The extremo-α-carbonic anhydrase (CA) from Sulfurihydrogenibium azorense,the fastest CA known,is highly activated by amino acids and amines

The α-carbonic anhydrase (CA, EC 4.2.1.1) from the extremophilic bacterium Sulfurihydrogenibium azorense (SazCA) was recently shown to be the fastest CA known. Here we investigated this enzyme for its activation with a series of amino acids and amines. The best SazCA activators were d-Phe, l-DOPA, l- and d-Trp, dopamine and serotonin, which showed activation constants in the range of 3–23 nM. l- and d-His, l-Phe, l-Tyr, 2-pyridyl-methylamine and L-adrenaline were also effective activators (K_As in the range of 62–90 nM), whereas d-Dopa, d-Tyr and several heterocyclic amines showed activity in the micromolar range. The good thermal stability, robustness, very high catalytic activity and propensity to be activated by simple amino acids and amines, make SazCA a very interesting candidate for biomimetic CO₂ capture processes.     

Healthcare-associated (HA) and community-associated (CA) methicillin resistant Staphylococcus aureus (MRSA) in Bangladesh – Source,diagnosis and treatment

Methicillin-resistant Staphylococcus aureus (MRSA) has long been a common pathogen in healthcare facilities, but now, it has emerged as a problematic pathogen in the community setting as well. This study reported source, diagnosis and treatment of HA-MRSA and CA-MRSA.A total of sixty-five clinical samples (urine, pus, wound swab) were collected from clinical origin of Dhaka city, Bangladesh. All the isolates were tested phenotypically by conventional methods and genotypically by PCR targeting nuc, pvl and mecA genes. Finally sequencing was carried out for pvl gene to know the mutagenic variation or any amino acid changes in pvl gene. Chi square test was employed for statistical analysis. Patients of age group 51–60?years are more susceptible (46.15%) to MRSA, CA-MRSA or HA-MRSA infection. Female are (32.30%) more susceptible to MRSA infection. Among 65 isolates 53 isolates identified phenotypically as S. aureus. These were positive for amplification of nuc (270?bp) gene of S. aureus. Moreover, among 53 isolates 33 phenotypically considered as MRSA and 38 (72%) showed positive amplification for mecA (162?bp) gene. Among 38 MRSA isolates 22 (57.89%) confirmed as CA-MRSA and 16 (42.10%) as HA-MRSA. Finally, sequence analysis for lukS/F-PV genes from 4 representative isolates detected a new single nucleotide polymorphism in comparison with the control sequence. However, no amino acid changes were found. Statistical analysis showed HA-MRSA isolates were more commonly found in urine sample and CA-MRSA in pus and wound swab. CA-MRSA isolates were more resistant to tested antibiotics than HA-MRSA.     

Changes in the expression of serum markers CA242, CA199, CA125, CEA, TNF-α and TSGF after cryosurgery in pancreatic cancer patients

The presence of serum tumor markers, carbohydrate antigen 242 (CA242), carbohydrate antigen 199 (CA199), carbohydrate antigen 125 (CA125), carcinoembryonic antigen (CEA), tumor-supplied group of factors (TSGF) and tumor necrosis factor-α (TNF-α), is closely associated with invasion and metastasis of many malignancies. The expression of these markers were measured in serum taken from 37 pancreatic cancer patients prior to treatment. Levels of CA242, CA199, CA125, CEA and TNF-α expression correlated with tumor size, clinical stage, tumor differentiation, lymph node and liver metastasis (P < 0.05). One month after cryosurgery, serum levels of these markers were significantly reduced compared with levels prior to cryosurgery (P < 0.05), whereas there was no significant difference was found between serum levels before and after chemotherapy (P > 0.05). Thus, cryosurgery is more effective than chemotherapy for decreasing CA242, CA199, CA125, CEA, TSGF and TNF-α serum levels in these patients.     

Revision of the lectotype ofFavreina salevensis (Paréjas) (Crustacea,Decapoda) and description of favreine form-species from the Jurassic and Cretaceous of Scotland,Portugal, Yougoslavia and Pakistan

The lectotype ofFavreina salevensis (Paréjas) is re-examined and illustrated and the following new favreine form-species proposed:Favreina guinchoensis from the Upper Jurassic of Portugal,Favreina njegosensis andFavreina dinarica from the Neocomian of the Dinarids, andFavreina eiggensis from the Bathonian of the Inner Hebrides, Scotland.Favreina murciensis Cuvillier, Bassoulet & Fourcade is recorded from the Jurassic of Pakistan.     

Dis-orienting Paraphilias? Disability, Desire, and the Question of (Bio)Ethics

In 1977 John Money published the first modern case histories of what he called ‘apotemnophilia’, literally meaning ‘amputation love’ [Money et al., The Journal of Sex Research, 13(2):115–12523, 1977], thus from its inception as a clinically authorized phenomenon, the desire for the amputation of a healthy limb or limbs was constituted as a sexual perversion conceptually related to other so-called paraphilias. This paper engages with sex-based accounts of amputation-related desires and practices, not in order to substantiate the paraphilic model, but rather, because the conception of these (no doubt) heterogeneous desires and practices as symptoms of a paraphilic condition (or conditions) highlights some interesting cultural assumptions about ‘disability’ and ‘normalcy’, their seemingly inherent (un)desirability, and their relation to sexuality. In critically interrogating the socio-political conditions that structure particular desires and practices such that they are lived as improper, distressing and/or disabling, the paper constitutes an exercise in what Margrit Shildrick [Beyond the body of bioethics: Challenging the conventions. In M. Shildrick and R. Mykitiuk (Eds.), Ethics of the body: Postconventional challenges (pp. 1–26). New York: MIT Press, 2005] refers to as “postconventional ethics”.     

Dioxo-, oxothio- and dithio-tungsten(VI) and tungsten(V) complexes of the ligand N,N′-Dimethyl-N,N′-bis(2-mercaptophenyl)ethylenediamine

Synthesis of complexes cis,cis-W^VOXL (X=Cl, NCS), cis,trans-W^VOXL (X=Cl, OPh, SPh) and cis,trans-W^VIE₂L (E₂=O₂, OS, S₂) of the title ligand LH₂ are reported. cis,cis-W^VOCIL crystallises in space group P2₁/c with a=13.6541(9) Å, b=7.1555(11) Å, c=18.198(2) Å, β=95.294(6)°, V=1770.4(3) ų and Z=4 while the cis,trans isomer crystallises in space group P2₁/n with a=10.361(3) Å, b=14.141(4) Å, c=12.213(5) Å, β=102.56(3)°, V=1747(2) ų and Z=4. cis,trans-W^VIS₂L crystallises in space group P2₁/n with a=10.645(2) Å, b=13.929(2) Å, c=12.189(2) Å, β=103.14(2)°, V=1760(1) ų and Z=4. A short CH₃···Cl distance of 3.067(7) Å and an acute OWCl angle of 94.1(2)° are seen in cis,cis-W^VOClL, which converts to the cis,trans form on heating in MeCN. The latter isomer features a CH₃···Cl distance of 3.38(2) Å and an OWCl angle of 105.1(8)°. Electrochemical and EPR data are reported. In particular, cis,trans-W^VIE₂L may be reduced to [W^VE₂L]^–. EPR properties of these anions and those of complexes W^VOXL are discussed in the context of W^V centres in tungsten enzymes.     

Metabolic rates of Calathus melanocephalus (L.) (coleoptera,carabidae) from alpine and lowland habitats (jeløy and finse,norway and drenthe,the netherlands)

• 1.1. Metabolic rates (ml O₂/mg/hr) of three geographically separated populations of the carabid beetle Calathus melanocephalus L. (Finse and Je 10y, Norway and Drenthe, The Netherlands) were measured and compared by ANCOVA.
• 2.2. No significant relationship (P > 0.05) between metabolic rates and body weight or sex of the animals were found.
• 3.3. Individuals mostly acclimated to low temperatures by increased metabolic rates and in the opposite direction to higher temperatures. Individuals collected in early summer also showed higher metabolic rates than those caught later in the autumn.
• 4.4. Contradicting the theory of metabolic cold adaptation, beetles from The Netherlands had the highest metabolic rates, beetles from Finse intermediate rates and beetles from Jeløy the lowest rates.
• 5.5. No significant relation were found between geographical origin of the beetles and their respective chill-coma temperature.

     

Observations on the distribution and relative abundance of the scyphomedusan Chrysaora hysoscella (Linné, 1766) and the hydrozoan Aequorea aequorea (Forskål, 1775) in the northern Benguela ecosystem

Observations on the abundance of medusae at the surface were conducted in the northern Benguela ecosystem, over the period August 1997–June 1998. The results suggest that Chrysaora hysoscella is found inshore, whereas Aequorea aequorea tends to be found offshore. Although these relative observations are subject to bias caused by seasonal changes in the survey area, they are generally supported by the results of correlation analyses, and by the results of a more quantitative, cross-shelf trawl survey. Both species of medusae display marked patchiness, and can be very abundant. They appear to have mostly non-overlapping patterns of distribution in the upper layers of the water column, and so are able exert a consistent predation pressure across the width of the continental shelf. The estimates of biomass obtained are used as input variables to existing models of energy flow within the ecosystem.     

Comparison of the directionality of the halogen,hydrogen, and lithium bonds between HOOOH and XF (X = Cl,Br, H,Li)

Detailed electrostatic potential (ESP) analyses were performed to compare the directionality of halogen bonds with those of hydrogen bonds and lithium bonds. To do this, the interactions of HOOOH with the molecules XF (X?=?Cl, Br, H, Li) were investigated. For each molecule, the percentage of the van der Waals (vdW) molecular surface that intersected with the ESP surface was used to roughly quantify the directionality of the halogen/hydrogen/lithium bond associated with the molecule. The size of the region of intersection was found to increase in the following order: ClF?<?BrF?<?HF?<?LiF. The maximum ESP in the region of intersection, V _{S, max}, was observed to become more positive according to the sequence ClF?<?BrF?<?HF?<?LiF. For ClF and BrF, the positive electrostatic potential was concentrated in a very small region of the vdW molecular surface. On the other hand, for HF and LiF, the positive electrostatic potential was more diffusely scattered across the vdW surface than for ClF and BrF. Also, the optimized geometries of the dipolymers HOOOH···?XF (X?=?Cl, Br, H, Li) indicated that halogen bonds are more directional than hydrogen bonds and lithium bonds, consistent with the results of ESP analyses.

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Graphical abstract Electrostatic potential (ESP) contour maps in the xz plane of ClF and BrF

     

Kubergandian (Roadian,Middle Permian) of the Lycian and Aladağ Nappes (Southern Turkey)

The Ni?angahtepe Formation (Teke Dere unit) in the Lycian Nappes, and reworked pebbles and blocks from the Late Triassic Gevne Formation in the Alada? unit (both in Southern Turkey), present a well-developed Kubergandian microfauna and microflora found for the first time in this area. The following cyanobacterial and algal taxa are newly established: Clinortonella nov. gen., Ramovsia lyciana nov. sp., and Kantia? guevenci nov. sp.; some Cancellina and Armenina are revised. These Kubergandian faunas and floras present strong palaeobiogeographical affinities with the Eurasian southern margin (northern Palaeotethyan border). The Teke Dere unit represents an accretionary prism/fore-arc sequence containing different parts of the Palaeotethyan succession. The Late Triassic Gevne Formation marks the Eo-Cimmerian unconformity related to the closure of the Palaeotethys between the Taurus and Anatolian terranes.     

Revision of the rhinoceros remains (Rhinocerotidae,Mammalia) from the late Pliocene of Etouaires (Auvergne,France) and the morphological distinction between the postcranial bones of Stephanorhinus elatus and S. etruscus

This work revises the rhinoceros remains from the well-known early Villafranchian locality of Étouaires (Auvergne, France), which have been collected on multiple occasions since the late 18th century. The species Stephanorhinus elatus and S. etruscus are present, both represented mainly by postcranial elements. To identify them, a detailed preliminary analysis of the morphological differences between the postcranial skeletons of the two species has been undertaken, using the material from Vialette (Haute-Loire, early Villafranchian) and Senèze (Haute-Loire, early late Villafranchian) as comparison for S. elatus and S. etruscus respectively, plus some specimens of S. etruscus from Upper Valdarno (Tuscany, middle Villafranchian). These localities have been chosen because they all yielded only one of the two species. The morphological distinction between the two species is not easy, since the interspecific variability often overlaps and includes polymorphic characters. However, a few diagnostic characters are described, and intra-specific variability has been investigated as much as possible with the fossil material under investigation.     

Ultrastructure of the larval stemmata,the stemmata nerves and the optic neuropils of the larval cotton bollworm,Heliothis armigera (Hübner) (Lepidoptera : Noctuidae)

Ultrastructure of stemmata (larval eyes), stemmatal nerves, and the optic neuropils of 5th-instar larvae of cotton bollworm, Heliothis armigera (Hübner) (Lepidoptera : Noctuidae), were examined with scanning and transmission electron microscopes. Six stemmata are on each side of the head. Each stemma consists of 7 retinula cells arranged into 2 tiers. Stemmata I and II have 4 distal retinula cells and 3 proximal cells, the other 4 stemmata (III–IV) have 3 distal cells and 4 proximal cells. Stemmata I and IV have a short proximal rhabdom and the rhabdomere of each proximal cell has its microvilli projecting in only one direction. On the other hand, each stemma (in stemmata II–V) has a long proximal rhabdom and the rhabdomere of each proximal cell has microvilli pitched in several different directions relative to the horizontal plane. An axon projects proximally from each retinula cell body. The stemmatal nerve is composed of the 42 retinular axons from all of the 6 stemmata on the same side of the head. Each stemmatal nerve projects to the ipsilateral optic neuropil. Axons from each stemma are in a fasicle (within the stemmatal nerve), which consists of 7 axons, 3–4 of them are thick and terminate synaptically in the proximal neuropil; the others are thinner and terminate in the distal neuropil. Organelles, particularly lysosomes, undergo ultrastructural transformations relative to ambient light levels. The functional significance of abovementioned structures are discussed in light of current knowledge.     

Purification,characterization, and comparison of anα-glucosidase (endo-oligo-1, 4-glucosidase) from the mesophileBacillus subtilis and the obligate thermophileBacillus caldolyticus

Thep-nitrophenyl--d-maltoside hydrolyzing-glucosidase from the mesophileBacillus subtilis 25S and the obligate thermophileBacillus caldolyticus C2 was purified, characterized, and compared in order to determine the molecular mechanisms that may confer thermostability of starch-degrading enzymes. Both enzymes showed endo-oligo-1,4-glucosidase activity owing to their identical hydrolysis of linear malto-oligosaccharides to maltose and glucose as determined by thin-layer chromatography. Neither enzyme showed activity againstp-nitrophenyl--d-glucopyranoside, maltose, isomaltose, isomaltotriose, or panose. The enzymes may tentatively be classified as a panose-producing pullulanase owing to their hydrolysis of pullulan. The 25S and C2 enzymes were composed of two identical subunits of M_r 55,000 and 60,000 respectively. Both the 25S and C2 enzymes have a pI of 4.85, pH optimum of 7.5 and 7.0, and K_m values for the chromogenic substratep-nitrophenyl--d-maltoside of 2.96 mM and 1.31 mM respectively. The 25S enzyme exhibited optimal activity between 35 and 37°C, and complete inactivation after 10 min at 45°C, while the C2 enzyme showed optimal activity at 60°C and retained 100% of initial activity at 60°C for 2 h. The C2 enzyme required a minimum of 0.02% 2-mercaptoethanol or 0.01 mM EDTA for thermostability. A comparison of the amino acid compositions showed an increase in the number of proline, alanine, and leucine residues for the thermostable C2 enzyme. These alterations in hydrophobicity may influence enzyme thermostability; this may be a factor in the design of engineered proteins for industrial use.Florida Agricultural Experiment Station Journal Series No. 9985     

A (U)MP2(full) and (U)CCSD(T) theoretical investigation into the substituent effects on the intermolecular T-shaped F–H…π interactions between HF and LBBL (L = ?H, ∶CO, :NN, –Cl, –CN and –NC)

The substituent effects on the intermolecular T-shaped F-H...π interactions are investigated between HF and LBBL (L = -H, : CO, :NN, -Cl, -CN and -NC) using the (U)MP2(full) and (U)CCSD(T) methods with the 6-311++G(2 d,p) basis set. The B ≡ B triple-bond contraction is found in the complexes with lone-pair-electron donors while the B = B double-bond is lengthened in the systems with the single-electron substituents upon complexation. The T-shaped F-H...π interaction energies follow the order of ClB = BCl...HF>HB = BH...HF>NNB ≡ BNN...HF>OCB ≡ BCO...HF>CNB = BNC...HF>NCB = BCN...HF. The electron-donating substituents : CO and :NN increases electron density of the B ≡ B triple bond by the delocalization interaction E ((2)) π ((CO/NN) → Lp(B)) while the electron-withdrawing substituents -CN and -NC decrease electron density of the B = B double bond by means of the π-π conjugative effect. The analyses of the APT atomic charge, "truncated" model, natural bond orbital (NBO), atoms in molecules (AIM) and electron density shifts reveal the nature of the substituent effect and explain the origin of the B ≡ B bond contraction.     

Heterozygosity and selective value: the case of the marine fish,Diplodus sargus (Linné, 1758)

A total of 842 white sea bream (Diplodus sargus), sampled in Banyuls-sur-Mer, were analysed to test 'genotype-phenotype' relationship for various characters related to the fitness. The results show significant differences (MLH and FIS) for the age according to the sex between females carrying out and not carrying out sexual inversion. This suggests an overdominance for old females and a genetic sex determination. The individuals laying very early during the period of reproduction are also differentiated from the individuals reproducing later in the season. These results suggest either a stable calendar of laying in time separating the individuals genetically reproducing precociously from the others and this by differential selection and/or genetic drift either a Wahlund effect among cohorts.     

The pigs and “Old World peccaries” (Suidae and Palaeochoeridae,Suoidea, Artiodactyla) from the Miocene of Sandelzhausen (southern Germany): phylogeny and an updated classification of the Hyotheriinae and Palaeochoeridae

The fossil remains of two species of Suoidea (Artiodactyla, Mammalia) from the Early/Middle Miocene locality of Sandelzhausen (MN5; Bavaria, Germany) are described. A skull and some isolated teeth and bones reveal hitherto unknown features of Schizoporcus muenzenbergensis, Schizoporcini, Taucanaminae, Palaeochoeridae (Old World peccaries), Suoidea. The phylogeny of the Taucanaminae is discussed and an updated classification of the Palaeochoeridae is presented. The new names Schizoporcus and Schizoporcini replace the junior homonyms Schizochoerus Crusafont and Lavocat (1954) and Schizochoerini Golpe-Posse (1974). Remains of several skulls and mandibles, over 50 associated tooth rows, over 300 isolated teeth, and over 200 bones, constitute one of the largest collections of a Miocene suid known, and are assigned to Hyotherium soemmeringi wylensis, Hyotheriini, Hyotheriinae, Suidae (pigs), Suoidea. Hyotherium is the oldest certain suid genus known and many assumed it to be one of the most primitive. While the postcranial bones of the Suidae and Palaeochoeridae differ in many ways, the bones of Hyotherium are already very similar in morphology to those of living pigs, although they are much more slender, suggesting that the genus was more fleet-footed. Features related to rooting behaviour indicate that Hyotherium was a more efficient rooter than Palaeochoeridae and living Dicotylidae, but not as efficient as living suids. The phylogeny of the Hyotheriinae is discussed. The subfamily is divided into Hyotheriini and Aureliachoerini, new tribe, and an updated classification is presented.     

The roles of the Chantransia phase of Lemanea (Lemaneaceae,Batrachospermales, Rhodophyta) and of the ‘Mushroom’ phase of Himanthalia (Himanthaliaceae,Fucales, Phaeophyta)

Summary

The life cycle of the Batrachospermales (freshwater florideophyte red such as Batrachospermum, Lemanea) is a shortened variant of the ‘normal’ marine florideophyte life cycle. The perennial Chantransia diploid phase is microscopic and encrusting. Each winter it produces one or more semi-erect haploid gametophytes by vegetative meiosis. Gamete production and fertilization is followed by production of diploid carposporophytes; these produce diploid carpospores which disperse, and regenerate the Chantransia phase. The question of the extent to which the Chantransia phase contributes resources to the gametophyte was approached by physiological-hydrodynamic modelling. These computations suggest that the photosynthetic rates in situ on an area basis are 20 times greater for the gametophyte than the Chantransia phase; this agrees with the observed ratios of peak biomass. The conclusion is that the Chantransia phase has a negligible role in provisioning the growing gametophyte, and that the role of the Chantransia phase is to occupy space with living biomass throughout the year, including exposure at summer drawdown, and (perhaps) by dispersal via production of monospores. A similar conclusion is arrived at on the basis of biomass data for the role of the perennial ‘mushroom’ phase of the semelparous marine Fucalean brown alga Himanthalia elongata in relation to the short-lived but much larger reproductive receptacles.     

Monte Carlo characterizations mapping of the (γ,n) and (n,γ) photonuclear reactions in the high energy X-ray radiation therapy

Aim

The aim of this work was to map the characteristics of (n,γ) and (γ,n) reactions in a high energy photon radiation therapy.

Background

Photoneutrons produced in the high energy X-Ray radiation therapy may damage patients and staff. It is due to high RBE of the produced neutrons according to their energy and isotropic emission. Characterization of the photoneutrons can help us in appropriate shielding.

Materials and methods

This study focused on the photoneutron and capture gamma ray phenomena. Characteristics such as dose value, fluence and spectra of both the neutrons and the by produced prompt gamma ray were described.

Results and discussion

Neutron and prompt gamma spectra in different points showed the neutrons to be thermalized when increasing the distance from the linac. Energy of the neutrons changed from about 0.6 MeV at the isocentre to around 10⁻⁰⁸ MeV at the outer door position. Although the neutrons were found as fast neutrons, their spectra showed they were thermal neutrons at the outer door position. Additionally, it was seen that the energy of the gamma rays is higher than the scattered X-ray energy. The energy of gamma rays was seen to be up to 10 MeV while the linac photons had energy lower than 1 MeV. Neutron source strength obtained in this work was in good agreement with the published data, which may be a confirmation of our simulation accuracy.

Conclusion

The study showed that the Monte Carlo simulation can be applied in the radiotherapy and industrial radiation works as a useful and precise estimator. We also concluded that the dose from the prompt gamma ray at the outer door location is higher than the scattered radiation from the linac and should be considered in the shielding.     

Checklist of the families Scathophagidae,Fanniidae and?Muscidae of Finland (Insecta,Diptera)

A revised checklist of the Scathophagidae, Fanniidae and Muscidae recorded from Finland is presented. Phaonia amicula Villeneuve, 1922 is noted from Finland for the first time.     

Hyobranchial and postcranial ontogeny of the temnospondylOnchiodon labyrinthicus (Geinitz, 1861) from Niederhäslich (Dohlen Basin, Autunian, Saxony)

Hyobranchium, postcranial skeleton, and developmental events during ontogeny of the temnospondylOnchiodon labyrinthicus from the Dohlen Basin (Autunian, Saxony) are described. At a skull length of approximately 20 mm, the scapulocoracoid appeared, but ossified very slowly. The ischium ossified distinctly later than the stout ilium and later than the scapulocoracoid. The stapes can be determined in specimens beyond 26 mm skull length, and the exoccipitals started to ossify probably at 40 mm, followed by the quadrate. Vertebral centra ossified in early juveniles at approximately 50 mm skull length. The larval hyobranchium with ossified basibranchial and ceratobranchials indicates strong suction feeding. The bony ceratobranchials were resorbed after the larval period. The poorly ossified postcranium suggests that juveniles lived semiterrestrially.