Feeding ecology,population structure and distribution of Pomatoschistus microps (Krøyer, 1838) and Pomatoschistus minutus (Pallas, 1770) in a temperate estuary,Portugal

The feeding ecology, growth and spatial–temporal abundance and distribution of Pomatoschistus microps (Krøyer, 1838) and Pomatoschistus minutus (Pallas, 1770) were studied between June 2003 and June 2004, based on beam trawl surveys and macrobenthic samples conducted in the Mondego estuary, Portugal. Polychaetes, molluscs and amphipods were the most important items in the diet of P. microps, while for P. minutus the dominant preys were polychaetes, mysids and decapods. Pomatoschistus microps' recruitment lasted for six months and was composed of three new cohorts per year. Pomatoschistus minutus had an uncommon long reproductive season, from April to November, and population segregation was found, corresponding to the two reproductive peaks. Populations of both species were composed mainly of 0-group individuals with sand gobies presenting a more extended life span. In the Mondego estuary, inter- and intra-specific spatial segregation occurred between the two species and between the 0+ and 1+ age groups of P. microps.     

Effects of current exposure on habitat preference of mobile 0-group epibenthos for intertidal seagrass beds (Zostera noltii) in the northern Wadden Sea

In the northern Wadden Sea, the extent of intertidal seagrass beds, their plant biomass and shoot density highly depends on local current regimes. This study deals with the role of intertidal Zostera noltii beds as nursery for mobile epibenthic macrofauna and the impact of seagrass bed characteristics on their abundance and distribution patterns. According to their exposure to the main tidal gullies, sampling sites were separated into exposed, semi-exposed and sheltered. Dominant species of crustaceans and demersal fish were studied in respect of their abundances within seagrass beds and adjacent unvegetated areas. Quantitative sampling was performed at day and night high tide using a portable drop trap. In general, species composition varied little between seagrass beds and bare sand. However, the presence of vegetation had a quantitative effect increasing individual numbers of common epifaunal species. Abundances of 0-group shore crabs (Carcinus maenas), common gobies (Pomatoschistus microps) and brown shrimps (Crangon crangon) were highest within sheltered seagrass beds. With decreasing plant density habitat preference of epibenthos changed on species level. By regulating the habitat complexity the currents regime is profoundly influencing the nursery function of intertidal seagrass beds in the Wadden Sea.     

Cloning and sequence analysis of the self-fertilizing fish Rivulus marmoratus immediate early gene c-fos

We have cloned the proto-oncogene c-fos from a self-fertilizing fish Rivulus marmoratus (Cyprinodontiformes, Rivulidae) after screening of R. marmoratus λGEM-11 genomic DNA library, and sequenced over 12 kb including all exons, introns and the promoter region. The R. marmoratus c-fos gene consisted of one noncoding exon and four exons with high similarity to those of fugu and mammals. We sequenced ≈7 kb of the R. marmoratus c-fos gene promoter region to gain a better understanding of the molecular anatomy of the immediate response of this gene upon cellular damage. In the promoter region, R. marmoratus c-fos gene has seven xenobiotic response elements (XREs) and eight metal response elements (MREs) as well as two estradiol (E2), 4 NFκB, 2 CarG, 2 prolactin (PRL) motifs and one pit1 site, while the 3^′-UTR of this gene contains the estrogen response element (ERE). The seven XRE and eight MRE motifs raise the possibility of its regulation by exposure to environmental pollutants. In this paper, we discuss the gene structure of R. marmoratus c-fos gene and compare its promoter region with those of other organisms' c-fos genes. We propose its potential use in ecotoxicology.     

Genomic cloning and expression of vitellogenin gene from the self-fertilizing fish Rivulus marmoratus (Cyprinodontiformes, Rivulidae)

We cloned the vitellogenin gene from the self-fertilizing fish Rivulus marmoratus, and sequenced 12,326 bp. The number of exons of R. marmoratus and rainbow trout vitellogenin genes were different, and also the splicing junctions are different throughout most of the exons and introns but the amino acid similarity of R. marmoratus vitellogenin gene to other species was rather high. In promoter region of R. marmoratus vitellogenin gene, there were several E2 binding sites and the estrogen response element (ERE). We discuss here the gene structure and expression of R. marmoratus vitellogenin gene.     

Morphometric or morpho-anatomal and genetic investigations highlight allopatric speciation in Western Mediterranean lagoons within the Atherina lagunae species (Teleostei, Atherinidae)

Current distribution of Atherina lagunae poses an interesting biogeographical problem as this species inhabits widely separate circum-Mediterranean lagoons. Statistical analyses of 87 biometric parameters and genetic variation in a portion of the cytochrome b gene were examined in four populations of A. lagunae from Tunisian and French lagoons. The results suggested a subdivision into two distinct Atherinid groups: one included the French lagoonal sand smelts and the second included the Tunisian ones. Tunisian lagoonal sand smelts were distinguished from the French ones by the lower number of lateral line scales, vertebrae, pectorals and first dorsal fin rays and the higher number of lower and total gillrakers. In addition, A. lagunae from Tunisian lagoons are characterised by short preorbital length, developed operculum, broad interorbital space, larger head, robust body and a relatively small first dorsal fin which is positioned backwards. In addition, intraspecific sequence variation in a portion of the cytochrome b gene was examined in 87 individuals from Tunisia and France. The high correlation between the results of the molecular phylogenetic tree and biometric statistical data analysis suggested that two different sibling species or at least sub-species or semi-species have colonised the lagoons. In addition, our analyses suggested that the evolution of A. lagunae probably occurred in two steps including marine sympatric speciation within the large Atherina boyeri complex and a post-Pleistocene colonisation of the lagoons.     

High gene flow promotes the genetic homogeneity of the fish goby Pomatoschistus marmoratus (Risso, 1810) from Mar Menor coastal lagoon and adjacent marine waters (Spain)

The extreme environmental variability of coastal lagoons suggests that physical and ecological factors could contribute to the genetic divergence among populations occurring in lagoon and open‐coast environments. In this study we analysed the genetic variability of lagoon and marine samples of the sand goby, Pomatoschistus marmoratus (Risso, 1810) (Pisces: Gobiidae), on the SW Spain coast. A fragment of mitochondrial DNA control region (570 bp) was sequenced for 196 individuals collected in five localities: Lo Pagan, Los Urrutias and Playa Honda (Mar Menor coastal lagoon), and Veneziola and Mazarrón (Mediterranean Sea). The total haplotype diversity was h = 0.9424 ± 0.0229, and the total nucleotide diversity was π = 0.0108 ± 0.0058. Among‐sample genetic differentiation was not significant and small‐scale patterns in the distribution of haplotypes were not apparent. Gene flow and dispersal‐related life history traits may account for low genetic structure at a small spatial scale. The high genetic diversity found in P. marmoratus increases its potential to adapt to changing conditions of the Mar Menor coastal lagoon.     

Food and habitat resource partitioning between three estuarine fish species on the Swedish west coast

In 1978 the food and habitat resource partitioning of three small and common fish species, viz. Pomatoschistus microps (Krøyer), Gasterosteus aculeatus (L.) and Pungitius pungitius (L.) were studied in river Broälven estuary on the Swedish west coast (58°22′N, 11°29′E). The area was divided into three habitats, based on environmental features. In July, September, and October stomach contents and size distribution of each species present were analysed.In July there was high food and habitat overlap between the species. Interference interactions probably occurred between some size classes of P. microps and the other two species. P. pungitius was exposed to both intra- and interspecific interactions. In September the food and habitat overlaps between G. aculeatus and P. pungitius were high, while both had low food and habitat overlaps in relation to P. microps. Interactions between G. aculeatus and P. pungitius were probably influenced by more severe abiotic conditions in one habitat, which caused lower abundances there, and higher abundances in the other two habitats. In October no interactions were observed. These results indicate that competition for food at least temporarily determines the species distribution in a temperate estuary, and that estuarine fish populations are sometimes food limited.     

The blooms of a cyanobacterium, Microcystis cf. aeruginosa in a severely polluted estuary, the Golden Horn, Turkey

The distribution of toxic cyanobacterium Microcystis cf. aeruginosa in the severely polluted Golden Horn Estuary was studied from 1998 to 2000. Microcystis persisted at the upper estuary where the water circulation was poor and values ranged between 2.9 × 10⁴ and 2.7 × 10⁶ cells ml⁻¹ throughout the study. Simultaneously measured physical (salinity, temperature, rainfall and secchi disc) and chemical parameters (nutrients and dissolved oxygen) were evaluated together with Microcystis data. Although the Microcystis blooms generally occur in summer due to the increase in temperature, the blooms were recorded in winter in the present study. The abundance of Microcystis depended on the variations in salinity and both blooms were recorded below S = 2. A moderate partial correlation between Microcystis abundance and salinity was detected in the presence of temperature, dissolved oxygen and precipitation data (r = −0.561, p = 0.002). The M. cf. aeruginosa abundance was low in the summer when the salinity was higher than winter. A remarkable increase in the eukaryotic phytoplankton abundance following the improvements in the water quality of the estuary occurred, whilst the Microcystis abundance remained below bloom level.     

Response of Acartia populations to environmental variability and effects of invasive congenerics in the estuary of Bilbao, Bay of Biscay

The effect of environmental factors (river discharge, water temperature and dissolved oxygen saturation) on the abundance and distribution of Acartia populations and the interactions between their congenerics was evaluated by means of transfer function (TF) models in the estuary of Bilbao during the period 1998–2005. The recorded species were Acartia clausi, Acartia tonsa, Acartia margalefi and Acartia discaudata. Acartia clausi dominated in the entire euhaline region of this estuary until 2003 when it was displaced from the inner part by A. tonsa. This invasive species (A. tonsa) was found for the first time in 2001 and colonized successfully the inner (salinity 30) and intermediate (salinity 33) waters of this estuary since 2003. The TF models revealed an immediate and negative effect of A. tonsa on A. clausi in the intermediate salinity (33) waters, where these species showed the highest spatial overlap. The results indicate that environmental changes from 2003 influenced the abundance of Acartia species, being unfavourable for A. clausi. The decrease of A. clausi abundance in low salinity waters was related to a significant decrease of dissolved oxygen saturation levels, whereas the increase of temperature was linked to a significant increase of A. tonsa. Acartia margalefi and A. discaudata were scarce over the entire period, but they were found to be valuable indicators of hydrological changes, which were associated to climate factors. These two latter species increased in abundance and expanded their seasonal distribution, and in the case of A. margalefi also its spatial distribution, in 2002, coinciding with the period in the time-series when autumn–winter rainfall and summer temperatures were lowest, and dissolved oxygen saturation levels were highest.     

Trophic ecology of Pomatoschistus microps within an intertidal bay (Roscoff,France), investigated through gut content and stable isotope analyses

The diet of Pomatoschistus microps has been studied using both gut content and stable isotope analyses. In the Roscoff Aber Bay (Brittany, France), this fish is commonly found on sandy muddy intertidal flats. Gut content analyses were also interpreted using trophic indices. Owing to the large diversity of prey consumed, these indices emphasised the opportunistic feeding behaviour of P. microps. Here, this species fed mainly on endofauna with meiofauna being of high relative importance. The main biotic components of its trophic habitat, characterized by δ¹³C and δ¹⁵N, provided evidence of a major trophic pathway based on drift Enteromorpha sp. Trophic positions estimated by both diet analyses and isotopic analyses led to similar results. In this bay, P. microps is a first‐order predator with a low degree of omnivory. Despite a preferential consumption of the amphipod Corophium arenarium, we assumed that this goby behaves as a generalist feeding on a uniform variety of endofauna taxa.     

Seasonal changes in community composition and trophic structure of fish populations of five salt marshes along the Essex coastline, United Kingdom

European intertidal salt marshes are important nursery sites for juvenile fish and crustaceans. Due to the increasing threat of habitat loss, the seasonal changes of salt marsh fish communities need to be understood in order to appreciate the ecological and economic importance of the saltmarsh habitat. This study was the first in Great Britain to investigate the seasonal changes of salt marsh fish communities and the variation in community structure between closely located marsh habitats. Between February 2007 and March 2008, five marshes on three estuaries of the Essex coastline were sampled using flume nets to block off intertidal creeks at high tide. Fourteen fish species were caught. The community overall was dominated by three species that made up 91.6% of the total catch: the common goby Pomatoschistus microps (46.2% of the total catch), juvenile herring Clupea harengus (24.3%), and juvenile and larval sea bass Dicentrarchus labrax (21.2%). Cluster analysis demonstrated clear seasonal patterns, with some community structures unique to specific marshes or estuaries. The marsh fish community shifts from a highly diverse community during spring, to a community dominated by D. labrax and P. microps in autumn, and low diversity during winter months. Gravimetric stomach content analysis of fish community identified three main trophic guilds; macroinvertivores, planktivores and omnivores. The macroinvertivore feeding guild contained D. labrax and P. microps, the two most frequently occurring species. This investigation demonstrates the importance of British salt marshes as nursery habitats for commercial fish species.     

Toxic effects of decomposing red algae on littoral organisms

Large masses of filamentous red algae of the genera Polysiphonia, Rhodomela, and Ceramium are regularly washed up on beaches of the central Baltic Sea. As the algal masses start to decay, red coloured effluents leak into the water, and this tinge may be traced several hundred meters off shore. In this study, possible toxic effects of these effluents were tested on littoral organisms from different trophic levels. Effects on fertilisation, germination and juvenile survival of the brown seaweed Fucus vesiculosus were investigated, and mortality tests were performed on the crustaceans Artemia salina and Idotea baltica, as well as on larvae and adults of the fish Pomatoschistus microps. Fucus vesiculosus was the most sensitive species of the tested organisms to the red algal extract. The survival of F. vesiculosus recruits was reduced with 50% (LC50) when exposed to a concentration corresponding to 1.7 g l⁻¹ dw red algae. The lethal concentration for I. baltica, A. salina and P. microps were approximately ten times higher. The toxicity to A. salina was reduced if the algal extract was left to decompose during two weeks but the decline in toxicity was not affected by different light or temperature conditions. This study indicates that the filamentous red algae in the central Baltic Sea may produce and release compounds with negative effects on the littoral ecosystem. The effects may be particularly serious for the key species F. vesiculosus, which reproduce in autumn when filamentous red algal blooms are most severe.     

In two waters: contemporary evolution of lagoonal and marine white seabream (Diplodus sargus) populations

Brackish water ecosystems are often exposed to wide variations in environmental variables, including temperature and salinity, which may cause strong selective pressures on organisms modifying the genetic patterns of species. The aim of this work was to test whether there is a ‘divergence-with-gene flow’ in coastal lagoon populations of white seabream (Diplodus sargus) (Ria Formosa, S Portugal and Mar Menor, SE Spain) respect to four marine populations, by using partial sequences of cyt b mitochondrial gene and information from nine microsatellite loci. Genetic diversity was highest in both coastal lagoons (Mar Menor and Ria Formosa) considering mitochondrial and nuclear markers. Although some of F_ST population pairwise comparisons were not significant, analyses of molecular variance (AMOVAs) detected differences between groups (coastal lagoon and marine) close to significance. Also, only two haplotypes (Cytb-17 and Cytb-18) were detected in both coastal lagoon sampling sites and these localities (Mar Menor and Ria Formosa) showed the highest number of singletons, some of them with a high number of mutations, as has been already described for other Mar Menor populations (Pomatochistus marmoratus and Holothuria polii). Also, several tests detected significant positive and balancing selection considering mtDNA and microsatellite data. These data support the hypothesis of selection as one of the drivers of the genetic differences found between coastal lagoon and marine populations. The life strategy adopted by Diplodus sargus in coastal lagoons allows it to decrease its mortality rate and improve the heritability of its genes. Also, the increase time spent in coastal lagoons with different temperatures and salinities favours the fitness selection and the maintenance of exclusive haplotypes and genotypes in coastal lagoon inhabitants favouring the ‘divergence-with-gene-flow’.     

Reproduction in two deep-sea anemones (Actiniaria); Phelliactis hertwigi and P. robusta

Bathymetric distribution, abundance, substrate choice and gametogenesis have been investigated in two species of deep-sea actiniarians found in the northeast Atlantic Ocean. Phelliactis hertwigi occurs at 719–1448m in the Porcupine Seabight, usually encloses a bolus of sediment within its highly concave pedal disc (79.7%), and has abundances of up to 14.5 individuals 1000m⁻². Phelliactis robusta occurs at 1600–2173m in the Porcupine Seabight, but extends deeper in the Bay of Biscay. In areas of soft sediment it is associated strongly with clinker (92.7%) and attains densities of 2.9 individuals 1000m⁻².Both species are dioecious. Their sperm appear similar to those of the related intertidal Calliactis spp. Previtellogenesis and vitellogenesis of the oocytes have been defined by ultrastructural and histochemical studies. In P. hertwigi mature oocytes measure up to 180μm, and to 210μm in P. robusta. In P. hertwigi oogenesis takes 8–9 months, with spawning in October/November, whereas in the deeper-living P. robusta oogenesis occupies 15 to 19 months and spawning occurs in April/ May. Evidence is produced to suggest that these two contrasting cycles are related to the rate and seasonality of deposition of organic matter to the deep-sea floor.     

Species composition and dietary relationships in a brackish shallow water fish assemblage in the Bothnian Sea,Sweden

A nearshore fish assemblage inhabiting a shallow bay in the southern Bothnian Sea, Sweden, with demanding environmental conditions (c. 5‰; >15°C during 4 months 1980 and 1 month 1981) was studied during a two-year period, in 1980 and 1981. Seasonal distribution patterns, dietary relationships, and growth rates were studied in Pungitius pungitius (L.), Pomatoschistus minutus (Pallas.), Gasterosteus aculeatus (L.), Phoxinus phoxinus (L.), Pomatoschistus microps (Krøyer) and Gobius niger L. The structure of the juvenile populations changed both over seasons and years but the adult populations remained constant. Lower water temperature, fewer individuals, lower and delayed fish growth, and lower interspecific food overlaps were found in 1981 compared to 1980. Few significant correlations were found in both years between the following community parameters: diversity, niche width, food overlap, and the proportion of each species in the fish assemblage.According to these results it is suggested that food competition and resource partitioning were of minor importance for the structuring of the fish community in the present area. Rather, the extreme salinity and the fluctuations in temperature regulated the fish populations. One may conclude that the populations of juveniles were more influenced by short-term changes in the environment than those of the adults.     

基于Ecopath模型的舟山海域褐菖鲉(Sebastiscus marmoratus)生态容量评估

根据2021年渔业资源调查数据构建了含有23个功能组的舟山海域生态系统Ecopath模型,分析了当前舟山海域生态系统总体特征并估算了褐菖鲉在舟山海域的生态容量。结果表明:舟山海域生态系统营养级范围为1.000 (浮游植物和有机碎屑)～4.277 ( 鳐类),石首鱼科、虾类和 鳐类为舟山海域生态系统中的关键种。碎屑食物链和牧食食物链是舟山海域生态系统主要的食物链。碎屑和浮游植物对食物网的贡献率分别为61.32%和38.69%。始于浮游植物和碎屑的营养传递效率分别是9.34%和10.50%,系统总营养传递效率是9.82%。总初级生产量/总呼吸量为2.26,系统连接指数为0.372,系统杂食性指数为0.222。生态系统总体特征反映了舟山海域生态系统的成熟状态较低,生态系统处于不稳定阶段,容易受到外界环境变化的影响。根据模型估算,当褐菖鲉生物量增加至8.6倍时,褐菖鲉达到生态容量0.007 95 t/km²,此时生态系统仍保持平衡,且生态系统总体特征基本稳定。因此,褐菖鲉在舟山海域尚有较大增殖潜力。     

Cloning of cytochrome P450 1A (CYP1A) genes from the hermaphrodite fish Rivulus marmoratus and the Japanese medaka Oryzias latipes

To use two small fish Rivulus marmoratus (Cyprinodontiformes, Rivulidae) and the Japanese medaka Oryzias latipes (Belloniformes) as testing models in molecular ecotoxicology, we have cloned the cytochrome P450 1A (CYP1A) gene after screening of both genomic DNA libraries, and sequenced 11,863 and 7,243 bp including all the exons and introns with promoter regions, respectively. The Rivulus and the medaka CYP1A gene consisted of seven exons (including non-coding exons) with high homology to mammals. In the promoter region, Rivulus CYP1A gene has seven xenobiotic response elements (XREs) and two metal response elements (MREs), while the Japanese medaka CYP1A gene has six XREs and four MREs. Interestingly, medaka CYP1A gene has a number of MREs at the promoter, which may affect its response on metal exposure. We describe here the gene structure of both fish CYP1A genes.     

Spatial distribution patterns of the peppery furrow shell Scrobicularia plana (da Costa, 1778) along the European coast: A review

The bivalve Scrobicularia plana is an important species of shallow water benthic communities with a wide geographic distribution but also with a general patchy pattern, i.e. irregular in occurrence and in density. This review aims to determine the processes responsible for the species' spatial distribution pattern based on the available information on S. plana. Although several pre- and post-settlement processes are believed to influence spatial patterns of marine invertebrates, the general patchy distribution of S. plana seems to be determined by the existence of specific environmental conditions during settlement. Factors such as temperature, salinity, sediment type, hydrographic conditions and predation affect settlement and spat survival and not one but a combination of factors seems to explain the species distribution pattern. Future work should focus on determining the scale of patchiness, using hierarchical sampling, as well as the connectivity between populations by analysing the population genetic structure.     

Environmental factors structuring fish composition and assemblages in a small macrotidal estuary (eastern English Channel)

The fish assemblage structure was analyzed along an estuarine gradient of a small macrotidal estuary (the Canche, France). Fishes were collected every two months between May 2006 and July 2007 from 12 sampling stations using a 1.5-m beam trawl with a 5 mm mesh size in the cod end. To complement this information, sampling was also performed using 15-m fyke nets (8 mm mesh size in the cod end). For each sample, abiotic (temperature, salinity, pH, oxygen, turbidity, river flow, wind speed and depth) and biotic (macro crustacean species abundances) were recorded. Throughout the study, 28 fish species belonging to 20 families were collected. Fish catches were dominated by juveniles, especially Young-Of-the-Year (YOY) for the majority of the species. According to the Index of Relative Importance (IRI), common goby Pomatoschistus microps, flounder Platichtys flesus, sprat Sprattus sprattus, sea-bass Dicentrarchus labrax and plaice Pleuronectes platessa were the most abundant species, together accounting for 99.2% of the total IRI. Estuarine residents (ER = 66.2%) and marine juvenile migrants species (MJ = 31.4%) were the most important ecological guilds. The structure of the fish assemblage and its relationship to environmental variables was examined using multivariate techniques. Cluster and non-metric multidimensional scaling (nMDS) analysis defined six distinct groups in the Canche estuary, which are discriminated by specific species (SIMPER). Spatio-temporal variations in fish assemblage structure reflect the density peaks of the most abundant species. Spearman rank correlations and canonical correspondence analysis (CCA) showed that among the ten environmental variables examined, temperature, salinity and Crangon crangon (a potential predator for YOY fish or prey for older ones) are the three most important factors influencing fish species richness and abundances. Our observations reinforce the idea that certain fish species may have different life history styles in different geographic areas. The present study highlights the necessity of a better knowledge of the connectivity between estuaries and adjacent marine areas. The Canche constitutes an important ecosystem for fishes and as it is subject to little anthropogenic disturbance; its ichthyofauna can be viewed as a reference or normal assemblage for small temperate macrotidal estuaries.