experimental stream enclosures. In the presence of brown trout, redside shiner increased activity level, responded to a simulated attack sooner, quicker and had a more manoeuvrable escape than leatherside chub. Predation by brown trout decreased survival of both species, but caused higher levels of mortality in leatherside chub compared with redside shiner. Similar morphology and ecology of these two prey species does not correspond to similarity in avoidance and escape responses, and this difference has consequences for the long-term survival of these species in the presence of introduced brown trout.     

Beaver dams shift desert fish assemblages toward dominance by non‐native species (Verde River,Arizona, USA)

The reintroduction of beaver (Castor canadensis) into arid and semi‐arid rivers is receiving increasing management and conservation attention in recent years, yet very little is known about native versus non‐native fish occupancy in beaver pond habitats. Streams of the American Southwest support a highly endemic, highly endangered native fish fauna and abundant non‐native fishes, and here we investigated the hypothesis that beaver ponds in this region may lead to fish assemblages dominated by non‐native species that favour slower‐water habitat. We sampled fish assemblages within beaver ponds and within unimpounded lotic stream reaches in the mainstem and in tributaries of the free‐flowing upper Verde River, Arizona, USA. Non‐native fishes consistently outnumbered native species, and this dominance was greater in pond than in lotic assemblages. Few native species were recorded within ponds. Multivariate analysis indicated that fish assemblages in beaver ponds were distinct from those in lotic reaches, in both mainstem and tributary locations. Individual species driving this distinction included abundant non‐native green sunfish (Lepomis cyanellus) and western mosquitofish (Gambusia affinis) in pond sites, and native desert sucker (Catostomus clarkii) in lotic sites. Overall, this study provides the first evidence that, relative to unimpounded lotic habitat, beaver ponds in arid and semi‐arid rivers support abundant non‐native fishes; these ponds could thus serve as important non‐native source areas and negatively impact co‐occurring native fish populations.     

Factors affecting habitat selection by a small spawning charr population, bull trout, Salvelinus confluentus: implications for recovery of an endangered species

Bull trout, Salvelinus confluentus (Suckley), populations are declining in many streams of North America and are listed under the Endangered Species Act in the United States. Many small populations are isolated in fragmented habitats where spawning conditions and success are not well understood. Factors affecting habitats selected for redds by spawning bull trout and redd habitat characteristics within Gold Creek, a headwater stream in the Yakima River within the Columbia River basin, Washington State, USA, were evaluated. Most spawning (>80% of the redds) occurred in upstream habitats after dewatering of downstream channels isolated fish. Habitats were selected or avoided in proportions different to their availability. For example, most bull trout selected pools and glides and avoided riffles despite the latter being more readily available. Although preferences suggest influences of prolonged fish entrapment, site fidelity could be important. A habitat with redds commonly contained abundant cover, gravel substratum and higher stream flows. The major factors influencing habitat selection by spawning fish and their persistence in streams of the Yakima and Columbia River regions include entrapment of fish by dewatering of channels and geographical isolation by dams. The goal of the US Government's recovery plan is ‘to ensure the long‐term persistence of self‐sustaining bull trout populations’. Recovery plans linked to provisions for protecting and conserving bull trout populations and their habitats were recommended. Landscape approaches are needed that provide networks of refuge habitats and greater connectivity between populations. Concurrent recovery efforts are encouraged to focus on protecting small populations and minimizing dangers of hybridization.     

Defining critical habitat conditions for the conservation of three endemic and endangered cyprinids in a Mediterranean intermittent river before the onset of drought

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Habitat specialization and sensitivity to change in a threatened crayfish occupying upland streams

1. Crayfish are culturally and ecologically important species in freshwater ecosystems, but many are now threatened with extinction, due to threats such as habitat loss. Depending on their habitat selectivity and sensitivity, freshwater crayfish could provide effective targets for stream monitoring, restoration and conservation. This study used repeated field surveys of the threatened Murray crayfish, Euastacus armatus (family Parastacidae), to establish their habitat preferences and sensitivity to habitat loss across mesohabitat and microhabitat scales within upland streams of south‐east Australia. 2. Selectivity analysis revealed that upland populations of E. armatus displayed a strong preference for areas of intermediate water flow velocity, deeper water, and stream beds dominated by boulders and gravel. Variations in E. armatus density among and within the two upland streams aligned with these microhabitat preferences, with best‐subsets analyses revealing that E. armatus abundance hotspots were best predicted by models combining water depth with percentage cover of boulders, gravel and overhanging riparian vegetation. 3. Major shifts in stream habitat condition from 2009 to 2015 (e.g. 32% and 50% decline in boulder and overhanging vegetation cover, respectively) was associated with a 91% decline in E. armatus mean density within glide‐pool mesohabitats. 4. These findings highlight how habitat specialization in threatened crayfish such as E. armatus may render them sensitive to changes in stream habitat condition, and how targeted monitoring, restoration and conservation of their preferred habitats could yield multiple benefits for montane freshwater ecosystems. Copyright © 2016 John Wiley & Sons, Ltd.     

Distribution modelling to guide stream fish conservation: an example using the mountain sucker in the Black Hills National Forest,USA

• 1. Conservation biologists need tools that can utilize existing data to identify areas with the appropriate habitat for species of conservation concern. Regression models that predict suitable habitat from geospatial data are such a tool. Multiple logistic regression models developed from existing geospatial data were used to identify large‐scale stream characteristics associated with the occurrence of mountain suckers (Catostomus platyrhynchus), a species of conservation concern, in the Black Hills National Forest, South Dakota and Wyoming, USA.
• 2. Stream permanence, stream slope, stream order, and elevation interacted in complex ways to influence the occurrence of mountain suckers. Mountain suckers were more likely to be present in perennial streams, and in larger, higher gradient streams at higher elevations but in smaller, lower gradient streams at lower elevations.
• 3. Applying the logistic regression model to all streams provided a way to identify streams in the Black Hills National Forest most likely to have mountain suckers present. These types of models and predictions can be used to prioritize areas that should be surveyed to locate additional populations, identify stream segments within catchments for population monitoring, aid managers in assessing whether proposed forest management will potentially have impacts on fish populations, and identify streams most suitable for stream rehabilitation and conservation or translocation efforts.
• 4. When the effect of large brown trout (Salmo trutta) was added to the best model of abiotic factors, it had a negative effect on the occurrence of mountain suckers. Negative effects of brown trout on the mountain sucker suggest that management of recreational trout fisheries needs to be balanced with mountain sucker conservation in the Black Hills. However, more spatially explicit information on brown trout abundance would allow managers to understand where the two species interact and where recreational fisheries need to be balanced with fish conservation.

Copyright © 2008 John Wiley & Sons, Ltd.     

Water diversion reduces abundance and survival of two Mediterranean cyprinids

Water flow is a fundamental characteristic required for the ecological integrity of stream ecosystems. However, populations of many freshwater fishes in the Mediterranean region are threatened by man‐induced drought due to water diversion. Mark‐recapture methodology is an effective tool for estimating fish abundance and survival probability, but it has been seldom used with Mediterranean freshwater fish. We tagged over 2,400 individuals of two threatened cyprinids (Mediterranean barbel Barbus meridionalis and Catalan chub Squalius laietanus) inhabiting an Iberian stream affected by water diversion, and used mark‐recapture methods to evaluate the effects of flow, temperature and depth on their apparent survival and abundance at hydrologically altered and perennial reaches. Based on estimates over the summer drying season, survival of Mediterranean barbel was more than six times higher in an upstream reach with permanent flow than a middle reach impacted by water diversion. Water depth was the most important habitat feature accounting for differences in survival, with both barbel and chub exhibiting higher survival and abundance at permanent sites farther downstream where flow had been restored and in an unaltered tributary. Our results show clear negative impacts of water diversion on fish populations. Both species, but particularly barbel, have life‐cycle characteristics that may allow populations to recover quickly if natural streamflow was restored by conserving water and reducing water diversion.     

Spawning periodicity and synchrony of bluehead chub (Nocomis leptocephalus) and a nest associate,yellowfin shiner (Notropis lutipinnis), across local streams

We studied daily spawning periodicity of a nest-building species, bluehead chub (Nocomis leptocephalus), and a nest associate, yellowfin shiner (Notropis lutipinnis), in three streams in the upper Piedmont region of South Carolina, USA. Field observations were conducted for 89 consecutive days in 2016 by recording the number of active nests and environmental variables. A total of 71 nests were located across study streams; bluhead chub and yellowfin shiner spawned between April and June. Spawning was observed periodically at intervals of 4–6 days within the same stream and across different streams, indicating broad-scale influences of the same environmental factors leading to synchrony. A generalized linear auto-regressive and moving average model showed that the periodic spawning pattern was likely caused by changes in water temperature, with effects of water level varying by stream. Specifically, spawning was triggered by a short-term (2-day) increase in water temperature and was observed under stable flow conditions (i.e. a lack of precipitation). This study showed that spawning periodicity of bluehead chub and yellowfin shiner tracked daily variation in in-stream conditions, indicating that their reproduction might be affected by anthropogenic disturbances that affect the rate of change in thermal and flow regimes at the fine temporal scale (e.g. hydroelectric dams and impervious cover).     

Stream bed organic carbon and biotic integrity

• 1. Allochthonous carbon is the basis of the detrital food web in low‐order, warmwater stream ecosystems, and stream‐bed sediments typically function as carbon reservoirs. Many of the same factors that govern carbon input and storage to streams (e.g. riparian vegetation, large wood, heterogeneous boundaries) have also been identified as key attributes of stream fish habitat.
• 2. Effects of channel incision on sand‐bed stream carbon reservoirs and indices of biological integrity (IBIs) based on fish collections were examined for four streams exhibiting a range of incisement in northern Mississippi. Observed mean C concentrations (mass percentage) ranged from 0.24±0.36% for a non‐incised stream to only 0.01±0.02% for a severely incised channel, and were not correlated with large wood (LW) density, perhaps because LW density at one site was elevated by a habitat rehabilitation project and at another site by accelerated inputs from incision‐related riparian tree fall. Fish IBI was positively correlated with bed C (r=0.70, p=0.003), and IBIs for reference streams were more than 50% greater than those computed for the most severely degraded sites.
• 3. More testing is needed to determine the efficacy of stream bed C as an indicator, but its importance to warmwater stream ecosystems, and the importance of covarying physical and hydrologic conditions seems evident.

Published in 2008 by John Wiley & Sons, Ltd.     

Biological effectiveness of an inexpensive nature‐like fishway for passage of warmwater fish in a small Ontario stream

Few studies have been conducted to evaluate the effectiveness of nature‐like fishways, particularly in low gradient warmwater streams with diverse fish communities. We evaluated a nature‐like fishway that was installed to facilitate upstream passage at a low head dam on Indian Creek near Spencerville, Ontario, Canada. A passive integrated transponder (PIT) array was used to quantify attraction and passage efficiency for 391 PIT tagged warmwater fish, represented by seven species. Attraction efficiency for the three most common species, common shiner (Luxilus cornutus), creek chub (Semotilus atromaculatus) and white sucker (Catostomus commersonii), was 63.3%, 83.7% and 65.6%, respectively, and passage efficiencies were 5.1%, 38.4% and 25%, respectively. Creek chub were able to locate the fishway in less time than white sucker and common shiner; however, took longer to successfully pass. Manipulation of creek chub release locations was used to separate issues of attraction and passage and revealed that passage efficiency was highest (76.2%) for those released within the fishway and intermediate for those released at the entrance (42.1%). This multispecies fishway improved stream connectivity, but additional work is needed to fine tune its configuration. Similar projects that engage stakeholders in nature‐like fishway construction are a promising approach for the thousands of small dams that occur on low gradient streams around the globe, but those studies should incorporate a biological evaluation to ensure that attraction and passage efficiency are optimised.     

Fish–habitat relationships and fish conservation in small coastal streams in southern Spain

• 1. Studies dealing with the fish fauna of coastal streams are scarce in the scientific literature, particularly those from Mediterranean climates. Owing to their small size, these systems suffer extreme seasonal fluctuations, following the typical Mediterranean flood–drought cycle and leading to a high risk of extinction to freshwater fish.
• 2. This work analyses fish distribution in 14 stream stretches belonging to eight basins in the northern sector of the Strait of Gibraltar (southern Spain). Fish–habitat relationships were studied through multivariate ordination techniques at two scales: basin and stretch.
• 3. A principal components analysis clearly discriminated larger and more sinuous basins from smaller and steeper ones. This ordination was related to the non‐migratory freshwater fish species richness and to the total number of fish species present in the middle reaches of each basin.
• 4. The main sources of variation in community composition and habitat characteristics in the different stretches were related to a clear upstream–downstream gradient, along which total species richness increased.
• 5. These small coastal basins are inhabited by two highly endangered species, Andalusian toothcarp (Aphanius baeticus) and Iberian chub (Squalius pyrenaicus), and have similar or higher overall freshwater species richness than larger adjacent basins. The near absences of flow regulation and introduced species make these streams one of the few types of Iberian aquatic system where unaltered fish–habitat relationships can be studied.

Copyright © 2005 John Wiley & Sons, Ltd.