Diploid and tetraploid progenitors of wheat are valuable sources of resistance to the root lesion nematode <Emphasis Type="Italic">Pratylenchus</Emphasis><Emphasis Type="Italic">thornei</Emphasis>

The root lesion nematode Pratylenchus thornei is widely distributed in Australian wheat (Triticum aestivum) producing regions and can reduce yield by more than 50%, costing the industry AU$50 M/year. Genetic resistance is the most effective form of management but no commercial cultivars are resistant (R) and the best parental lines are only moderately R. The wild relatives of wheat have evolved in P. thornei-infested soil for millennia and may have superior levels of resistance that can be transferred to commercial wheats. To evaluate this hypothesis, a collection of 251 accessions of wheat and related species was tested for resistance to P. thornei under controlled conditions in glasshouse pot experiments over two consecutive years. Diploid accessions were more R than tetraploid accessions which proved more R than hexaploid accessions. Of the diploid accessions, 11 (52%) Aegilops speltoides (S-[B]-genome), 10 (43%) Triticum monococcum (A ^m -genome) and 5 (24%) Triticum urartu (A ^u -genome) accessions were R. One tetraploid accession (Triticum dicoccoides) was R. This establishes for the first time that P. thornei resistance is located on the A-genome and confirms resistance on the B-genome. Since previous research has shown that the moderate levels of P. thornei resistance in hexaploid wheat are dose-dependent, additive and located on the B and D-genomes, it would seem efficient to target A-genome resistance for introduction to hexaploid lines through direct crossing, using durum wheat as a bridging species and/or through the development of amphiploids. This would allow resistances from each genome to be combined to generate a higher level of resistance than is currently available in hexaploid wheat.     

Overcoming unilateral incompatibility in crosses with wild allotetraploid potato species <Emphasis Type="Italic">Solanum stoloniferum</Emphasis> Schldtl. &amp; Bouchet

The germplasm of valuable for breeding wild allotetraploid potato species Solanum stoloniferum is rarely used because of pre- and postzygotic reproductive barriers with cultivated potatoes. One of the factors that complicate crosses between S. stoloniferum and S. tuberosum is unilateral incompatibility (UI). Here, we present the results of application of S. verrucosum and S _v S _v -lines for overcoming UI in crosses with S. stoloniferum and of generating male fertile hybrids derived from this species. S _v S _v -lines are F2 S. tuberosum dihaploid × S. verrucosum that are male fertile and have D/γ-type cytoplasm. Since they are homozygous for S _v gene from S. verrucosum, they were expected to have the same ability for elimination of prezygotic incompatibility as this species. Three accessions of S. verrucosum and seven S _v S _v -lines were pollinated by 26 accessions of S. stoloniferum. The crosses with S. verrucosum failed or had low efficacy (1.5–2.4 seeds per pollination). On the other hand, use of S _v S _v -lines was more efficient: 15.8 seeds per pollination. In spite of low percentage of germination (1.9%), 40 seedlings of interspecific hybrids were produced. The experiment on hybridization between S _v S _v -lines and S. stoloniferum has been reproduced with the accession PI 205522 of the wild species, which had DNA markers of PVY and LB resistance genes and W/γ cytoplasm: 950 hybrid seeds and 12 viable seedlings were produced. The genome of the seedlings was doubled by colchicine treatment, which generated hexaploids that formed highly fertile pollen and set seeds from self-pollination. We were able to cross them as females with the variety Katahdin.     

Overcoming obstacles to interspecific hybridization between <Emphasis Type="Italic">Gossypium hirsutum</Emphasis> and <Emphasis Type="Italic">G. turneri</Emphasis>

Gossypium turneri, a wild cotton species (2n = 2X = 26, D₁₀D₁₀) originating from Mexico, possesses invaluable characteristics unavailable in the cultivated tetraploid cotton gene pool, such as caducous involucels at anthesis, resistance to insects and tolerance to abiotic stresses. However, transferring desired characteristics from wild species into cultivated cotton is often fraught with diverse obstacles. Here, Gossypium hirsutum (as the maternal parent) and G. turneri were crossed in the Hainan Province of China, and the obtained hybrid seeds (2n = 3X = 39, ADD₁₀) were treated with 0.075% colchicine solution for 48 h to double the chromosome complement in order to overcome triploid F₁ sterility and to generate a fertile hexaploid. Chromosome doubling was successful in four individuals. However, the new synthetic hexaploids derived from these individuals were still highly sterile, and no seeds were generated by selfing or crossing. Therefore, an embryo rescue technique was employed in an attempt to produce progenies from the new synthetic hexaploids. Consequently, a total of six large embryos were obtained on MSB2K medium supplemented with 0.5 mg l^?1 KIN and 250 mg l^?1 CH using ovules from backcrossing that were 3 days post-anthesis. Four grafted surviving seedlings were confirmed to be the progenies (pentaploids) of the new synthetic hexaploids using cytological observations and molecular markers. Eight putative fertile individuals derived from backcrossing the above pentaploids were confirmed using SSR markers and generated an abundance of normal seeds. This research lays a foundation for transferring desirable characteristics from G. turneri into upland cotton.     

Inheritance of type IV glandular trichome density and its association with whitefly resistance from <Emphasis Type="Italic">Solanum galapagense</Emphasis> accession LA1401

Tomato is affected by a large number of arthropod pests, among which the whitefly (Bemisia tabaci) is considered to be one of the most destructive. Several accessions of the wild species of Solanum galapagense, including accession LA1401, are considered resistant to whitefly (B. tabaci). This resistance has been associated with the presence of type IV glandular trichomes on the leaf surface. Our research aimed to study the inheritance of type IV glandular trichome density and its association with resistance to whitefly (B. tabaci biotype B) in populations derived from the interspecific cross Solanum lycopersicum × S. galapagense ‘LA1401.’ High estimates for both broad-sense and narrow-sense heritabilities of type IV glandular trichome densities suggest that inheritance of this trait is not complex. Whitefly resistance was associated with high density of type IV glandular trichomes. F₂ (S. galapagense × S. lycopersicum) population plants selected for the highest densities of type IV glandular trichomes showed similar levels of resistance to those found in the donor of resistance LA1401.     

Selection of cassava accessions with multiple resistance to pathogens associated with root rot disease

Cassava root rot disease (CRRD) severely affects productivity in several countries. The objective of this study was to estimate genetic parameters and to identify multiple resistance sources against pathogens associated with CRRD. The symptoms caused by Fusarium spp., Phytophthora spp., and Botryosphaeriaceae species in peel and pulp from the roots were evaluated in 277 accessions using a whole tuberous root inoculation method. The resistance data were obtained by REML/BLUP (restricted maximum likelihood/best linear unbiased predictor). The classic selection index (CI), multiplicative (MI), and sum of ranks (SRI) were used to identify the accessions with multiple resistance. For all pathogens, the environmental variance (\(\sigma_{e}^{2}\)) was the most important component. Individual heritability \(\left( {h_{g}^{2} } \right)\) was of low magnitude for resistance to most pathogens (0.16 ± 0.02—peel and 0.31 ± 0.03—pulp for Fusarium spp.; 0.26 ± 0.03—peel and 0.30 ± 0.03—pulp for Phytophthora spp.; and 0.28 ± 0.03—peel and 0.27 ± 0.03—pulp for Botryosphaereacea species). The distribution of CRRD symptoms indicated the presence of quantitative inheritance. The direct selection of the 15 more resistant accessions based on the genotypic predicted values result in high reductions of disease (>50%). However, there was a low matching rate of the most resistant accessions for each pathogen and the different parts of the tuberous roots (peel and pulp). The CI and MI were the most promising compared to the SRI to ensure high and balanced resistance for each pathogen. Understanding the genetic basis of resistance to CRRD and the identification of sources with multiple resistance may be useful in various management strategies to control the disease.     

Evidence of a partial reproductive barrier between wild and cultivated pearl millets (Pennisetum glaucum)

Summary The occurrence of seed malformation in association with reduced thousand grain weight and germination ability has been observed in crosses between cultivated female plants and wild male plants. A survey of 16 cultivated accessions (P. glaucum subsp. glaucum) and 11 wild accessions (P. glaucum subsp. monodii) ranging over the whole species diversity showed this postzygotic incompatibility was general, but its intensity varied greatly with the cultivated female accession used and very little with the wild male parent origin. About 15% of the 123 cultivated x wild crosses observed gave normal seeds. Seed malformation has never been observed in crosses between cultivated accessions and appeared independent of genetic distances between the parents. The reciprocal crosses between wild female plants and cultivated male plants gave normal-looking seeds with good germination but consistently reduced thousand grain weight. Both seed malformation and seed small size are an expression of a genetic imbalance. These slight reproductive barriers seem to have been built during the domestication process.Abbreviation ICRISAT International Crop Research Institute for the Semi-Arid Tropics     

The sporophytic self-incompatibility mating system is conserved in <Emphasis Type="Italic">Olea europaea</Emphasis> subsp. <Emphasis Type="Italic">cuspidata and O. e. europaea</Emphasis>

Fruit setting after self-pollination, crosses and free-pollination appears to be erratic in the cultivated olive tree [Olea europaea subsp europaea L. (O. e. europaea L.)] because of a lack of a suitable model to enable prediction of rates. The same lack of prediction also applies to the wild taxon Olea europaea subsp cuspidata (O. e. cuspidata). Because of their close phylogenetic relationships, we hypothesize that O. e. cuspidata and cultivated olive share the same self-incompatibility system. We used data recently published in a wide study involving four O. e. cuspidata accessions and four olive cultivars. Because the olive varieties have been deciphered for their S-allele pair, that infer determinants present in the stigma and pistil, and that coat the pollen, we deciphered the S-alleles carried by three of the O. e. cuspidata accessions. Data are too scarce and the number of accessions too small to speculate on the O. e. cuspidata genetic population structure. The working hypothesis is confirmed. This study and data from the Italian team will enable us to embark on a large-scale hybridization program between the two subsp. to obtain a wide range of progenies for screening for responses to cold, diseases and pests.     

Biochemical and physiological study of the firmness of table grape berries

Firmness is an essential quality parameter of table grapes (Vitis vinifera) for consumers, with grape bunches that contains soft berries less preferred, resulting in a reduction in the market price. The softening of grape berries has been commonly associated with cell walls, especially the disassembly of pectic polysaccharides. However, the process of berry softening is not completely understood. To investigate the softening process of grape berries, we compared the Thompson Seedless variety, which suffers significant economic losses due to fruit softening, and NN107, a new variety with a significantly higher level of berry firmness. The composition of the cell wall during the berry development of these two grape varieties was compared. NN107 berries had a greater amount of calcium and uronic acids in the cell wall material than Thompson Seedless grapes, suggesting a special role for calcium bridge formation in NN107. Additionally, polyacrylamide carbohydrate electrophoresis (PACE) analysis suggested differences between these varieties in pectin structure. Thompson Seedless grapes showed increased pectolyase hydrolysable site dynamics in the cell wall material and higher polygalacturonase activity than NN107. Immunohistochemistry focusing on the pectin structure confirmed the roles of both calcium bridge formation and cell wall integrity as they relate to a firmer grape berry phenotype.     

Genome-wide association study of yield components and fibre quality traits in a cotton germplasm diversity panel

A genome-wide association study (GWAS) was conducted on a diversity panel of 103 cotton accessions over three seasons to determine genetic contributions to a range of cotton yield components including fibre quality, plant architecture and stomatal conductance traits. The accessions covered breeding lines, released cultivars and some obsolete cultivars that contributed significantly to modern breeding pools. They were genotyped with Illumina’s CottonSNP63 K single nucleotide polymorphism (SNP) assay. Broad-sense heritability was low for yield component traits (\(h_{B}^{2}\) = 0.14–0.43), except for gin turnout and boll weight (\(h_{B}^{2}\)) = 0.74 and 0.59, respectively), and low to high for fibre quality traits (\(h_{B}^{2}\) = 0.26–0.89). Population structure analysis revealed extensive admixture and cryptic relatedness amongst the accessions. Genome-wide linkage disequilibrium (LD) analyses showed LD decayed, on average, within a physical distance of 5 Mbp and reduced to 2 Mbp at r ² ≥ 0.2, suggesting that few markers are necessary for association mapping in cotton. A mixed linear model accounting for population structure and cryptic relatedness identified 17 and 50 significant SNP associations for fibre length and micronaire, respectively. GWAS failed to detect significant associations in other traits, with the contribution of any single SNP to the phenotypic falling below 5%. This may be due to the low level of DNA polymorphism in cotton and/or insufficient resolution provided by the cotton SNP chip. Whole genome sequencing combined with whole genomic selection approaches that do not require prior knowledge about the effect or function of individual SNPs may be better suited than GWAS for trait dissection and prediction in cotton breeding.     

Screening for pollen tolerance to high temperatures in tomato

Among the abiotic stresses affecting plant reproduction, high temperature is one of the most prominent ones because it directly affects fruit set. So far, little attention has been paid to the investigation of the variation in high temperature tolerance among wild tomato (Solanum lycopersicum) germplasm. The objective of this study was to determine the tolerance of 17 different cultivated and wild tomato accessions to high temperature, using a pollen viability screening approach. Each of the 17 genotypes of tomato was analysed for their pollen quality under a 32 °C (day)/26 °C (night) regime. The total number of pollen per flower and the fraction of viable pollen were recorded. The number of pollen per flower varied between 35,547 and 109,490 whereas the fraction of viable pollen varied between 0.03 and 0.71. No correlation was found between these two traits. However, the combination of these traits could provide the best reproductive capability under high temperature. In this study, thermo-tolerant (LA2854, LA1478 and LA0417) as well as thermo-sensitive (LA1719, LA1580, and SWEET4) genotypes have been identified. Those genotypes can be used as novel genetic resources to get more insight into pollen thermo-tolerance mechanisms and be included in breeding programs.     

Development and trait evaluation of chromosome single-segment substitution lines of <Emphasis Type="Italic">O. meridionalis</Emphasis> in the background of <Emphasis Type="Italic">O. sativa</Emphasis>

O. meridionalis is a wild species belonging to AA genome in the Oryza genus, which has a lot of beneficial genes for improvement of cultivated rice. In the present study, 99 chromosome single-segment substitution lines (SSSLs) were developed carrying donor segments of O. meridionalis in the genetic background of an indica cultivar, Huajingxian 74 (HJX74). The total lengths of the 99 substituted segments in the SSSLs were 1580.16 cM, with an average length of 15.11 cM per substituted segment, covering 873.94 cM and 54.98% of O.meridionalis genome. Phenotypic investigations of the SSSLs showed that three SSSLs had red pericarp, awn and showed seed shattering, respectively, indicating that these genes of O. meridionalis responsible for these traits have been transferred to the SSSLs. And wide variations were observed in seven quantitative traits including heading date and yield-related traits in 82 SSSLs.At P ≤ 0.001, 77 SSSLs showed significant differences compared with HJX74 in at least one trait either in the fall of 2014 or spring of 2015, and a total of 28 stable QTLs were detected in 24 SSSLs in both seasons. These results suggest that the SSSLs library of O. meridionalis developed in this study offers a good germplasm platform for the identification and transformation of beneficial genes of O. meridionalis, and facilitates the conservation of gene resources of O. meridionalis in vivo for long periods.     

Genetic diversity and association mapping of forage quality in diverse bermudagrass accessions

Bermudagrass is a warm season grass widely cultivated for turf and fodder. Nonetheless, the grass has poor forage quality because animals that consume it fail to assimilate its organic matter efficiently. Thus, identification of the marker-trait association between simple sequence repeat (SSR) markers and forage-quality-related traits in diverse bermudagrass accessions would enable efficient selection of high forage quality bermudagrass cultivars. Association mapping of 8 forage-related-quality traits with 1474 markers was conducted in 60 diverse bermudagrass accessions from five geographical regions in China. Significant variations in eight phenotypic and physiological traits were observed among the 60 accessions. A total of 1474 alleles were amplified by 104 SSR primers. The average gene diversity and polymorphic information content for the study sample were 0.2097 and 0.1748 respectively. The clustering analysis suggested that geographic origin influenced genetic distances between accessions. A total of 76 markers significantly associated with traits at P < 0.01; 73 with a single trait and 3 with two traits each. Nevertheless, only 41 significant marker-trait associations (MTAs) were observed after Bonferroni test was separately conducted for each trait. Forty-one microsatellites had significant associations with 8 forage-quality-related traits. These markers provide a feasible means of genetically improving forage quality in bermudagrass after further authentication.     

Transgressive segregations for yield criteria in reciprocal interspecific crosses between <Emphasis Type="Italic">Cicer arietinum</Emphasis> L. and <Emphasis Type="Italic">C. reticulatum</Emphasis> Ladiz.

Wild Cicer species are considered to be more resistant for biotic and abiotic stresses than that of the cultivated chickpea (Cicer arietinum L.). Alien genes conferring resistance for biotic and abiotic stresses can be transferred from wild Cicer species to the cultivated chickpea but success in interspecific hybridizations has already been achieved with only two wild Cicer species. The current study was undertaken to compare fruitful heterosis in F₂ and F₃ for yield and yield criteria and to identify transgressive segregation in F₂ and F₃ in reciprocal interspecific crosses between C. arietinum and C. reticulatum Ladiz. We define fruitful heterosis as a useful parameter that can be used instead of residual heterosis. Considerable fruitful heterosis in F₂ and F₃ was found for number of seeds, pods per plant, biological yield, and seed yield. Maximum values of most of the characteristics in F₂ and F₃ were higher than that of the best parent indicating that superior progeny could be selected for yield from transgressive segregation. Progeny selection should be based on number of seeds, pods per plant, and biological yield since these characteristics had the highest direct effect on seed yield. The narrow sense heritability was found to be the highest for 100-seed weight. It was suggested that the cultivated chickpea could be used as female parent in interspecific hybridization to increase yield and yield criteria since progeny in F₂ and F₃ had better performance when it was used as female. In conclusion, interspecific hybridization of wild and cultivated chickpea can be used to improve yield and yield components and resistance to biotic and abiotic stresses as well.     

Evaluating the contribution of Yr genes to stripe rust resistance breeding through marker-assisted detection in wheat

Numerous stripe rust resistance genes have been identified from wheat, and new virulent races of Puccinia striiformis f. sp. tritici have also emerged in recent years. Deployment of diverse combinations of resistance genes is an efficient way to combat virulent evolution of strip rust pathogen. In this study, publically available molecular markers were used to identify the distribution of 36 Yr genes in 672 wheat accessions. The effectiveness of Yr genes individually and in combinations was also evaluated in field conditions. The result showed effective resistance of some recently applied genes, such as Yr15 and Yr65. It also showed the lost efficacy of some once widely used genes, such as Yr9 and Yr10. Moreover, significant additive effects were observed in some gene combinations, such as Yr9 + Yr18 and Yr30 + Yr46. Proper deploying of Yr genes and utilizing the positive interactions will be helpful for durable resistance breeding in wheat.     

Adaptation to iron deficiency and high pH in evergreen azaleas (<Emphasis Type="Italic">Rhododendron</Emphasis> spp.): potential resources for breeding

The growth of evergreen azaleas (Rhododendron spp.) can be altered by iron (Fe) chlorosis when plants are cultivated in a neutral-alkaline substrate. In this study, morphological and physiological responses to alkalinity and Fe deficiency were evaluated in five diploid Japanese azaleas to assess their potential as resources for breeding. R. obtusum ‘Kirin’, R. indicum ‘Shinsen’, R. × pulchrum ‘Sen-e-oomurasaki’, R. indicum ‘Osakazuki’, and R. ripense were pot cultivated in a peat-based substrate for 10 weeks, in acid and alkaline growing media with both adequate and inadequate Fe nutrition. Plant performance was generally affected by high pH of the substrate, while Fe deficiency by itself influenced few of the evaluated parameters, possibly due to the complex adaptive response mechanisms of these slow growing ornamental shrubs. According to the biochemical and physiological variations recorded on a long period of cultivation, R. indicum ‘Osakazuki’ reported the best performance. This azalea could be a valuable resource for breeders.     

Genetic relationships among resynthesized,semi-resynthesized and natural <Emphasis Type="Italic">Brassica napus</Emphasis> L. genotypes

The allopolyploidization event that created cultivated oilseed rape Brassica napus L, followed by intense breeding, reduced its genetic diversity. Resynthesized (RS) B. napus L. obtained by interspecific hybridization between genotypes of B. rapa L. and B. oleracea L. can be a valuable source for broadening genetic diversity in cultivated oilseed rape. In this study, we determined the extent of DNA polymorphism among natural accessions of oilseed rape, resynthesized B. napus, their parental species and double-low quality semi-RS lines carrying the Rfo gene. Using 10 selected primer combinations, 522 polymorphic AFLP markers were scored in the complete set of 100 Brassica sp. To detect relationships between these genotypes, a cluster analysis was performed using the Jaccard’s distance. Resynthesized allopolyploids clustered directly between their diploid parents. Cultivated accessions of oilseed rape created a compact group away from resynthesized allopolyploids as well as semi-RS lines. The natural oilseed rape group, which consists of 49 cultivars and breeding lines of oilseed rape, is characterized by lower genetic diversity than the group of 33 accessions of resynthesized oilseed rape, and the analysis showed that the double-low quality semi-RS lines represent a specific genetic variation of B. napus. The de novo resynthesized B. napus lines and the semi-RS lines of double-low quality generated from them, provide a significant opportunity for enrichment the gene pool of oilseed rape.     

Preharvest applications of growth regulators and their effect on postharvest quality of table grapes during cold storage

Over 54,600 ha of table grapes (Vitis vinifera), mainly cvs. ‘Thompson Seedless’, ‘Flame Seedless’ and ‘Redglobe’, are planted in Chile. Almost the entire production is exported to the USA, Europe, Asia, or one of several Latin American countries, which typically requires 15–40 d of maritime transportation. During this period, several physical, physiological, and pathological factors cause table grape deterioration. Because berry size is the main quality factor in international markets, farmers often overuse the growth regulators, gibberellic acid (GA₃) and forchlorfenuron (CPPU), in an effort to increase berry size. We examined the effect of preharvest growth regulators on seedless (‘Thompson Seedless’, and ‘Ruby Seedless’) and seeded (‘Redglobe’) table grape cultivars during cold (0 °C) storage plus a shelf life period of 3 d at 20 °C. The overuse of GA₃, eight instead of two GA₃ applications on Thompson Seedless, and the use of one GA₃ application on Redglobe and ‘Ruby Seedless’, increased berry pedicel thickness and lowered cuticle content but induced shatter and predisposed grapes to gray mold caused by Botrytis cinerea. In contrast, CPPU increased berry pedicel thickness and cuticle content but did not increase shatter or gray mold incidence. Clusters that were subjected to overuse of combined GA₃ and CPPU were highly sensitive to shatter, had the thickest pedicel, and developed a high gray mold incidence during cold storage. Hairline, a fine cracking developed during cold storage, was induced on ‘Thompson Seedless’ and ‘Ruby Seedless’ by growth regulators, but no hairline occurred on ‘Redglobe’ table grapes. Therefore, berry quality during cold storage is greatly influenced by growth regulator management in the vineyard.     

Stability of <Emphasis Type="Italic">Solanum aethiopicum</Emphasis> Shum accessions under varied water deficit stress levels and identification of pertinent breeding traits for resistance to water shortage

Drought is a major constraint to productivity of Solanum aethiopicum ‘Shum’ group due to loss in market and nutrient value of stressed plants. This study evaluated S. aethiopicum Shum group accessions to identify genotypes (G) that excel across moisture deficit stress levels (WLs). A split-plot arrangement composed of four WLs and twenty accessions of S. aethiopicum as main plot and sub-plot factors, respectively, was implemented in a screenhouse, and repeated for two experiments. In each experiment, there was a highly significant effect of at least two WLs on mean performance among at least two accessions for most of the traits at p < 0.05. Further, very highly significant WL × G interactions were obtained for leaf relative water content (LRWC), leaves per plant (LPP) and plant height (PH), and non-significant for leaf blade length and leaf blade width. The order of priority as breeding traits for stability superiority across WLs was suggested as LRWC > PH > LPP. Consequently, based on LRWC, the most superiorly stable accessions were identified as accession 160 followed by accessions 145, 137, 108P and 184G while the least stable ones were identified as accessions 163G, 141, 163 and 108. The broad sense heritability (H ²) for each of the three recommended traits for drought resistance breeding was above 0.9 thus supportive for a good response to selection. Drought stress negatively affected the performance of S. aethiopicum Shum group but the exhibited variation allowed for selection of superiorly stable genotypes.