鸭肝炎病毒基因组3′末端序列的克隆和分析

用3′RACE和RT-PCR扩增并克隆鸭肝炎病毒(Duck hepatitis virus,DHV)Ⅰ型毒株C80和Ⅰ型变异株E63的3′末端序列。分析结果显示,C80株和E63株基因组3′末端均包含1 359 nt的3D、终止密码子TGA、长314nt的3′UTR,而poly(A)尾分别含18个A和19个A。由2株DHV 3D核苷酸序列所推导的3D蛋白均含453个氨基酸,均包含KDELR、DxxxxD、GxxCSGxxxTxxxNS、YGDD和FLKR等小RNA病毒RNA聚合酶的特征基序,该结果进一步证实Ⅰ型DHV属于小RNA病毒科的成员。两株DHV与小RNA病毒科9个已知属之间3D蛋白的氨基酸序列同源性为16%~37%,介于属间3D蛋白的氨基酸序列同源性范围(18%~60%)之内;此外,Ⅰ型DHV的3′UTR在小RNA病毒科是最长的。用3D蛋白进行进化分析的结果表明,Ⅰ型DHV可能属于小RNA病毒科的一个独立的病毒属。     

猪繁殖与呼吸综合征病毒S1株基因组序列测定和分析

应用RT-PCR方法分段扩增出PRRSV上海分离株S1毒株的4条基因大片段,扩增后的产物分别克隆于pCR-XL-TOPO载体鉴定后测序,同时应用RACE方法对S1毒株的3'和5'基因末端进行了成功的扩增并克隆于pMD-18T载体进行测序,按顺序将这些序列进行拼接得到PRRSV S1株全基因组cDNA序列.测序结果表明PRRSV S1株基因组全长15441 bp,包含9个开放式阅读框,5'UTR含有189nt,3'端UTR含有181nt,其中包含30nt Poly (A).基因组序列分析结果显示该病毒与ATCC VR-2332和BJ-4分离株的核苷酸同源性分别99.5%和99.6%.与另一国内分离株CH-1a的核苷酸同源性为90.8%.     

我国禽脑脊髓炎病毒分离株全基因组的测定

测定了我国禽脑脊髓炎病毒(avian encephalomyelitis virus,AEV)分离株L2Z株的全基因组核苷酸序列.该病毒株的3′和5′非编码区核苷酸序列用3′和5′RACE(cDNA末端快速扩增)法获得.基因组全长为7 059个核苷酸残基,包括494个核苷酸残基的5′非编码区、6 402个核苷酸残基的开放阅读框和136个核苷酸残基的3′非编码区及poly(A)尾巴.与已发表的AEV疫苗株1 143的基因组序列比较发现,它们之间核苷酸和氨基酸的同源性分别为98%和97.6%.结构蛋白(VP1～VP4)中,主要宿主保护性免疫原蛋白VP1氨基酸之间差异较小.与小RNA病毒科其它病毒属相比,在非结构蛋白3D中,预测的8个RNA依赖性RNA聚合酶主要结构域中的4个高度保守.从而进一步确认了AEV的分子特性.     

黄瓜花叶病毒香蕉株系(CMV-Xb)RNA3 cDNA的克隆和序列分析

通过RT-PCR方法,设计两对引物,克隆了黄瓜花叶病毒香蕉株系(CMV-Xb)RNA3,并进行了核苷酸和蛋白质水平上的分析.结果表明Xb株系RNA3全长2205nt,具有两个蛋白编码阅读框架(ORF),其中5'端(97～936nt)编码一个279aa的3a蛋白;3'端(1225～1871nt)编码一个218aa的CP蛋白.5'非编码区域为96nt;基因间隔区(IR)长288nt;3'NR含有324nt.通过与亚组Ⅱ其它株系RNA3核苷酸和所编码产物推导的氨基酸序列分析发现,亚组Ⅱ株系无论在编码区还是非编码区的核苷酸同源性都相对较高;亚组Ⅱ株系在进化过程中具有连续性.     

我国登革3型病毒广西80-2株基因组全序列分析

对我国登革 3型病毒 80 2株基因组进行全序列测定 ,为了解其基因组结构与功能的关系提供依据 .根据登革 3型病毒H87株的序列设计并合成引物 ,应用RT PCR和RACE法 ,对 80 2株基因组RNA进行扩增、克隆测序后获得我国登革 3型病毒广西株基因组序列 .该株病毒基因组全长10 696nt ,不含poly(A)尾 ,4种碱基数分别为A :3 4 3 7,C :2 2 15,G :2 773 ,U :2 2 71.包含一个读码框架 ,自 95至 10 2 67位 ,共 10 170个碱基 ,编码 3 3 90个氨基酸 ,5′和 3′非编码区长度分别为 94nt和4 3 2nt.与H 87株比较 ,核苷酸和氨基酸序列同源性均在 99%以上 ,有 2 8个碱基发生改变 ,其中 2 6个碱基突变发生在读码框架内 ,碱基转换 18个 ,颠换 10个 ;碱基突变引起 14个氨基酸的改变 .80 2株与H87株病毒的基因组全序列同源性高 ,变异度小 .     

黑蜂王台病毒中国BQCV-JL1株5'UTR的序列分析

蜜蜂黑蜂王台病毒(Black queen cell virus,BQCV)是引起蜜蜂蜜蜂黑蜂王台病的病原体,主要侵染蜜蜂蜂王幼虫。BQCV基因组为单正链RNA,包括5'端的ORF 1和3'端的ORF 2两个开放阅读框。分别编码非结构蛋白和结构蛋白。本实验室首次成功分离鉴定得到中国首株BQCV毒株,命名为中国BQCV-JL1株。该株全长为8 358 nt。【目的】本文主要研究该株核苷酸序列位置为1~1 124 nt的片段,该段序列的1~545 nt为该毒株的5'UTR区域。【方法】通过Blast及DNAStar等软件对核苷酸及氨基酸序列进行分析。【结果】5'UTR区域的同源性为94%~99%,为高度保守序列。【结论】经Mega5软件作多重序列对比分析得知,该中国BQCV-JL1株的5'UTR区域与其他毒株差异性很大,经分析推断原因为碱基的缺失与碱基置换。     

黄瓜花叶病毒香蕉株系（CMV—Xb）RNA3cDNA的克隆和序列分析

通过PR－PCR方法,设计两对引物,克隆了黄瓜花叶病毒香蕉株系（CMV-Xb)RNA3,并进行了核苷酸和蛋白质水平上的分析,结果表明Xb株系RNA3全长2205nt,具有两个蛋白编码阅读框型架（ORF）,其中5'端（97－936nt)编码一个279aa的3a蛋白;3'端（1225－1871nt)编码一个2188aa的CP蛋白。5'非编码域为96nt;其因间隔区（IR）长288nt;3'NR含有324nt。通过与亚组Ⅱ其它株系RNA3核苷酸和所编码产物推导的氨基酸序列分析发现,亚组Ⅱ株系无论在编码区还是非编码区的核苷酸同源性都相对较高;亚组Ⅱ株系在进化过程中具有连续性。     

一株辛德毕斯病毒的基因组序列测定及分析

目的：对引进的一株辛德毕斯病毒的基因组序列进行测定,阐明其与已报道毒株序列的关系。方法：对辛德毕斯病毒基因组编码区进行分段RT-PCR扩增,对非编码区采用RACE法进行扩增,将扩增产物直接进行测序,应用DNAStar软件将测序结果拼接得到基因组序列,采用MEGA3.1软件对9株辛德毕斯病毒基因组序列进行系统进化发生树的构建。结果与结论：此株辛德毕斯病毒基因组共11663nt,编码3745个氨基酸残基,其中5＇端的2/3基因组编码4种非结构蛋白NSp1、NSp2、NSp3和NSp4,3＇端的1/3基因组编码5种结构蛋白E1、E2、E3、6K和C;结构基因和非结构基因之间有48nt的连接区为非翻译区;病毒基因组5＇末端和3＇末端分别有59、318nt的非编码区;序列同源性分析结果表明,此株病毒与S.A.AR86株的同源性最高,两者核苷酸序列的同源性为99.7%,氨基酸序列的同源性为99.6%,而与本室保存的另一辛德毕斯病毒MEI株的遗传进化关系稍远,系统进化发生树处于不同分支上。     

我国分离的盖塔病毒衣壳蛋白基因和3'非翻译区分子特征研究

对我国海南省和河北省分离到的3株盖塔病毒(GETV)(M1、HB0215-3和HB0234)进行衣壳蛋白基因和3'UTR区序列测定,并分析比较该病毒的分子生物学遗传特征.首先应用逆转录聚合酶链反应扩增出病毒衣壳蛋白基因和3'UTR片段,纯化后连接到载体中进行测序,然后用Clastal X和DNASTAR软件对测定的核苷酸和推测的氨基酸序列进行比较分析,用MEGA软件绘制系统发生树.3株病毒衣壳蛋白基因分别由801、804和804个核苷酸组成,分别编码267、268和268个氨基酸,3株病毒之间核苷酸和氨基酸序列同源性为97.6%～100%和97.8%～100%,与其他GETV分离株核苷酸同源性在95.4%～99.6%之间.3株病毒3'UTR分别由411、401和401个核苷酸组成,发现中国株存在10个(45～54位)核苷酸缺失和2个(64位、148位)特有的核苷酸位点.进化分析表明盖塔病毒之间的进化关系与分离年代相关,中国境内流行的盖塔病毒是相对独立的一个类群.     

简化cDNA末端快速扩增技术测定基因Ⅲ、Ⅵb和Ⅶ d型新城疫病毒基因组末端序列及分析

[目的]简化cDNA末端快速扩增技术(Rapid amplification of cDNA ends,fLAcE)流程,测定基因Ⅲ、VIb)和VIId型新城疫病毒(Newcastle disease virus,NDV)基因组两侧末端序列,并对NDV的leader和trailer进行分析.[方法]利用T4 RNA连接酶将特定寡聚核苷酸片段的连接于病毒基因组RNA和eDNA,再利用RT-PCR或PCR方法对病毒基因组的末端进行快速的扩增.[结果]建立一套操作简单、低成本、可重复性高的RACE方法,测定了三种基因型5株NDV 3'末端leader和5'末端trailer序列比对分析.[结论]本实验测定的鹅源VII型毒株JS/7/05/Ch基因组的15,184 nt由一个T变为了C,5'端trailer与3'端leader的连续互补序列由8 nt变为12 nt,而其它4株基因Ⅲ型和VI型NDV均未发现该突变.通过RNA的二级结构分析,NDV基因组和反向基因组RNA的3'末端形成一个发卡结构.JS/7/05/Ch等3株NDV U→C(T→C)的突变位于发卡环上,不影响二级结构的形成,发卡环的RNA序列突变为3'-UCUC-5',与基因组3'端发卡环的3'-UCUUA-5'相似,推测可能影响了基因组RNA的复制速度.     

Accurate quantification of basal plasma levels of 3-nitrotyrosine and 3-nitrotyrosinoalbumin by gas chromatography-tandem mass spectrometry

Measurement of 3-nitro-L-tyrosine (NO(2)Tyr) and protein-related 3-nitro-L-tyrosine in human plasma is associated with numerous methodological problems which result in highly divergent basal plasma levels often ranging within two orders of magnitude. Recently, we have described an interference-free GC-tandem MS-based method for NO(2)Tyr which yielded the lowest basal plasma NO(2)Tyr levels reported thus far. This method was extended to quantify protein-associated 3-nitrotyrosine and in particular 3-nitrotyrosinated albumin (NO(2)TyrALB) in human plasma. NO(2)TyrALB and albumin (ALB) were extracted from plasma by affinity column extraction and digested enzymatically at neutral pH. 3-Nitro- L-[2H(3)]tyrosine was used as internal standard. In plasma of 18 healthy young volunteers the molar ratio of NO(2)TyrALB to albumin-derived tyrosine (TyrALB), i.e. NO(2)TyrALB/TyrALB, was determined to be 1.55+/-0.54x1:10(6) (mean+/-SD). The plasma concentration of NO(2)TyrALB was estimated as 24+/-4 nM. The NO(2)Tyr plasma levels in these volunteers were determined to be 0.73+/-0.53 nM. In the same volunteers, NO(2)TyrALB/TyrALB, NO(2)TyrALB and NO(2)Tyr were measured 15 days later and the corresponding values were determined to be 1.25+/-0.58x1:10(6), 25+/-6 nM and 0.69+/-0.16 nM. For comparison, NO(2)Tyr and NO(2)TyrALB were measured in six plasma samples from healthy volunteers by GC-MS and GC-tandem MS. Different values were found for NO(2)Tyr, i.e. 5.4+/-2.8 versus 2.7+/-1.5 nM, and comparable values for NO(2)TyrALB/TyrALB, i.e. 0.5+/-0.2x1:10(6) versus 0.4+/-0.1x1:10(6), by these methods. The ratio of the values measured by GC-MS to those measured by GC-tandem MS were 2.9+/-3.1 for NO(2)Tyr and 1.2+/-0.2 for NO(2)TyrALB/TyrALB. The present GC-tandem MS method provides accurate values of NO(2)Tyr and NO(2)TyrALB in human plasma.     

Binding of isolated 3T3 surface membranes to growing 3T3 cells and their effect on cell growth

We have quantitated by autoradiography the binding of [¹²⁵I]labeled 3T3 plasma membrane fragments to 3T3 cells growing on the surface of plastic dishes; ie, the same conditions in which these membranes specifically arrest the growth of 3T3 cells early in the G₁ phase of the cell cycle. We have been able to demonstrate that binding of membranes to cells is coincidental with the expression of the growth inhibitory activity of protein(s) present in the membrane fragments. Treatments that reduce binding (heat denaturation of the membranes or culture in the presence of high scrum) also reduce growth inhibitory activity. [¹²⁵I]labeled membranes bound to cells are located primarily on the cell surface (as determined by electron microscope autoradiography) and are exchangeable with unlabeled membranes. We conclude that binding of membranes to cells is necessary but may not be sufficient for the expression of the growth inhibitory activity of these membranes. This approach provides information not only on the average level of binding of membranes to cells, but also provides a quantitative assessment of the variation of the level of membrane to cell binding between different cells in the population.     

Quantitative studies of amino acid and growth factor requirements of transformed and nontransformed cells in high concentrations of serum of lymph

Summary The growth rate of spontaneously transformed BALB/3T3 cells is proportional to glutamine concentration between 50 and 400 μM, with little or no growth occurring in less than 50 μM glutamine. By contrast, nontransformed BALB/3T3 cells multiply, although slowly, with as little as 20 μM glutamine. Neither cell type depletes the medium of glutamine at the low concentrations. Cystine requirements of both cell types increase with serum concentration, probably due to the binding of half-cystine residues by the serum. Calf serum is a much more potent stimulator of cell multiplication than calf lymph, especially for the nontransformed cells. The rate of cell multiplication can be reduced by lowering the concentration of essential amino acids to the physiologic level found in body fluids, but the growth limitations can be fully compensated by simply raising the serum concentration. Growth factors may act by enhancing the utilization of amino acids, particularly of glutamine which is a required substrate for the first and chief regulatory steps of purine and pyrimidine synthesis. Lymph, which is coextensive with interstitial fluid in vivo, is poor in growth factors for the nontransformed BLAB/3T3 cells as well as for recently explanted mouse embryo cells, which raises questions of how normal cell growth is maintained in the body. This work was supported by USPHS grant CA-15744 from the Division of Extramural Activities, National Cancer Institute; by American Cancer Society Research Development Program grant RD-231; and by The Council for Tobacco Research grant 1948.     

Strain differences in the induction of soluble and microsomal enzymes by phenobarbital and 3-methylcholanthrene

The ability of phenobarbital and 3-methylcholanthrene (3MC) to induce liver microsomal and soluble enzymes was compared in Sprague-Dawley and Long-Evans rats. 3MC increased the V for the aniline hydroxylase and stimulated the formation of the hemoprotein P₄₄₈ to a similar extent in the 2 strains of rats. On the other hand phenobarbital increased the V for the microsomal enzyme aniline hydroxylase and aminopyrine demethylase and enhanced the activity of the soluble enzyme aldehyde dehydrogenase only in Sprague-Dawley rats. It induced a more marked increase of cytochrome P₄₅₀ in the Sprague-Dawley than in the Long-Evans strain.     

Inhibition of ribonucleotide reductase by naturally occurring quinols from spores of Agaricus bisporus

gamma-L-glutaminyl-4-hydroxybenzene, a stable phenol found in high concentrations in the gill tissue of the common mushroom, Agaricus bisporus, was shown to be capable of selectively inhibiting DNA synthesis in L1210 leukemia cells. Studies with isolated enzymes and permeabilized L1210 cells revealed that this compound inhibits ribonucleotide reductase ( RNR ) but has no effect on DNA polymerase. The results indicated a good correlation between the inhibition of DNA synthesis and the ability of this compound to inhibit RNR . The concentration of glutaminyl-4-hydroxybenzene required to elicit these inhibitory effects has physiological relevance to the gill tissue during the prodromal period of sporulation.     

AFM对3T3-L1前脂细胞及其骨架的可视化研究

目的:为脂肪细胞分化提供数据,加深对3T3-L1细胞分化机制的了解.方法:应用AFM对3T3-L1前脂细胞的形貌、超微结构、机械性能和细胞骨架进行了可视化研究.结果:3T3-L1细胞舒展,伪足丰富,膜表面有大小不一的斑块和突起.通过统计分析得出3T3-L1细胞的高低差,均方根粗糙度、平均粗糙度和平均高度分别为622.3nm、77.34nm、55.80nm、393.1nm;AFM针尖与细胞膜表面的相对粘弹力为95.10±19.41pN,平均硬度为2.36±0.39mN/m,杨氏模量为4.85±0.99kPa.AFM对3T3-L1细胞骨架成像,观察到骨架南排列整齐的大纤维束和细小的微纤维以及颗粒状蛋白组成,形成网络结构.结论:细胞形貌结合细胞的机械性能可知3T3-L1细胞生长状态良好,细胞的移动迁移能力强.     

鼠源成纤维细胞生长因子-21对脂肪细胞糖代谢的作用

成纤维细胞生长因子-21(FGF-21)是FGF家族的成员之一．近年发现FGF-21是一种新的代谢调节因子．从小鼠肝脏克隆FGF-21 cDNA,经测序正确后亚克隆至具有羟胺切割位点的小泛素相关修饰物表达载体上,转化宿主菌Rosetta,得到的转化子经IPTG诱导后获得稳定、高效、可溶的表达产物．表达产物经羟胺切割、透析、复性、柱层析纯化后,在每升宿主菌中可获得4 mg纯度为95%的成熟鼠源FGF-21蛋白,利用葡萄糖氧化酶-过氧化物酶(POD-GOD)法在小鼠3T3-L1脂肪细胞中进行生物学活性检测．结果表明,鼠源FGF-21具有促进脂肪细胞吸收葡萄糖的作用,短期作用(1 h)与胰岛素相似,长期作用(8和12 h)明显优于胰岛素．这一结果为以鼠源FGF-21为模型进一步研究FGF-21的生物学活性及其在糖代谢方面的作用机理奠定了基础．     

The mutational spectrum of procarbazine in Drosophila melanogaster.

The antineoplastic agent Procarbazine was tested for the induction of genetic damage in Drosophila melanogaster. The compound was administered to adult males by oral application. The following types of genetic damage were measured: (1) sex-linked recessive lethals; (2) dominant lethals; (3) total and partial sex-chromosome loss; and (4) translocations. Procarbazine is highly mutagenic in causing recessive lethal mutations in all stages of spermatogenesis. In sperm a clear-cut concentration-effect relationship is not apparent, but in spermatids such a relationship is obtained for mutation induction at low levels of procarbazine exposure, while at high concentrations the induction of recessive lethals is not a function of concentration. A low induction of total sex-chromosome loss (X,Y) and dominant lethals was observed in metabolically active germ cells (spermatids), but procarbazine failed to produce well-defined breakage events, such as partial sex-chromosome loss (YL,YS) and II-III translocations. The results obtained in Drosophila melanogaster are discussed and compared with the mutational pattern reported in the mouse after procarbazine treatment.     

拟南芥IQM3基因的表达分析及其突变体的鉴定

对拟南芥(Arabidopsis thaliana)IQM3基因的功能进行了分析.结果表明,推定IQM3的启动子中存在多种光、非生物胁迫和植物激素反应的顺式作用元件,可能参与植物对环境变化的反应.RT-PCR分析表明,IQM3在拟南芥莲座叶、花序叶、茎、花和根中的表达较强,但在荚果中的表达很弱;IQM3基因的T-DNA插入突变体iqm3-1和iqm3-2分别是功能缺失和超表达突变体,对这些突变体的表型分析表明,IQM3基因与种子萌发及幼苗子叶膨大有密切关系.     

La(NO3)3浸种对镉胁迫下油菜种子萌发及幼苗生长的影响

通过水培实验研究了La(NO3)3浸种对镉胁迫下油菜(Brassicanapus)种子萌发及幼苗生长的影响。结果表明,当镉浓度≤10mg·L-1时,La(NO3)3浸种(0～50mg·L-1)能提高油菜种子的活力,促进油菜幼苗的生长,并提高脂肪酶的活性和幼苗根细胞有丝分裂指数。其中以10mg·L-1La(NO3)3浸种处理效果最佳,与对照相比,种子活力指数及油菜幼苗各生长指标显著提高,脂肪酶活性增加40.41%～65.09%,幼苗根细胞有丝分裂指数增加62.76%～77.02%。当镉浓度>10mg·L-1时,La(NO3)3浸种对镉胁迫的缓解效用明显减弱,与对照相比,仅脂肪酶活性显著提高,其它指标无明显变化。