Biodegradation of Polyhydroxyalkanoate Films in Natural Environments

Summary: Biodegradation of film specimens from polyhydroxyalkanoates (PHAs) of two types – poly-3-hydroxybutyrate (PHB) and poly-3-hydroxybutyrate-co-3-hydroxyvalerate (PHBV) – was analysed in different environments: tropical sea waters of the South China Sea (Nha Trang, Vietnam) and soils in the environs of Hanoi (Vietnam), Nha Trang (Vietnam) and Krasnoyarsk (Siberia, Russia). In seawater, the mass loss of the specimens of both types was almost equal. However, in tropical soils, PHB degraded quicker than PHBV. In the Siberian soil, the degradation rate of the PHBV was generally higher than that of PHBV. Analysis of molecular mass of PHA specimens showed its decreasing during biodegradation. In the tropical sea conditions, PHA degrading microorganisms were represented by bacteria of Enterobacter, Bacillus and Gracilibacillus genera. Among PHA degrading bacteria, Burkholderia, Alcaligenes, Bacillus, Mycobacterium and Streptomyces genera were identified in Vietnamese soils, and Variovorax, Stenotrophomonas, Acinetobacter, Pseudomonas, Bacillus and Xanthomonas genera in Siberian soils. Micromycetes of Gongronella, Paecilomyces, Penicillium and Trichoderma genera exhibited PHA degrading activity in Vietnamese soils, and Paecilomyces, Penicillium, Acremonium, Verticillium and Zygosporium genera – in Siberian soils.     

Synthesis, π‐Face‐Selective Aggregation,and π‐Face Chiral Recognition of Configurationally Stable C3‐Symmetric Propeller‐Chiral Molecules with a π‐Core

The C₃‐symmetric propeller‐chiral compounds (P,P,P)‐ 1 and (M,M,M)‐ 1 with planar π‐cores perpendicular to the C₃‐axis were synthesized in optically pure states. (P,P,P)‐ 1 possesses two distinguishable propeller‐chiral π‐faces with rims of different heights named the (P/L)‐face and (P/H)‐face. Each face is configurationally stable because of the rigid structure of the helicenes contained in the π‐core. (P,P,P)‐ 1 formed dimeric aggregates in organic solutions as indicated by the results of ¹H NMR, CD, and UV/Vis spectroscopy and vapor pressure osmometry analyses. The (P/L)/(P/L) interactions were observed in the solid state by single‐crystal X‐ray analysis, and they were also predominant over the (P/H)/(P/H) and (P/L)/(P/H) interactions in solution, as indicated by the results of ¹H and 2D NMR spectroscopy analyses. The dimerization constant was obtained for a racemic mixture, which showed that the heterochiral (P,P,P)‐ 1 /(M,M,M)‐ 1 interactions were much weaker than the homochiral (P,P,P)‐ 1 /(P,P,P)‐ 1 interactions. The results indicated that the propeller‐chiral (P/L)‐face interacts with the (P/L)‐face more strongly than with the (P/H)‐face, (M/L)‐face, and (M/H)‐face. The study showed the π‐face‐selective aggregation and π‐face chiral recognition of the configurationally stable propeller‐chiral molecules.     

On unicyclic conjugated molecules with minimal energies

The energy of a graph is defined as the sum of the absolute values of all the eigenvalues of the graph. Let U(k) be the set of all unicyclic graphs with a perfect matching. Let C _g(G) be the unique cycle of G with length g(G), and M(G) be a perfect matching of G. Let U ⁰(k) be the subset of U(k) such that g(G)≡ 0 (mod 4), there are just g/2 independence edges of M(G) in C _g(G) and there are some edges of E(G)\ M(G) in G\ C _g(G) for any G∈U ⁰(k). In this paper, we discuss the graphs with minimal and second minimal energies in U ^*(k) = U(k)\ U ⁰(k), the graph with minimal energy in U ⁰(k), and propose a conjecture on the graph with minimal energy in U(k).      

Light-induced cis/trans isomerization of cis-[Pd(L-S,O)2] and cis-[Pt(L-S,O)2] complexes of chelating N,N-dialkyl-N′-acylthioureas: key to the formation and isolation of trans isomers

Irradiation cis-[M(Lⁿ-S,O)₂] complexes (M = Pt^II, Pd^II) derived from N,N-dialkyl-N′-benzoylthioureas (HLⁿ) with various sources of intense visible polychromatic or monochromatic light with λ < 500 nm leads to light-induced cis?→?trans isomerization in organic solvents. In all cases, white light derived from several sources or monochromatic blue-violet laser 405 nm light, efficiently results in substantial amounts of the trans isomer appearing in solution, as shown by ¹H NMR and/or reversed-phase HPLC separation in dilute solutions at room temperature. The extent and relative rates of cis/trans isomerization induced by in situ laser light (λ = 405 nm) of cis-[Pd(L²-S,O)₂] was directly monitored by ¹H NMR and ¹⁹⁵Pt NMR spectroscopy of selected cis-[Pt(L-S,O)₂] compounds in chloroform-d; both with and without light irradiation allows the δ(¹⁹⁵Pt) chemical shifts cis/trans isomer pairs to be recorded. The cis/trans isomers appear to be in a photo-thermal equilibrium between the thermodynamically favored cis isomer and its trans counterpart. In the dark, the trans isomer reverts back to the cis complex in what is probably a thermal process. The light-induced cis/trans process is the key to preparing and isolating the rare trans complexes which cannot be prepared by conventional synthesis as confirmed by the first example of trans-[Pd(L-S,O)₂] characterized by single-crystal X-ray diffraction, deliberately prepared after photo-induced isomerization in acetonitrile solution.     

Vapour phase alkylation of ethylbenzene with t -butyl alcohol over mesoporous Al-MCM-41 molecular sieves

The alkylation of ethylbenzene witht-butyl alcohol was studied over Al-MCM-41 (Si/Al = 50 and 90) and Al, Mg-MCM-41 (Si/(Al+Mg) = 50) in the vapour phase from 200 to 400°C. The products werep-t-butylethylbenzene (p-t-BEB),p-t- butylvinylbenzene (p-t-BVB) andm-t-butylethylbenzene (m-t-BEB). Ethylbenzene conversion decreased with increase in temperature and increase in the ethylbenzene content of the feed. The reaction between the freely diffusing ethylbenzene in the channel and thet-butyl cations remaining as charge compensating ions yieldedp-t- BEB.p-t-BVB, an unexpected product in this investigation, was produced by dehydrogenation ofp-t-BEB over alumina particles present in the channels of the molecular sieves. Adsorption of ethylbenzene on Br?nsted acid sites and its subsequent reaction with very closely adsorbedt-butyl cations proved to be necessary to obtainm-t-BEB. Thoughm-t-BEB was obtained, the correspondingm-t-butylvinylbenzene was not observed in this study. Study of time durations indicated rapid and slow catalyst deactivation at lower and higher streams respectively.     

Photocatalytic E→Z Contra-Thermodynamic Isomerization of Vinyl Silanes with Lewis Base

Herein, we disclosed the contra-thermodynamic E→Z isomerization of alkenyl silanes, according to the in situ formation of a chromophoric species, in the presence of rac-BINAP as the catalyst. The reaction carried out in DMSO or CH₃CN under irradiation at 405 nm allowed the interconversion of the E-isomers into the Z-congeners in good to excellent yields and outstanding Z/E selectivities, on 18 examples. Finally, the mechanism of this E→Z isomerization was studied to get insight into the reaction mechanism.     

Diffusion of nonionic azo dyes in nylon-6

Diffusion of 2,4-dinitroaniline and three nonionic azo dyes in Nylon-6 film was studied by analysis of the concentration-distance curves (profiles) of penetrants in the polymer. Actual diffusivities D_(c) of penetrants in polymer, diffusion coefficients as a function of the concentration C_f of penetrant in polymer, were calculated from the profile. It was found that D_(c) is almost constant or decreases gradually with decreasing C_f in the range of high-medium C_f but decreases appreciably with decreasing C_f at low C_f. The change in D_(c) with C_f was explained in terms of the dual-mode sorption-diffusion model. The penetrants diffuse in the polymer as two distinct species, i.e., a dissolved species and an adsorbed species. The former is the penetrant taken up by the polymer by a partition mechanism (dissolved species) and the latter is that taken up by Langmuir sorption (adsorbed species). The actual diffusivity D_P(c) of the dissolved species decreases with decreasing C_f. While the actual diffusivity D_L(c) of the adsorbed species normally increases gradually with decreasing C_f. D_P(c) is usually larger than D_L(c). © 1993 John Wiley & Sons, Inc.     

Effect of surfactant adsorption time on the observation of Newton black film in foam film

Observation of Newton black film (NBF) in foam film is possible only with a certain probability W which depends on the concentration C of surfactant in the solution and on the time t_a during which adsorption of surfactant at the solution/air interface has taken place. In the paper, the W(C,t_a) dependence is derived and used to analyze the effect of t_a on the critical surfactant concentration C_c below which NBF in foam film practically cannot be observed. An expression for the C_c(t_a) function is obtained which reveals that C_c decreases substantially with increasing t_a. This expression is found to describe well experimental C_c(t_a) data for foam films obtained from aqueous solution of the therapeutic surfactant INFASURF.     

What to Learn from a Comparative Genomic Sequence Analysis of <Emphasis Type="Italic">L</Emphasis>-Carnitine Dehydrogenase

Summary. In contrast to eukaryotic cells certain eubacterial strains have acquired the ability to utilize L-carnitine (R-(–)-3-hydroxy-4-(trimethylamino)butyrate) as sole source of energy, carbon and nitrogen. The first step of the L-carnitine degradation to glycine betaine is catalysed by L-carnitine dehydrogenase (L-CDH, EC 1.1.1.108) and results in the formation of the dehydrocarnitine. During the oxidation of L-carnitine a simultaneous conversion of the cofactor NAD⁺ to NADH takes place. This catabolic reaction has always been of keen interest, because it can be exploited for spectroscopic L-carnitine determination in biological fluids – a quantification method, which is developed in our lab – as well as L-carnitine production.Based on a cloned L-CDH sequence an expedition through the currently available prokaryotic genomic sequence space began to mine relevant information about bacterial L-carnitine metabolism hidden in the enormous amount of data stored in public sequence databases. Thus by means of homology-based and context-based protein function prediction is revealed that L-CDH exists in certain eubacterial genomes either as a protein of approximately 35 kDa or as a homologous fusion protein of approximately 54 kDa with an additional putative domain, which is predicted to possess a thioesterase activity. These two variants of the enzyme are found on one hand in the genome sequence of bacterial species, which were previously reported to decompose L-carnitine, and on the other hand in gram-positive bacteria, which were not known to express L-CDH. Furthermore we could not only discover that L-CDH is located in a conserved genetic entity, which genes are very likely involved in this L-carnitine catabolic pathway, but also pinpoint the exact genomic sequence position of several other enzymes, which play an essential role in the bacterial metabolism of L-carnitine precursors.     

The Woodward Research Institute,Robert Burns Woodward (1917–1979) and Chemistry behind the Glass Door

Certainly a highlight in the career of Nobel Laureate Professor Robert Burns Woodward (1917–1979) was the foundation of the Woodward Research Institute (WRI) at Ciba AG in Basel, Switzerland, in 1963. Woodward's remarkable accomplishments in the development of organic chemistry altered not only our concepts of molecular structure, but also our comprehension of physico‐chemical properties. In his legacy, Woodward devised innovative strategies for natural product syntheses based on brilliant rationale of their properties and an uncanny sense of Nature. The chemistry community benefited not only at Harvard but especially in Basel and Zürich from Woodward's inspiring lectures and the opportunity to learn from the chemistry Meister. This article highlights parts of the chemistry and some personalities that contributed to forefront investigations at the Woodward Research Institute which began at the former Novartis legacy company, Ciba AG, Basel.     

Order,disorder, and geometrical information indices of molecules

Structural features of various molecular systems with symmetry of point groups ranging fromC ₁ to the icosahedral symmetry are analyzed in the framework of the model suggested previously for the evaluation of order and disorder in the arrangement of atoms in a molecule based on the equationQ = I -P/3n (whereQ is the index of order, andP is the number of independent coordinates needed to fix ann-atomic molecule in the Cartesian coordinate system). TheQ value depends on various structural parameters of the molecule: the number of atoms in it, the symmetry, the dimensionality, and the number of structural degrees of freedom. The disorder indexP/3n = 1 -Q correlates with Shannon's entropy of information, andQ correlates with negentropy or excess information; this makes it possible to useP/3n as a new geometrical information molecular index that is obtained by a nonprobabilistic method. Analysis of the relationship between order and chaos in molecular systems, as well as of the specific order indexq =Q/n, makes it possible to identify both general and specific features of molecules.Translated from Izvestiya Akadernii Nauk. Seriya Khimicheskaya, No. 8, pp. 191219-121927, August, 1996.     

UPLC–ESI–Q-TOF–MS/MS analysis of anticancer fractions from Ophiocordyceps xuefengensis and Ophiocordyceps sinensis

Ophiocordyceps xuefengensis (O. xuefengensis), a new species of caterpillar fungus, has been identified as the sister taxon of Ophiocordyceps sinensis (O. sinensis). The aims of the present study are to evaluate the anticancer activity and to qualitatively analyze the potential bioactive chemical constituents of O. xuefengensis and O. sinensis, comparatively. An MTT assay was used to evaluate the in vitro anticancer activities of different fractions from O. xuefengensis and O. sinensis. The results show that ethyl acetate fractions of O. xuefengensis and O. sinensis have significant in vitro anticancer activity. These two bioactive fractions were analyzed by ultra-performance liquid chromatography–electrospray ionization with quadrupole–time of flight tandem mass spectrometry technology. A total of 82 compounds and 101 compounds were identified or tentatively characterized in the bioactive fractions of O. xuefengensis and O. sinensis, respectively. Among these compounds, 68 existed in both O. xuefengensis and O. sinensis. A total of 67 compounds were reported in O. xuefengensis and 8 compounds were reported in caterpillar fungus for the first time. This is the first detailed comparative analysis of the in vitro anticancer activity and chemical ingredients between O. xuefengensis and O. sinensis. The application of this work will provide reliable fundamental pharmacological substances for the use of O. xuefengensis by Yao people.     

Comparative study of the phenolic profile,antioxidant and antimicrobial activities of leaf extracts of five Juniperus L. (Cupressaceae) taxa growing in Turkey

Abstract

The purpose of this study was to conduct a comparative evaluation of some biological properties of methanol and water extracts of leaves of five Juniperus taxa growing in Turkey: J. communis L. var. communis (Jcc), J. communis L. var. saxatilis Pall. (Jcs), J. drupacea Labill. (Jd), J. oxycedrus L. subsp. oxycedrus (Joo), J. oxycedrus L. subsp. macrocarpa (Sibth. & Sm.) Ball. (Jom). The antioxidant properties were examined in vitro; both in the DPPH and in the reducing power tests, Joo methanol extract resulted the most active (IC₅₀?=?0.09?±?0.01mg/mL and ASE/mL?=?2.56?±?0.06). In the TBA assay, Jcs methanol extract exhibited the highest activity (IC₅₀?=?4.39?±?0.47?μg/mL). The extracts displayed bacteriostatic activity against Staphylococcus aureus, and Jd methanol extract resulted the most effective (MIC?=?19.53?μg/mL); no effect on the S. aureus biofilm formation was observed. The extracts resulted non-toxic in the Artemia salina lethality bioassay. Finally, the phenolic profile of the methanol extracts was characterized by HPLC-PDA/ESI-MS.     

Contribution of individual flavonoids in Lysimachia species to the antioxidant capacity based on HPLC-DPPH assay

Quantitative phytochemical characterisation of the chief flavonoid aglycones in the hydrolysed Lysimachia extracts revealed the dominance of kaempferol, quercetin and myricetin in L. vulgaris, L. nummularia, L. punctata, L. christinae, L. ciliata and L. clethroides, respectively. Due to the significant radical scavenging capacity of the samples, the contribution of the individual aglycones to the total antioxidant activity became of interest. Therefore, a HPLC method coupled to pre-column DPPH scavenging assay was developed. Differences in the six Lysimachia species’ phenolic composition regarding their participation to the antioxidant activity were revealed. The participation of the three investigated flavonoids to the radical quenching activity was the highest (91.2%) in the L. vulgaris sample, the lowest in L. christinae sample with 29.6%. In L. vulgaris sample, the 76.3% contribution of quercetin to the scavenger capacity was the highest peak area decrement ratio among the investigated samples.     

Enantioselective analysis of venlafaxine and its active metabolites: A review on the separation methodologies

Venlafaxine (VFX) is a serotonin and norepinephrine reuptake inhibitor chiral drug used in therapy as an antidepressant in the form of a racemate consisting of R‐ and S‐VFX. The two enantiomers of VFX exhibit different pharmacological activities: R‐VFX inhibits both norepinephrine and serotonin synaptic reuptake, whereas S‐VFX inhibits only the serotonin one. R‐ and S‐VFX are metabolized in the liver to the respective R‐ and S‐O‐desmethylvenlafaxine (ODVFX), R‐ and S‐N‐desmethylvenlafaxine (NDVFX), and R‐ and S‐N,O‐didesmethylvenlafaxine (NODVFX). The pharmacological profile of ODVFX is close to that of VFX, whereas the other two chiral metabolites (NDVFX and NODVFX) have lower affinity for the receptor sites. The pharmacokinetics of the VFX enantiomers appear stereoselective, including the metabolism process. In the past 20 years, several studies describing the enantioselective analysis of R‐ and S‐VFX in pharmaceutical formulations and its chiral metabolites in biological matrices were published. These methods encompass liquid chromatography coupled with UV detection, mass spectrometry, or tandem mass spectrometry, and capillary electrophoresis. This paper reviews the published methods used for the determination of the individual enantiomers of VFX and its chiral metabolites in different matrices.     

Band‐Gap Manipulations of Monolayer Graphene by Phenyl Radical Adsorptions: A Density Functional Theory Study

Phenyl radical (Ph^.) adsorption on monolayer graphene sheets is used to investigate the band‐gap manipulation of graphene through density functional theory. Adsorption of a single Ph^. on graphene breaks the aromatic π‐bond and generates an unpaired electron, which is delocalized to the ortho or para position. Adsorption of a second radical at the ortho or para position saturates the radical by electron pairing and results in semiconducting graphene. Adsorption of a second radical at the ortho position (ortho–ortho pairing) is found to be more favorable than adsorption at the para position (ortho–para pairing), and the ortho–ortho pairing has stronger effects on band‐gap opening compared with ortho–para pairing. Adsorption of even numbers of Ph^. on graphene by ortho–ortho and ortho–para pairings, in general, increases the band gap. Our study shows promise of band‐gap manipulation in monolayer graphene by Ph^. adsorption, leading to potential wider applications of graphene.     

Formation of β‐iPP in isotactic polypropylene/ethylene–propylene rubber blends: Effects of preparation method,composition, and thermal condition

The effects of preparation method, composition, and thermal condition on formation of β‐iPP in isotactic polypropylene/ethylene–propylene rubber (iPP/EPR) blends were studied using modulated differential scanning calorimeter (MDSC), wide angle X‐ray diffraction (WAXD), and phase contrast microscopy (PCM). It was found that the α‐iPP and β‐iPP can simultaneity form in the melt‐blended samples, whereas only α‐iPP exists in the solution‐blended samples. The results show that the formation of β‐iPP in the melt‐blended samples is related to the crystallization temperature and the β‐iPP generally diminishes and finally vanishes when the crystallization temperature moves far from 125 °C. The phenomena that the lower critical temperature of β‐iPP in iPP/EPR obviously increases to 114 °C and the upper critical temperature decreases to 134 °C indicate the narrowing of temperature interval, facilitating the formation of β‐iPP in iPP/EPR. Furthermore, it was found that the amount of β‐iPP in melt‐blended iPP/EPR samples is dependent on the composition and the maximum amount of β‐iPP formed when the composition of iPP/EPR blends is 85:15 in weight. The results through examining the effect of annealing for iPP/EPR samples at melt state indicate that this annealing may eliminate the susceptibility to β‐crystallization of iPP. However, only α‐iPP can be observed in solution‐blended samples subjected to annealing for different time. The PCM images demonstrate that an obvious phase‐separation happens in both melt‐blended and solution‐blended iPP/EPR samples, implying that compared with the disperse degree of EPR in iPP, the preparation method plays a dominant role in formation of β‐iPP. It is suggested that the origin of formation of β‐iPP results from the thermomechanical history of the EPR component in iPP/EPR. © 2007 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 45: 1704–1712, 2007     

New algorithms for the computation of column dynamics of multicomponent liquid phase adsorption

New and efficient numerical algorithms were developed for simulating column dynamics of multicomponent liquid phase adsorption. Simple and realistic models are used for the simulation. Langmuir form of isotherm and linear driving force rate expressions are employed in the model equations. Algorithms were formulated for three different rate control mechanisms, namely, film diffusion control, particle diffusion control and combined film and particle diffusion control. The algorithms derived are explicit with the exception of the requirement of solving a nonlinear equation in one single variable which is the concentration of a reference species. Thus the tedious iterative calculation procedure for solving simultaneous nonlinear equations in a multicomponent fixed bed system is avoided. Example calculations indicated very good numerical accuracy as verified from an independent check by means of an overall mass balance.Nomenclature C Concentration of speciesi in the solution. mol/l - h _i Dimensionless length variable for speciesi - H _i Dimensionless total length parameter for speciesi. - k _li Liquid phase mass transfer coefficient for speciesi, l/sec - K _li Overall liquid phase mass transfer coefficient for speciesi. l/sec - k _si Solid phase mass transfer coefficient for speciesi, l/sec - K _si Overall solid phase mass transfer coefficient for speciesi. l/sec - L Total bed height, m - Q _i Concentration of speciesi in the adsorbent. mol/g solid - t Absolute time, second - V Linear superficial flow rate, m/see - X _i Normalized liquid phase i species concentration - Y _i Normalized liquid phasei species concentration - Z Axial distance of the bed, m     

Relative Stability of closo‐closo,closo‐nido,and nido‐nido Macropolyhedral Boranes: The Role of Orbital Compatibility

The concept of orbital compatibility is used to explain the relative energies of different macropolyhedral structural patterns such as closo‐closo, closo‐nido, and nido‐nido. A large polyhedral borane condenses preferentially with a smaller polyhedron owing to orbital compatibility. Calculations carried out at the B3LYP/6‐31G* level show that the macropolyhedron closo(12)‐closo(6) is the most preferred structural pattern among the face‐sharing closo‐closo systems. The relative stabilities of four‐shared‐atom closo‐closo, three‐shared‐atom closo‐closo, three‐shared‐atom closo‐nido, edge‐sharing closo‐nido, and edge‐sharing nido‐nido structures are in accordance with the difference in the number of vertices of the individual polyhedra of the macropolyhedra. When the difference in the number of vertices of the individual polyhedra is large, the stability of the macropolyhedra is also large. Calculations further show that the orbital compatibility plays an important role in deciding the stability of the macropolyhedral boranes with more than two polyhedral units. The dependence of the orbital compatibility on the relative stability of the macropolyhedron varies with other factors such as inherent stability of the individual polyhedron and steric factors.     

TRIACYLGLYCERINES OF Ruta graveolens GROWN in vivo AND in vitro

The composition of triacylglycerines (TAG) from photosynthetic tissues ofRuta graveolensL. (Rutaceae) grownin vivoandin vitrowas studied with respect to chain length and unsaturation. Esterification of sn-2-glycerol by unsaturated acids is less selective underin vitrothanin vivoconditions. TAG of thein vitroculture have an elevated content of forms with oleinic acid in the sn-2-position.