Bay-scale population structure in coastal Atlantic cod in Labrador and Newfoundland, Canada

Polymorphisms at five microsatellite DNA loci provide evidence that Atlantic cod Gadus morhua inhabiting Gilbert Bay, Labrador are genetically distinguishable from offshore cod on the north-east Newfoundland shelf and from inshore cod in Trinity Bay, Newfoundland. Antifreeze activity in the blood suggests that Gilbert Bay cod overwinter within the Bay. Gilbert Bay cod are also smaller (weight and length) for their age and consequently less fecund for their age, than cod elsewhere within the northern cod complex. The productivity and recruitment potential of coastal cod off Labrador may thus be much lower than that of offshore northern cod or of inshore cod farther south, implying that a more conservative management strategy may be required for cod from coastal Labrador than traditionally practised for northern cod inhabiting less harsh environments. Relatively high F _ST and R _ST measures of population structure suggest that important barriers to gene flow exist among five components that include two inshore (Gilbert and Trinity Bay) and three offshore cod aggregations on the north-east Newfoundland Shelf and the Grand Bank. D _A and D _SW estimates of genetic distance that involve Gilbert Bay cod are approximately three- and 10–fold larger, respectively, than estimates not involving Gilbert Bay cod. The differences between inshore cod from Gilbert Bay and Trinity Bay raise the possibility that other genetically distinguishable coastal populations may exist, or may have existed prior to the northern cod fishery collapse. Harvesting strategies for northern cod should recognize the existence of genetic diversity between inshore and offshore components as well as among coastal components.     

Habitat use and early winter movements by juvenile Atlantic cod in a coastal area of Newfoundland

Acoustic telemetry was used to monitor the movements and landscape scale habitat use of age 2–3 year juvenile Atlantic cod Gadus morhua in Newman Sound, a coastal fjord of Newfoundland, during late autumn and early winter (24 October 1999 to 22 January 2000). Substratum, bathymetric relief and depth use were studied to determine if it differed from the pattern expected given an absence of selectivity (habitat use proportional to habitat availability). Prior to winter migrations, most Atlantic cod maintained small home ranges (0·5–33·4 ha, median = 2·1 ha) although a few individuals moved more widely. No relationship between total length (L_T) and home range size was detected. In Inner Newman Sound, Atlantic cod occupied depths of 10–29 m more than expected given availability, while depths of 0–9 and 40–59 m were underutilized. No significant relationship between depth and L_T was detected. Areas of medium (5–10%) or high (>10%) bathymetric relief and boulder or kelp habitats were used significantly more than expected given the availability of these habitats. Sand and eelgrass substrata were underutilized given availability, although many Atlantic cod used sandy‐bottomed areas to some degree. Flexibility in habitat use by the individuals that were studied suggested reduced predation risk relative to younger conspecifics. Winter migrations to deeper water beyond Newman Sound began in mid‐November, coinciding with the disappearance of the thermocline, and continued until 27 December. Approximately 30% of monitored individuals did not migrate and maintained their home ranges into the winter season. No significant differences in L_T between migrating and resident groups were detected, however, the condition of migrating fish was significantly higher than in resident fish. This finding supports the theory that feeding history plays a role in the decision to undertake migration.     

Microzooplankton herbivory and bacterivory in Newfoundland coastal waters during spring, summer and winter

Grazing by microzooplankton on autotrophic and heterotrophicpicoplankton as well as >0.7 µm phytoplankton (as measuredby chlorophyll a) was quantified during July, August, October,January and April in the surface layer of Logy Bay, Newfoundland(47°38'14'N, 52°39'36'W). Rates of growth and grazingmortality of bacteria, Synechococcus and >0.7 µm phytoplanktonwere measured using the sea water dilution technique. Microzooplanktoningested 83–184, 96–366 and 64–118% of bacterial,Synechococcus and >0.7 µm phytoplankton daily potentialproduction, respectively and 34–111, 25–30 and 16–131%of bacterial, Synechococcus and >0.7 µm phytoplanktonstanding stocks, respectively. The trends in prey net growthrates followed the seasonal cycles of prey biomass, suggestingthat microzooplankton are important grazers in Newfoundlandcoastal waters. Ingestion was lowest during January and October(~2 µg C l^–1 day^–1) and highest in August(~20 µg C l^–1 day^–1). Aside from April when>0.7 µm phytoplankton represented the majority (~80%)of carbon ingested, bacterioplankton and <1 µm phytoplanktonrepresented most of the carbon ingested (~40–100%). Althoughmicrozooplankton have here-to-fore been unrecognized as an importantgrazer population in Newfoundland coastal waters, these resultssuggest that they play an important role in carbon flow withinthe pelagic food web, even at low temperatures in Logy Bay.     

The timing of spawning in capelin (Mallotus villosus Müller) at a coastal location in eastern Newfoundland

We tested three hypotheses concerning the timing of spawning for a circumpolar species, capelin (Mallotus villosus), for which timing of larval emergence is known to be synchronized by physical conditions. The first hypothesis, developed from previous studies, was that spawning would be synchronized by upwelling events. Initial results from Middle Cove Beach in eastern Newfoundland indicated that spawning was not synchronized with upwelling. We next hypothesized that spawning was a function of several environmental variables. Results from logistic regression indicated that neither single-factor nor multi-factor models could explain the timing of spawning. Single variables could predict spawning in some years but no variable could reliably predict the time of spawning year after year. Finally, we hypothesized that the probability of spawning increased as a set of significant variables approached preferred levels. For capelin at Middle Cove, the set of variables that influence capelin spawning were identified as wave height, sea surface roughness and capelin abundance in the water. Thus only a combination of variables explained the timing of spawning for capelin. Preferred conditions for capelin spawning were wave heights less than 20 cm at the beach, a sea surface with a slight ripple, and an intermediate rank abundance of capelin in the water corresponding to hundreds to thousands of individuals. Capelin abundance alone was not a useful predictor. During the course of the study we observed a shift in the dates that capelin arrived and spawned at the beach. During 1987–1990 capelin spawned at Middle Cove Beach during June, but in more recent years (1991–1993) capelin did not arrive or spawn until July.     

Effects of growth rates on the otolith increments deposition rate in capelin larvae (Mallotus villosus)

Otolith microstructure analysis was applied to known age capelin larvae (Mallotus villosus) in order to examine the formation of daily increments. In two validation experiments, newly hatched yolk sac larvae were stocked into eight 10 m³ plastic bags where environmental conditions were kept as natural as possible. The bags were terminated after 35-79 days, the surviving larvae were collected and the otoliths were analysed. Survival in the bags varied between 39 - 71% with average individual length growth rates of 0.25 mm day^- 1. The ages of most larvae were underestimated and the accuracy in age estimation was generally low. Highest accuracy was found for fast growing larvae. On average, the larvae started to form increments about 12 days after hatching, and the increment width increased with age and/or length of the larvae. Larvae showing low body growth rates had fast otolith growth relative to body length.     

Biomanipulation: a review of biological control measures in eutrophic waters and the potential for Murray cod Maccullochella peelii peelii to promote water quality in temperate Australia

Biomanipulation is a method of controlling algal blooms in eutrophic freshwater ecosystems. The most common approach has been to enhance herbivores through a reduction of planktivorous fish and introduction of piscivorous fish. The method was originally intended to reduce grazing pressure on zooplankton, thereby increasing grazing pressure on phytoplankton to increase water clarity and promote the growth of aquatic macrophytes. Biomanipulation has received considerable attention since it was proposed in 1975 where innovative approaches and explanations of the processes have been developed. Although many successful biomanipulation exercises have been conducted internationally, it has received comparatively little attention in the Southern Hemisphere and has not been trialled in the southern temperate climate of South Australia. This is a review to speculate upon the criteria for and against the application of biomanipulation in southern temperate Australia using the native species Murray cod (Maccullochella peelii peelii) and to suggest future research.     

Hypoxic avoidance behaviour in cod (Gadus morhua L.): The effect of temperature and haemoglobin genotype

Hypoxia can influence fish growth, survival and on larger scales, population structure. These effects may be influenced by water temperature, and may vary intra-specifically with genotype. In Atlantic cod (Gadus morhua L.), the two haemoglobin homozygotes (Hb-I?11 and Hb-I?22) vary in oxygen affinity at different temperatures, which is thought to correspond to variation in hypoxia tolerance. We therefore tested if hypoxic avoidance behaviour in cod 1) depends on ambient temperature and 2) is modified by haemoglobin genotype. In a laminar flow choice box, we subjected juvenile cod to an initial phase of non-escapable hypoxia, and a subsequent recovery phase, where one habitat was kept at 20% O₂ saturation while the other was raised in steps to full saturation. The experiment was performed at 5 and 15 °C with Hb-I?11 and Hb-I?22 cod. Cod responded to inescapable hypoxia by reducing their overall swimming speed and then, at the initial levels of the recovery phase, avoiding the most hypoxic habitat, irrespective of temperature or genotype. Fish recovered quickly as O₂ levels increased, as evidenced by increased swimming speed and time spent in the most hypoxic habitat. The avoidance response depended strongly on temperature: the relative reduction in speed and avoidance of the most hypoxic habitat was more pronounced at 15 than at 5 °C. During the recovery phase, stressed fish initially maintained a higher swimming speed in the most hypoxic habitat. However, as O₂ increased, swimming speed in both habitats converged. This point of convergence occurred at a lower O₂ saturation at 5 °C. Fish ventilation rate in inescapable hypoxia was also higher at 15 °C. Haemoglobin genotype did not influence either ventilation rates or the nature of the hypoxic avoidance response at either temperature, but Hb-I?11 cod swam faster than Hb-I?22 cod in normoxia at 15 °C. Our results indicate that increased temperature limits the ability of cod of both haemoglobin genotypes to exploit hypoxic habitats. This may have negative future consequences for coastal cod stocks in light of increasing global temperatures and eutrophication in coastal waters.     

Comparison of metazoan parasites of Atlantic cod, Gadus morhua, from three geographical areas of coastal Newfoundland

This study compared metazoan parasites in the digestive tract of Atlantic cod, Gadus morhua , captured from 3 geographical areas off the northeastern (NE), southeastern (SE), and southwestern (SW) coasts of Newfoundland. Samples were obtained by line trawl and frozen after capture, and the digestive tract was subsequently examined for metazoan parasites following conventional parasitological methods. Mean abundance of nematodes, but not the trematodes, and an acanthocephalan was significantly greater in cod taken from the NE than from the SE or SW areas, which were generally similar. Four species of trematodes, 3 nematodes, and an acanthocephalan, Echinorhynchus gadi , were the dominant parasites observed. Differences in mean abundance among samples from different areas might be related to the types of prey consumed rather than to environmental factors. The dominant parasites were probably acquired by cod on the NE coast after feeding on capelin, Mallotus villosus , which serve as paratenic hosts for several helminth species. Previous studies on tagging, feeding, and prevalence of 3 parasites have revealed differences in the populations of cod from the NE than from the SW or SE areas. Results from the present study, indicating geographical differences in parasite mean abundance and prevalence from the digestive tract of Atlantic cod between SW and NE areas, support the view of distinct coastal cod stocks off Newfoundland.     

Spatial ecology of coastal Atlantic cod Gadus morhua associated with parasite load

Acoustic tags and receivers were used to investigate the spatial ecology of coastal Atlantic cod Gadus morhua (n = 32, mean fork length: 50 cm, range: 33–80 cm) on the Norwegian Skagerrak coast in 2012. Monthly home ranges (HR), swimming activity and depth use varied considerably among individuals and through the months of June, July and August. HR sizes for the period ranged from 0·25 to 5·20 km² (mean = 2·30 km²). Two thirds of the tagged G. morhua were infected with black spot disease Cryptocotyle lingua parasites; these fish had larger HRs and occupied deeper water compared with non‐infected fish. The infected fish also tended to be more active in terms of horizontal swimming. From an ecological and evolutionary perspective, any environmental change that modifies G. morhua behaviour may therefore also alter the parasite load of the population, and its conservation and fishery status.     

Detrimental impacts of the dinoflagellate Karenia mikimotoi in Fujian coastal waters on typical marine organisms

Blooms of the toxic dinoflagellate Karenia mikimotoi (K. mikimotoi) have occurred frequently in the East China Sea in recent decades and were responsible for massive mortalities of abalones in Fujian coastal areas in 2012, however, little is known about the effects of these blooms on other marine organisms. In this study, the toxic effects and the possible mechanisms of toxicity of K. mikimotoi from Fujian coastal waters on typical marine organisms at different trophic levels, including zooplankton (Brachionus plicatilis, Artemia salina, Calanus sinicus, and Neomysis awatschensis) and aquaculture species (Penaeus vannamei and Scophthalmus maximus) were investigated. At a bloom density of 3 × 10⁴ cells/mL, the Fujian strain of K. mikimotoi significantly affected the tested organisms, which had mortality rates at 96 h of 100, 23, 20, 97, 33, and 53%, respectively. Moreover, the intact cell suspension was toxic to all tested species, whereas cell-free culture and the ruptured cell suspension had no significant effects on the tested organisms. Possible mechanisms for this toxic effect, including reactive oxygen species (ROS) and hemolytic toxins, were evaluated. For K. mikimotoi, 0.014 ± 0.004 OD/(10⁴ cells) superoxide (O₂⁻) and 3.00 ± 0.00 nmol/(10⁴ cells) hydrogen peroxide (H₂O₂) were measured, but hydrogen peroxide did not affect rotifers at that concentration, and rotifers were not protected from the lethal effects of K. mikimotoi when the enzymes superoxide dismutase and catalase were added to counteract the ROS. The lipophilic extract of K. mikimotoi had a hemolytic effect on rabbit erythrocytes but exhibited no significant toxicity. These results suggest that this strain of K. mikimotoi can have detrimental effects on several typical marine organisms and that its toxicity may be associated with intact cells but is not related to ROS or hemolytic toxins.     

Prevalence and influence of Loma branchialis (Microspora) on growth and mortality in Atlantic cod (Gadus morhua) in coastal Newfoundland

A study was conducted to determine the prevalence, geographical distribution, and effects of a microsporan parasite, Loma branchialis, in Atlantic cod in coastal Newfoundland. The parasite was identified microscopically as opaque, ovoid xenomas, primarily in the gills, heart, and spleen. Although widely distributed in young fish inhabiting 7 coastal localities, prevalence was 1-7% in general, <0.01% in older and large fish, but 78% in market-size cod from a commercial farm. Some of the latter fish were emaciated, and approximately 2 mo after the parasite was detected, 63% succumbed with a massive infection. Condition factor and blood values were significantly lower than those in reference fish. An experimental study conducted over 2 yr revealed that mass gained and condition factor were significantly lower in infected cod than in controls at the termination of the study. Feed consumption, mass gained, feed conversion efficiency, and condition factor also were significantly lower in another group of infected cod of marketable size studied over 12 wk. Xenomas also were observed in the heart and gills of year class II cod reared in a hatchery. Loma branchialis is considered to be a potential pathogen in both hatchery-reared and net pen-cultured cod in Newfoundland.     

Genotoxicological studies in aquatic organisms: an overview

Substantial progress has been made in the lat two decades to evaluate the impact of physical and chemical genotoxins in aquatic organisms. This overview (a) summarises the major high lights in this stimulating area of research, (b) compares the developments in this field with the developments in mammalian genotoxicological studies, where appropriate, (c) introduces 18 different articles presented in this special issue of Mutation Research in the backdrop of main advances and , (d) hypothesises on future directions of research in this exciting field.     

Molecular typing and identification of Bdellovibrio-and-like organisms isolated from seawater shrimp ponds and adjacent coastal waters

Aims:  To apply and compare two PCR-based methods for typing saltwater Bdellovibrio- and-like organisms (BALOs) and to understand ecological and phylogenetic aspects of the BALOs isolated from shrimp mariculture systems.
Methods and Results:  Using double-layer agar technique, the numbers of culturable BALOs that lyse Vibrio alginolyticus were found to be 10–10³ PFU ml⁻¹ in the surface water samples. A total of 130 BALOs isolates were differentiated into five phylotypes by denaturing gradient gel electrophoresis targeting the 16S rDNA V3 region and four phylotypes by amplified rDNA restriction analysis of the Bacteriovoracaceae -specific 16S rDNA fragment respectively. Phylogenetic analysis of representative isolates showed that all of them were identified as Bacteriovorax spp., but affiliated with four different clusters in the family Bacteriovoracaceae.
Conclusions:  The two PCR-based methods both can be chosen to rapidly type the saltwater BALOs at cluster level. And the relatively large numbers of BALOs with various phylotypes recovered from the same habitats suggested that these predators might play important ecological role in shrimp mariculture environments.
Significance and Impact of the Study:  We proposed two effective methods to distinguish rapidly large numbers of BALOs isolates and our results would be helpful to understand the diversity and function of BALOs in mariculture environments.     

Facultative semelparity in capelin Mallotus villosus (Osmeridae)-an experimental test of a life history phenomenon in a sub-arctic fish

Two alternative reproductive modes are present in fishes and reflect the age-specific mortality encountered through ontogenesis. Life-history hypotheses suggest that semelparity (i.e. death after a single reproductive event) evolves when the ratio of juvenile to adult survival is relatively high. Conversely, a relatively low ratio of juvenile to adult survival will favour iteroparity (i.e. death after two or more reproductive events). Fisheries management associates capelin (Mallotus villosus) spawning with mass mortality and semelparity even though life history models developed for this species suggest that females may follow an iteroparous trajectory. Capelin may spawn either inter-tidally on the beach or offshore in deeper, ocean waters but post-spawning survival and potential iteroparity has been notoriously difficult to assess in natural populations. Through a series of aquarium experiments we tested post-spawning survivability in a beach spawning and an ocean spawning population. The findings demonstrate that capelin which spawn offshore are absolute semelparous (death of both genders) while beach spawning capelin are iteroparous irrespective of sex. Beach spawning capelin regenerated ripe gonads from one spawning season to the next and provides the first conclusive evidence that capelin is physiologically capable of an iteroparous reproductive mode. The potential physical and biological processes which generate certain reproductive patterns in capelin are summarized and discussed in relation to life history hypotheses. We suggest that capelin is a facultative semelparous species in which dynamic changes within the semelparity-iteroparity continuum may occur as a result of subtle interactions between the spawning habitat, physical forcing, and predatory pressure.     

Selectivity of fishing gears used in the Baltic Sea cod fishery

The Baltic cod (Gadus morhua) plays a very significant role in the Baltic Sea ecosystem being the major fish top predator and the most important commercial species for the Baltic Sea fishing industry. Consequently the management and understanding of the exploitation pattern of the stock is of major importance. Technical regulations, improving the selectivity of cod, have been a major management strategy and the Baltic Sea is likely to be the area where most fishing gear selectivity studies, focussing on size selectivity, have been conducted over time. The methodology for conducting and analysing selectivity data has been significantly improved in recent years. The subject is reviewed since the choice of methodology can have a significant effect on the interpretation of the outcome of selectivity experiments. Factors affecting the selectivity of trawl and gill nets are considered. Alternative ways to improve the size and species selectivity of trawls using selective devices are reviewed. Selectivity parameters from available literature are listed and the correlations of selectivity parameters to the mesh size for different gears are estimated. The historical legislation on selectivity is reviewed and the expected selectivity for trawls is estimated. Management considerations concerning the mortality of escaping and discarded fish and wider management impacts have to be considered if improving selectivity. The review is ended by conclusions including reflections on needed research in the future.     

Enzymatic hydrolysis of cod (Gadus morhua) by-products: Optimization of yield and properties of lipid and protein fractions

The main products of hydrolysis of fish by-products are hydrolysed protein and oil. The aim of this work was to study the effect of initial heat inactivation of endogenous enzymes, addition of water prior to hydrolysis, use of different commercial enzymes and combination of enzymes on the yield and purity of the protein and oil fractions after enzymatic hydrolysis of cod by-products. This study was designed to examine how all these factors were effective for destroying protein–lipid complexes in order to obtain pure oil and protein fractions and reduce the insoluble fraction.

Initial heating of raw material changed both raw material properties and inactivated endogenous enzymes thereby influencing the following hydrolysis. High amount of lipids in raw material combined with initial heating caused formation of protein–lipid complexes which was found in all protein containing fractions. The main constituents of the lipids in the complexes were phospholipids and other polar lipids. Insoluble protein–lipid complexes formed lead to increased amount of sludge, reduced FPH yield and high amount of lipids in FPH. The highest amount of separated oil was obtained in the experiments after initial heating without added water. These treatments also reduce amount of emulsion, which is not a desirable product after hydrolysis. Initial heating caused denaturation of protein, which decreased their emulsifying properties.

Results showed that it is not possible to obtain all desirable quality indicators such as: maximum oil and FPH yield, minimum emulsion and sludge yield and the highest protein recovery in FPH with the lowest amount of lipids in FPH fraction by using only one hydrolysis process. Therefore, the aim and requirements for the final products should be prioritised and defined very clearly before the process is designed taking into account the composition of raw material. Hydrolysis of unheated raw material with Alcalase and addition of water was the best compromise taking into account the mentioned quality indicators.     

环梅山岛海域春季浮游古菌群落空间分布特征研究

[目的]海洋浮游古菌是生物地球化学循环的关键驱动者,但其在近岸海域的水平空间分布特征还未被充分了解.本研究以与陆地紧密相连的环梅山岛海域为例研究浮游古菌在海陆过渡带的水平分布模式.[方法]利用16S rRNA基因扩增子测序,以期从优势类群分布、群落组成变化和物种共现模式3个层面揭示梅山湾潟湖区和临近海域春季浮游古菌的空...     

Ontogeny of redox regulation in Atlantic cod (Gadus morhua) larvae

The reduction potential of a cell is related to its fate. Proliferating cells are more reduced than those that are differentiating, whereas apoptotic cells are generally the most oxidized. Glutathione is considered the most important cellular redox buffer and the average reduction potential (E_h) of a cell or organism can be calculated from the concentrations of glutathione (GSH) and glutathione disulfide (GSSG). In this study, triplicate groups of cod larvae at various stages of development (3 to 63 days post-hatch; dph) were sampled for analyses of GSSG/2GSH concentrations, together with activities of antioxidant enzymes and expression of genes encoding proteins involved in redox metabolism. The concentration of total GSH (GSH+GSSG) increased from 610±100 to 1260±150 μmol/kg between 7 and 14 dph and was then constant until 49 dph, after which it decreased to 810±100 μmol/kg by 63 dph. The 14- to 49-dph period, when total GSH concentrations were stable, coincides with the proposed period of metamorphosis in cod larvae. The concentration of GSSG comprised approximately 1% of the total GSH concentration and was stable throughout the sampling series. This resulted in a decreasing E_h from −239±1 to −262±7 mV between 7 and 14 dph, after which it remained constant until 63 dph. The changes in GSH and E_h were accompanied by changes in the expression of several genes involved in redox balance and signaling, as well as changes in activities of antioxidant enzymes, with the most dynamic responses occurring in the early phase of cod larval development. It is hypothesized that metamorphosis in cod larvae starts with the onset of mosaic hyperplasia in the skeletal muscle at approximately 20 dph (6.8 mm standard length (SL)) and ends with differentiation of the stomach and disappearance of the larval finfold at 40 to 50 dph (10–15 mm SL). Thus, metamorphosis in cod larvae seems to coincide with high and stable total concentrations of GSH.