A Structure-activity Relationship （SAR） Study of Fluoroquinolones with Biological Activity against Anti-S.pneumoniae

1INTRODUCTION Streptococcus pneumoniae is a key pathogen in many respiratory tract infections.In a Canada-wide surveillance study published in1999,it was reported that21.2%of pneumococcal tested were interme-diately susceptible or resistant to penicillin.As the newer respiratory fluoroquinolones are active aga-inst both penicillin-susceptible and penicillin-resis-tant isolates of S.pneumoniae,they will be increa-singly important in the future treatment of infections caused by this pathoge…     

Theoretical Investigations of the Effect of a Homologous Series of Anionic Surfactants on the Metabolism Bioactivity of Chromobacterium violaceum

Theoretical calculations were performed to obtain physicochemical properties associated with the effect of homologous anionic n-alkylsulfate surfactants on the metabolism of Chromobacterium violaceum. The quantitative experimental effects on the respiration process were those obtained from calorimetric data and were used to correlate the Structure–Activity–Relationship (SAR) of these compounds. Semiempirical AM1 and ab initio DFT levels, employing the set CEP-31G, were used for the theoretical calculations and were parameterized using the continuum-solvation model COSMO for solvent contributions. Chemometric analyses (HCA: hierarchical cluster analysis and PCA: principal component analysis) were used to correlate the physicochemical properties of these compounds and their biological activities. The results indicate that the biological activities of these compounds increase as the hydrocarbon chain length, volume, molar volume and exothermic enthalpy of formation (Δ_f H ^∘) increase; in contrast they decrease with decreases of the solvent effect (SE), ionization enthalpy (IE) and HOMO (highest occupied molecular orbital) and LUMO (lowest unoccupied molecular orbital) energies.     

Application of PCA and HCA to the Structure-activity Relationship （SAR） Study of Fluoroquinolones

1 INTRODUCTION The earliest antibacterial agents used as chemo- therapeutic drugs in the 1920s were synthetic agents, such as sulponamides. Since the discovery of peni- cillin and its entry into clinical use in the 1940s, the field has been dominated over the past 50 years by natural products or their semi-synthetic derivatives. The fluoroquinolones are the only synthetic anti- bacterial agents to rival β-lactams for impact in clinical usage in the antibacterial field. In recent years, …     

A Structure-Activity Relationship Study of Lapachol and Some Derivatives of 1,4-Naphthoquinones Against Carcinosarcoma Walker 256

AMI semiempirical molecular orbital calculations were carried out on lapachol and several derivatives of 1,4-naphthoquinone in order to investigate possible relationships between electronic structural parameters and activity against carcinosarcoma Walker 256 (W256). It was found that, among the calculated electronic indices, that the HOMO (highest occupied molecular orbital) coefficients for carbon atoms of the side-chain double bond have a significant influence in the activity, while the LUMO (lowest unoccupied molecular orbitals) apparently have no importance. Exploratory data analysis through hierarchical cluster (HCA) and principal component analysis (PCA) showed a clear separation of the active compounds from the inactive ones. The activity against W256 probably involves a mechanism wherein the quinone acts as a reducing agent through the participation of the -electrons of the side-chain double bond. A classification study with respect to structure-activity using KNN (K-nearest neighbors) and SIMCA (soft independent modeling of class analogy), two established chemometric methods of pattern recognition, have been used to predict activity for a series of lapachol derivatives.     

A quantitative structure-activity relationship for antitumor activity of long-chain phenols from Ginkgo biloba L

With the aim of obtaining compounds with strong antitumor activity, a quantitative structure-activity relationship (QSAR) of antitumor phenolic compounds (long-chain phenols) was derived using the Hansch-Fujita equation. The ED50 values against Chinese hamster V-79 cells were analyzed in terms of log P as the hydrophobic parameter and the energy of the lowest unoccupied molecular orbital (ELUMO) calculated by using the modified neglect of differential overlap (MNDO) method as the electronic parameter, by means of multiple regression analysis. It was found that the activities mainly depended on log P (an optimum log P of 8.3) and a low-lying ELUMO value. 4-Undecylcatechol, selected on the basis of the above results, exhibited strong antitumor activity against Sarcoma 180 ascites and P-388 lymphocytic leukemia.     

一类新型N型钙通道阻滞剂的比较定量构效关系研究

使用结构和量子化学参数对一系列N取代N-甲基二肽衍生物的N型钙通道阻滞活性进行了定量构效关系研究, 并使用SOMFA方法建立了三维定量构效关系模型. 结果表明分子的范德华体积和最低未占据轨道能量是影响化合物生物活性的主要因素. N原子上取代基的溶剂可及面积也对化合物的钙通道阻滞活性有重要影响. 三维定量构效关系模型进一步支持了以上结果. 这些研究结果可为设计更高活性的N型钙通道阻滞剂提供有价值的参考信息.     

Neuroleptic and antidepressant tricyclic compounds: Theoretical study for predicting their biological activity by semiempirical,density functional,and Hartree–Fock methods

The biological activity as antidepressants and/or neuroleptic of tricyclic compounds is investigated by molecular structure calculations. These calculations were carried out with semiempirical, local spin density, and Hartree–Fock methods. Using the computed highest occupied molecular orbital (HOMO) and lowest unoccupied molecular orbital (LUMO) energy values, together with their atomic orbital conformation, we have been able to establish a trend to predict the possible biological activity (BA) of tricyclic compounds. We have found that qualitatively it is possible to use any of the applied theoretical methods to obtain a trend for biological activity prediction. ©1999 John Wiley & Sons, Inc. Int J Quant Chem 71: 415–432, 1999     

Electronic structure and stability of binary and ternary aluminum‐bismuth‐nitrogen nanoclusters

The electronic structure and stability in binary and ternary aluminum‐bismuth‐nitrogen nanoclusters up to six atoms are studied using density functional theory (DFT). The lowest energy geometries were obtained by sampling the geometrical space with a Monte Carlo method and geometry optimizations, at DFT level, with M06L functional. The clusters stability is analyzed using formation and fragmentation energies. Our results show that a high concentration of nitrogen presents a tendency to form nitrogen clusters. highest occupied molecular orbital‐lowest unoccupied molecular orbital gaps show the well‐known oscillation as the number of atoms is increased. Bonding between Al, Bi, and N has mainly a π character. Bismuth and aluminum atoms tend to promote high multiplicity states in small clusters. These new binary and ternary materials provide a potential new field in optoelectronics and high energetic material compounds. © 2014 Wiley Periodicals, Inc.     

A study on the antipicornavirus activity of flavonoid compounds (flavones) by using quantum chemical and chemometric methods

The AM1 semiempirical method is employed to calculate a set of molecular properties (variables) of 45 flavone compounds with antipicornavirus activity, and 9 new flavone molecules are used for an activity prediction study. Principal Component Analysis (PCA), Hierarchical Cluster Analysis (HCA), Stepwise Discriminant Analysis (SDA), and K-Nearest Neighbor (KNN) are employed in order to reduce dimensionality and investigate which subset of variables should be more effective for classifying the flavone compounds according to their degree of antipicornavirus activity. The PCA, HCA, SDA, and KNN methods showed that the variables MR (molar refractivity), B(9) (bond order between C(9) and C(10) atoms), and B(25) (bond order between C(11) and R(7) atoms) are important properties for the separation between active and inactive flavone compounds, and this fact reveals that electronic and steric effects are relevant when one is trying to understand the interaction between flavone compounds with antipicornavirus activity and the biological receptor. In the activity prediction study, using the PCA, HCA, SDA, and KNN methodologies, three of the 9 new flavone compounds studied were classified as potentially active against picornaviruses.     

Molecular orbital analysis of chemical carcinogens

Simple molecular orbital calculations are employed in searching electronic parameters which may characterize the chemical carcinogens. Using frontier orbitals, the carcinogen-DNA bond formation is described as an electron transfer from the highest occupied molecular orbital (HOMO) of DNA to the lowest unoccupied molecular orbital (LUMO) of the carcinogen. Analysis of the DNA bases units shows that the electron donation occurs preferentially at the guanine site. The calculated low LUMO energy of several carcinogens indicate correctly the electrophilic character of these compounds. The difference between the carcinogen and the ultimate carcinogen is analyzed. Epoxides, free radicals, alkylating agents, and other metabolite forms are studied. A reasonable correlation is found between the LUMO energy and the carcinogenic function. © 1997 John Wiley & Sons, Inc.     

基于芘并咪唑的电致发光材料的合成与表征

以芘和咪唑为基本构筑单元,利用"一锅法"合成了一系列芘并咪唑衍生物PyPI,PyTPAI,PyCzI和Pyd-CzI.采用质谱、核磁和元素分析等手段表征了化合物的结构.通过调节与芘并咪唑相连接的共轭基团的种类、大小和空间构型,实现对分子热学性质,分子轨道能级和光电性质的调控.进一步制备了有机电致发光器件,得到了较好的器件性能.     

Theoretical study of one-photon and two-photon absorption properties of perylene tetracarboxylic derivatives

The geometrical structure, electronic structure, one-photon absorption (OPA) and two-photon absorption (TPA) properties of the perylene tetracarboxylic derivatives (PTCDs) were studied theoretically by using density functional theory (DFT) and Zerner's intermediate neglect of differential overlap (ZINDO) methods. The results revealed that increasing the number of naphthalene nucleus, extending the conjugated length on long axis, increasing the strength of donor group on lateral side, decreasing the DeltaE(H-L) (energy gap between the highest occupied orbital and the lowest unoccupied orbital) and keeping the conjugation effect and inductive effect along the same molecular axis are the efficient ways to enlarge TPA cross section of PTCDs compounds. The results that PTCDs compounds exhibited extremely large TPA cross section of around 800-1100 nm (near infrared region) shed light into the significance of the PTCDs compounds for applications in TPA labeling materials in vivo.     

有机半导体非平衡态HOMO和LUMO能量位移规律与OLED中“热激子”形成的唯象理解

以能斯特方程为基础, 通过分析电流密度与氧化还原物种活度变化, 即载流子浓度变化的关系, 计算出有机半导体材料电极电势的变化, 从而建立起有机半导体前线轨道, 即最高占据分子轨道(HOMO)能级和最低未被占据分子轨道(LUMO)能级相对于热力学平衡态的能量位移随电流密度变化的数学关系. 进而依据能级能量位移引起的能隙变化, 提出了有机电致发光显示器（OLED）中“热激子”的产生机制.