Juvenile Salmonid Utilization of Floodplain Rearing Habitat After Gravel Augmentation in a Regulated River

Gravel augmentation is used in sediment‐starved streams to improve salmonid spawning habitat. As gravel is added to river channels, water surface elevations may rise in adjacent areas, activating floodplain habitat at lower flows, and floodplains inundate more frequently, potentially affecting the quantity and quality of juvenile salmonid rearing habitat. We analysed 5 years of juvenile Chinook salmon Oncorhynchus tschawytscha and steelhead Oncorhynchus mykiss data from snorkel surveys before and after gravel augmentation in the Lower American River, a low‐gradient, highly regulated alluvial river in California's Central Valley. We measured the quality and quantity of rearing habitat (current velocity and areal extent of inundated riparian vegetation) following gravel placement and tested whether these factors affected juvenile abundance. Gravel augmentation increased floodplain extent by 3.7–19.8%, decreased average flow velocity from 1.6 to 0.3 m s^?1 and increased the amount of vegetative cover from 0.3% to 22.6%. Juvenile abundances increased significantly for both species following augmentation. However, the strength of the relationship between abundance and habitat variables was greater for smaller salmonids. These results suggest that, in addition to enhancing salmonid spawning habitat, gravel augmentation can improve rearing habitat where channel incision and/or regulated hydrographs disconnect floodplains from main river channels. Copyright © 2015 John Wiley & Sons, Ltd.     

JUVENILE SALMON RESPONSE TO THE PLACEMENT OF ENGINEERED LOG JAMS (ELJS) IN THE ELWHA RIVER,WASHINGTON STATE,USA

Engineered log jams (ELJs) are increasingly being used in large rivers to create fish habitat and as an alternative to riprap for bank stabilization. However, there have been few studies that have systematically examined how juvenile salmonids utilized these structures relative to other available habitat. We examined Chinook salmon (Oncorhynchus tshawytscha), coho salmon (O. kisutch) and trout (O. mykiss and O. clarki) response to the placement of engineered log jams (ELJs) in the Elwha River, Washington State, USA. We used summer snorkel surveys and a paired control‐treatment design to determine how engineered log jams in a large river system affect the density of juvenile salmon. We hypothesized that densities of juvenile salmonids would be greater in habitats with ELJs than in habitats without ELJs in the Elwha River and that this ELJ effect would vary by species and size class. Juvenile salmonid density was higher in ELJ units for all control‐treatment pairs except for one pair in 2002 and one pair in 2003. Positive mean differences in juvenile salmon densities between ELJ and non‐ELJ units were observed in two of four years for all juvenile salmon, trout greater than 100 mm and juvenile Chinook salmon. Positive mean differences occurred in one of 4 years for juvenile coho salmon and trout less than 100 mm. The results suggest that ELJs are potentially useful for restoring juvenile salmon habitat in the Elwha River, Washington State, USA. Copyright © 2011 John Wiley & Sons, Ltd.     

Large wood aids spawning Chinook salmon (Oncorhynchus tshawytscha) in marginal habitat on a regulated river in California

To determine whether large wood (LW, ≥1‐m length, ≥10‐cm diameter) plays a role in Chinook salmon (Oncorhynchus tshawytscha) redd (i.e. egg nest) placements in a regulated, Mediterranean‐climate, medium‐sized river (where channel width is less than the upper quartile of length of potential instream wood pieces), characteristics of 527 large wood pieces, locations of 650 redds, and mesohabitat delineations (riffle, run, glide, pool) were collected during a spawning season along a 7.7 km reach directly below Camanche Dam on the Mokelumne River, CA. LW was regularly distributed across the study reach an average 70 LW pieces km^‐1. Some LW clustering was evident at islands and meander bends. Spawners built 85% of redds within one average channel width (31 m) of LW. Spawners utilized LW within a 10 m radius 36% of the time in the upper 3 km rehabilitated reach, and 44% of the time in the lower 4.7 km marginal habitat reach. A greater percentage of LW was utilized in riffles in the upper 3 km reach where 90% of redds were built, while a larger percentage of spawners used LW in riffles in the lower 4.7 km reach. LW‐redd interactions occurred at greater rates than by random chance alone in the lower 4.7 km reach, which implies that LW aids spawning in marginal habitats. River managers and salmonid spawning habitat rehabilitation (SHR) projects should take LW additions into consideration as an important component of river rehabilitation. Copyright © 2010 John Wiley & Sons, Ltd.     

Performance of a prototype surface collector for juvenile salmonids at Bonneville Dam's first powerhouse on the Columbia River,Oregon

During April–July 2000, we radio‐tagged and released juvenile Chinook salmon (Oncorhynchus tshawytscha) and steelhead (Oncorhynchus mykiss) to evaluate a prototype surface flow bypass at Bonneville Dam on the Columbia River. The mock bypass, called a prototype surface collector (PSC), had six vertical slot entrances that were each 6 m wide and 12 m deep. The PSC was retrofitted to the upstream face of Bonneville Dam's First Powerhouse. Our objectives were to: (1) assess species‐specific differences in movement patterns and behaviour of fish within 6 m of the face of the PSC, (2) estimate the efficiency and effectiveness of the PSC and (3) evaluate factors affecting the performance of the PSC. We found that 60–72% of the fish, depending on species, detected within 6 m of the PSC entered it. Of the fish that passed the First Powerhouse at turbines 1–6, 79–83% entered the PSC. Diel period was a significant contributor to PSC performance for all species, and day of year was a significant contributor to PSC performance for subyearling Chinook salmon. The PSC was twice as effective (%fish/%flow) as the spillway, passing 2.5:1 steelhead and subyearling Chinook salmon and 2.4:1 yearling Chinook salmon per unit of water. If fully implemented, the PSC would increase the percentage of fish that pass the First Powerhouse through non‐turbine routes from 65–77% (without the PSC) to 76–85% (with the PSC), depending on species. Published in 2008 by John Wiley & Sons, Ltd.     

Experimental evaluation of fishway modifications on the passage behaviour of adult Chinook salmon and steelhead at Lower Granite Dam,Snake River,USA

Previous studies of Pacific salmonid passage over Snake River dams indicated slowed passage at transition pools, the transition area between the fishway entrance and the fish ladder. In 2001 and 2002, we conducted an experiment to determine if modified weirs affected adult salmon and steelhead passage times and route selection through the Lower Granite Dam transition pool. Fish attraction flows through the lower ladder weirs were experimentally increased using removable panels. During the experiment we monitored radio‐tagged adult Chinook salmon and steelhead to determine passage routes and times through the transition pool. The weir treatment increased the number of spring–summer Chinook salmon passing straight through the transition pool compared to those exiting the transition pool to the collection channel or tailrace. Mean passage times through the transition pool differed among routes and were significantly lower during treatment periods for the exit‐to‐collection channel route in spring‐summer Chinook salmon, but not for other routes. Passage times among routes differed in steelhead, but there was no evidence of treatment effects on route use or passage time. Fall Chinook exhibited similar trends in route use and passage time to spring–summer Chinook, but differences were not significant, perhaps because of relatively small sample size. Total dam passage times did not differ by treatment or route for any run. Fish depth during passage of the transition pool suggested that most fish passed through submerged orifices and supported the hypothesis that increased water velocity through these orifices caused the increase in straight‐through passage in spring–summer Chinook. Collectively, the results suggested the weir modifications provided improvement to passage through the transition pool for spring–summer Chinook and no evidence of negative effects on other runs. The results from this study were used to develop new design criteria and modifications of the Lower Granite Dam fishway. Copyright © 2006 John Wiley & Sons, Ltd.     

Juvenile masu salmon in a regulated river

We examined the relationship between the physical environment and habitat use of juvenile masu salmon, Oncorhynchus masou, in the Nobori River in Hokkaido, Japan to provide a perspective for the conservation of fish habitat in regulated streams. The study was undertaken during the autumn and winter, with an emphasis on the hierarchy of three spatial scales: microhabitat, channel‐unit and reach scales. The microhabitat‐scale analysis indicated juvenile masu salmon preferred a midstream habitat type, with a greater depth (Avg. ± SD: 35.4 ± 14.2 cm) and high (43.4 ± 23.1 cm s^?1) and uniform current velocities during the autumn, and a channel margin habitat type with a moderate current (about 20 cm s^?1) and submerged cover during winter. In addition, different cover types have different roles in determining juvenile salmon distributions during winter. Grass cover had extremely high carrying capacities, whereas coarse substrate cover provided winter habitat for larger juvenile salmon. Channel‐unit scale analyses showed that abundance of juvenile salmon tended to be higher in pools than runs in the autumn through winter. Reach‐scale analysis showed that abundance and mean body length of juvenile salmon significantly differed between differently regulated reaches during winter, associated with the dominant cover type in each reach. This study demonstrated that the habitat conditions determining juvenile masu salmon distribution differ according to the season and scale of analysis. Therefore, for conservation of fish communities, it is important to evaluate and conserve or create fish habitats in regulated reaches, with a focus on the hierarchy of spatial scales and seasonal differences. Copyright © 2007 John Wiley & Sons, Ltd.     

Increasing the availability and spatial variation of spawning habitats through ascending baseflows

Precipitation in fall and winter is important to recharge aquifers in Northern California and the Pacific Northwestern United States, causing the baseflow in rivers ascend during the time when Chinook salmon (Oncorhynchus tshawytscha) construct redds. Herein, we evaluate the availability of spawning habitats under a constant streamflow common in regulated rivers against ascending baseflows patterned from free‐flowing rivers. A binomial logistic regression model was applied to predict the suitability of redd locations based on physical characteristics. Next, two‐dimensional hydrodynamic habitat models were developed at two locations representing a broad range of channel forms common in large rivers. Hydrodynamic and habitat models were leveraged together to simulate the quality, amount, and spatial distribution of spawning habitat at a series of individual flow rates, as well as the combined effect of those flow rates through a spawning season with ascending baseflows. Ascending baseflows increased the abundance of spawning habitat over individual streamflows at a site where the river channel is confined by levee‐like features. However, improvements were greater at an unconfined site that facilitated lateral connectivity and greater expansion of wetted channel area as streamflows increased. Ascending baseflows provided spatial separation in preferred habitats over a spawning season, which may reduce the risk of superimposition among runs or among species. Ascending baseflows provided a benefit across the range of hydrologic regimes in a 100‐year gauge record ranging from 20% to 122% improvements in habitat area over low streamflows that are currently used to manage for spawning habitat. Although replicating natural flow regimes in managed systems can be impossible or impractical, these results demonstrate that incorporating elements of the natural flow regime like ascending baseflows can benefit the restoration and conservation of riverine species.     

Wild juvenile salmonid abundance in Wisconsin tributaries indicates limited contributions to Lake Michigan fisheries

Natural reproduction of salmonids occurs in many Lake Michigan tributaries, yet little is known about abundance and the potential contribution of wild fish hatching in Wisconsin tributaries. The objectives of our study were to determine if: 1) abundance of wild juvenile salmonids (primarily adfluvial rainbow trout, Oncorhynchus mykiss, referred to as steelhead) varied among selected Wisconsin streams based on available spawning and age-0 habitat; 2) stream temperature regimes could limit survival of juvenile salmonids, and 3) wild juvenile salmonids outmigrate from Wisconsin tributaries into Lake Michigan or larger tributaries. In 2016 and 2017, juvenile salmonid abundance was estimated in six Wisconsin tributaries to Lake Michigan by multiple-pass depletion sampling using backpack electrofishing. Habitat assessments included steelhead redd surveys, age-0 habitat surveys, and stream temperatures were monitored using in-stream loggers. Passive integrated transponder (PIT) tagging and PIT antennas were used to detect outmigration from three streams (Willow, Stony and Hibbard creeks). Population estimates for individual streams ranged from 75 to 2276 for juvenile steelhead and from 0 to 243 for juvenile coho salmon, Oncorhynchus kisutch. No correlation was detected between juvenile steelhead abundance and quality age-0 habitat. Stream temperatures rarely exceeded the thermal limit for steelhead (27 °C). Outmigration rates for three streams ranged from 0.6% to 3.1%, but these estimates were considered minimum values. Low abundance of wild juvenile steelhead and coho salmon alone suggest that the contributions of these tributaries to Lake Michigan fisheries are likely small. Furthermore, relying on returns of wild steelhead produced in these streams is probably insufficient to maintain stream fisheries.     

GRAVEL AUGMENTATION INCREASES SPAWNING UTILIZATION BY ANADROMOUS SALMONIDS: A CASE STUDY FROM CALIFORNIA,USA

Anadromous salmonid diversity and abundance worldwide have been adversely impacted by anthropogenic forces, and millions of dollars are spent each year on stream habitat restoration and enhancement. However, there is a paucity of data comparing site use by salmonids before and after enhancement implementation, and few studies examine the specific environmental conditions that determine whether salmonids utilize an enhanced site. This study examines the use of gravel augmentation to improve spawning site utilization by Chinook salmon (Oncorhynchus tshawytscha) and steelhead trout (Oncorhynchus mykiss) on the Lower American River, California, USA. Spawning increased across all augmentation sites for both species, although there were species‐specific and year‐specific differences in the degree to which a site was utilized and in the spatial distribution of redds in relation to substrate size, habitat features and other redds. There were also differences in redd architecture across sites that were related to differences in gravel size. This study illustrates that gravel augmentation projects can enhance spawning habitat for salmonids where spawning beds have degraded but that species‐specific and site‐specific attributes and gravel size can influence the relative effectiveness of a project. Copyright © 2013 John Wiley & Sons, Ltd.     

USING A NON‐PHYSICAL BEHAVIOURAL BARRIER TO ALTER MIGRATION ROUTING OF JUVENILE CHINOOK SALMON IN THE SACRAMENTO–SAN JOAQUIN RIVER DELTA

Anthropogenic alterations to river systems, such as irrigation and hydroelectric development, can negatively affect fish populations by reducing survival when fish are routed through potentially dangerous locations. Non‐physical barriers using behavioural stimuli are one means of guiding fish away from such locations without obstructing water flow. In the Sacramento–San Joaquin River Delta, we evaluated a bio‐acoustic fish fence (BAFF) composed of strobe lights, sound and a bubble curtain, which was intended to divert juvenile Chinook salmon (Oncorhynchus tshawytscha) away from Georgiana Slough, a low‐survival migration route that branches off the Sacramento River. To quantify fish response to the BAFF, we estimated individual entrainment probabilities from two‐dimensional movement paths of juvenile salmon implanted with acoustic transmitters. Overall, 7.7% of the fish were entrained into Georgiana Slough when the BAFF was on, and 22.3% were entrained when the BAFF was off, but a number of other factors influenced the performance of the BAFF. The effectiveness of the BAFF declined with increasing river discharge, likely because increased water velocities reduced the ability of fish to avoid being swept across the BAFF into Georgiana Slough. The BAFF reduced entrainment probability by up to 40 percentage points near the critical streakline, which defined the streamwise division of flow vectors entering each channel. However, the effect of the BAFF declined moving in either direction away from the critical streakline. Our study shows how fish behaviour and the environment interacted to influence the performance of a non‐physical behavioural barrier in an applied setting. Published 2012. This article is a U.S. Government work and is in the public domain in the USA.     

Factors affecting stranding of juvenile salmonids by wakes from ship passage in the Lower Columbia River

The effects of deep‐draft vessel traffic in confined riverine channels on shorelines and fish are of widespread concern. In the Pacific Northwest of the United States, wakes and subsequent beach run‐up from ships transiting the Lower Columbia River have been observed to strand juvenile salmon and other fish. As part of a before‐and‐after study to assess stranding effects that may be associated with channel deepening, we measured 19 variables from observations of 126 vessel passages at three low‐slope beaches and used multiple logistic regression to discern the significant factors influencing the frequency of stranding. Subyearling Chinook salmon were 82% of the fish stranded over all sites and seasons. Given a low‐slope beach, stranding frequencies for juvenile salmon were significantly related to river location, salmon density in the shallows, a proxy for ship kinetic energy, tidal height and two interactions. The beach types selected for our study do not include all the beach types along the Lower Columbia River so that the stranding probabilities described here cannot be extrapolated river‐wide. A more sophisticated modelling effort, informed by additional field data, is needed to assess salmon losses by stranding for the entire lower river. Such modelling needs to include river‐scale factors such as beach type, berms, proximity to navigation channel, and perhaps, proximity to tributaries that act as sources of outmigrating juvenile salmon. At both river and beach scales, no one factor produces stranding; rather interactions among several conditions produce a stranding event and give stranding its episodic nature. Published in 2010 by John Wiley & Sons, Ltd.     

Comparative Diets of Subyearling Chinook Salmon (Oncorhynchus tshawytscha) and Steelhead (O. mykiss) in the Salmon River,New York

Chinook salmon (Oncorhynchus tshawytscha) and steelhead (O. mykiss) have established naturalized populations throughout the Great Lakes. Young-of-year of these species occur sympatrically for about one month in Lake Ontario tributaries. This study examined the diets of subyearling Chinook salmon and steelhead relative to available food in the Salmon River, New York. Terrestrial invertebrates and trichopterans were the major prey of Chinook salmon, whereas steelhead fed primarily on baetid nymphs and chironomid larvae. Diet overlap was low (0.45) between the species. The diet of Chinook was closely associated to the composition of the drift (0.88). Steelhead diet drew equally from the drift and benthos during the first year of the study, but more closely matched the benthos during the second year. Differences in prey selection, perhaps associated with differences in fish size, in addition to apparent differences in feeding mode (drift versus benthic), likely reduce competitive interactions between these species.     

Effects of Dam Removal on Tule Fall Chinook salmon Spawning Habitat in the White Salmon River,Washington

Condit Dam is one of the largest hydroelectric dams ever removed in the USA. Breached in a single explosive event in October 2011, hundreds‐of‐thousands of cubic metres of sediment washed down the White Salmon River onto spawning grounds of a threatened species, Columbia River tule fall Chinook salmon Oncorhynchus tshawytscha. We investigated over a 3‐year period (2010–2012) how dam breaching affected channel morphology, river hydraulics, sediment composition and tule fall Chinook salmon (hereafter ‘tule salmon’) spawning habitat in the lower 1.7 km of the White Salmon River (project area). As expected, dam breaching dramatically affected channel morphology and spawning habitat due to a large load of sediment released from Northwestern Lake. Forty‐two per cent of the project area that was previously covered in water was converted into islands or new shoreline, while a large pool near the mouth filled with sediments and a delta formed at the mouth. A two‐dimensional hydrodynamic model revealed that pool area decreased 68.7% in the project area, while glides and riffles increased 659% and 530%, respectively. A spatially explicit habitat model found the mean probability of spawning habitat increased 46.2% after dam breaching due to an increase in glides and riffles. Shifting channels and bank instability continue to negatively affect some spawning habitat as sediments continue to wash downstream from former Northwestern Lake, but 300 m of new spawning habitat (river kilometre 0.6 to 0.9) that formed immediately post‐breach has persisted into 2015. Less than 10% of tule salmon have spawned upstream of the former dam site to date, but the run sizes appear healthy and stable. Published 2015. This article is a U.S. Government work and is in the public domain in the USA.     

Performance of four salmonids species in competition with Atlantic salmon

Economically and culturally important salmonid species often compete with Atlantic salmon (Salmo salar) released from stocking programs or that escaped during aquaculture production. Such competitive interactions may lower the individual fitness of these species by reducing survival and body growth. Here, we exposed juvenile brown trout (S. trutta), rainbow trout (Oncorhynchus mykiss), Chinook salmon (O. tshawytscha), and coho salmon (O. kisutch) to juvenile Atlantic salmon in artificial streams for 10 months. Survival and fitness-related traits of the four species were not negatively impacted by the presence of Atlantic salmon. The results suggest that brown trout and rainbow trout have better competitive abilities than Atlantic salmon, and that Chinook salmon and coho salmon have limited competitive interactions with Atlantic salmon. Although we discuss certain environmental conditions that can favor Atlantic salmon as a competitor at the juvenile life stage, Atlantic salmon may have little impact on the productivity of these four species.     

Scenarios for Restoring Floodplain Ecology Given Changes to River Flows Under Climate Change: Case from the San Joaquin River,California

Freshwater ecosystem health has been increasingly linked to floodplain connectivity, and some river restoration efforts now overtly target reconnecting floodplain habitats for species recovery. The dynamic nature of floodplain habitats is not typically accounted for in efforts to plan and evaluate potential floodplain reconnection projects. This study describes a novel approach for integrating streamflow dynamics with floodplain area to quantify species‐specific habitat availability using hydraulic modelling, spatial analysis and statistical measures of flow regime. We used this hydro‐ecological modelling approach to examine the potential habitat for splittail (Pogonichthys macrolepidotus), Chinook salmon (Oncorhynchus tshawytscha) and their food resources under two restoration treatments and two climate change flow scenarios for a study site on San Joaquin River in California. Even with the addition of new floodplain through restoration efforts, the modelling results reveal only 13 streamflow events in the past 80 years had the magnitude and duration required for splittail spawning and rearing, and 14 events had flows long enough for salmon rearing benefits. Under climate change, modelled results suggest only 4–17% of the years in the rest of this century are likely to produce required flow‐related habitat conditions for splittail and salmon rearing along the study reach. Lastly, we demonstrate by simulating augmented reservoir releases that restoration of fish habitat will require a more natural flow regime to make use of restored floodplain and achieve the desired hydrologic habitat connectivity. Copyright © 2014 John Wiley & Sons, Ltd.     

EVALUATING STATISTICAL APPROACHES TO QUANTIFYING JUVENILE CHINOOK SALMON HABITAT IN A REGULATED CALIFORNIA RIVER

Decisions on managed flow releases in regulated rivers should be informed by the best available science. To do this, resource managers require adequate information regarding the tradeoffs between alternative methodologies. In this study, we quantitatively compare two competing multivariate habitat models for juvenile Chinook salmon (Oncorhynchus tschawytscha), a highly valued fish species under serious decline in a large extent of its range. We conducted large‐scale snorkel surveys in the American River, California, to obtain a common dataset for model parameterization. We built one habitat model using Akaike Information Criterion analysis and model averaging, ‘model G’, and a second model by using a standard method of aggregating univariate habitat models, ‘model A’. We calculated Cohen's kappa, percent correctly classified, sensitivity, specificity and the area under a receiver operator characteristic to compare the ability of each model to predict juvenile salmon presence and absence. We compared the predicted useable habitat of each model at nine simulated river discharges where usable habitat is equal to the product of a spatial area and the probability of habitat occupancy at that location. Generally, model G maintained greater predictive accuracy with a difference within 10% across the diagnostic statistics. Two key distinctions between models were that model G predicted 17.2% less useable habitat across simulated flows and had 5% fewer false positive classifications than model A. In contrast, model A had a tendency to over predict habitat occupancy and under predict model uncertainty. The largest discrepancy between model predictions occurred at the lowest flows simulated and in the habitats most likely to be occupied by juvenile salmon. This study supports the utility and quantitative framework of Akaike Information Criterion analysis and model averaging in developing habitat models. Copyright © 2012 John Wiley & Sons, Ltd.     

Migratory salmonid redd habitat characteristics in the Salmon River,New York

Non-native migratory salmonids ascend tributaries to spawn in all the Great Lakes. In Lake Ontario, these species include Chinook salmon (Oncorhynchus tshawytscha), coho salmon (O. kisutch), steelhead (O. mykiss), and brown trout (Salmo trutta). Although successful natural reproduction has been documented for many of these species, little research has been conducted on their spawning habitat. We examined the spawning habitat of these four species in the Salmon River, New York. Differences in fish size among the species were significantly correlated with spawning site selection. In the Salmon River, the larger species spawned in deeper areas with larger size substrate and made the largest redds. Discriminant function analysis correctly classified redds by species 64–100% of the time. The size of substrate materials below Lighthouse Hill Dam is within the preferred ranges for spawning for these four species indicating that river armoring has not negatively impacted salmonid production. Intra-specific and inter-specific competition for spawning sites may influence redd site selection for smaller salmonids and could be an impediment for Atlantic salmon (S. salar) restoration.     

MODELLING CHANGES IN SALMON HABITAT ASSOCIATED WITH RIVER CHANNEL RESTORATION AND FLOW‐INDUCED CHANNEL ALTERATIONS

The River2D two‐dimensional hydraulic and habitat model was used to simulate fall‐run Chinook salmon (Oncorhynchus tschawytscha) spawning and fry and juvenile rearing habitat of the first phase of a stream channel restoration project on Clear Creek, California. Habitat was simulated for a range of stream flows: (1) before restoration; (2) based on the restoration design; (3) immediately after restoration; and (4) after one and two large flow events. Hydraulic and structural data were collected for three sites before restoration, and prerestoration habitat was simulated. Habitat simulated for these sites was extrapolated to the prerestoration area based on habitat mapping. The topographical plan for the restoration was used to simulate the anticipated habitat after restoration. Although the restoration increased spawning habitat, it was less successful for rearing habitat. Channel changes associated with high‐flow events did not entirely negate the benefits of the restoration project. The results of this study point out the need for models that can simulate the changes in channel topography associated with high‐flow events, which could then be used to simulate habitat over time. Published 2013. This article is a U.S. Government work and is in the public domain in the USA.     

Tributary confluences are dynamic thermal refuges for a juvenile salmonid in a warming river network

As rivers warm, cold‐water fish species may alleviate thermal stress by moving into localized thermal refuges such as cold‐water plumes created by cool tributary inflows. We quantified use of two tributary confluence plumes by juvenile steelhead, Oncorhynchus mykiss, throughout the summer, including how trout positioned themselves in relation to temperature within confluence plumes. At two confluences, Cedar and Elder creeks, along the South Fork Eel River, California, USA, we monitored temperatures using in situ logger grids throughout summer 2016. Fish were counted within confluences via snorkel surveys five times a day on 5 days at each site. We found diel and seasonal dependence on confluence use by steelhead, especially at the Cedar Creek confluence, where mainstem temperatures exceeded 28°C. At this site, fish moved into the confluence on the warmest days and warmest times of the day. Fish observed within the Cedar Creek confluence plume were most common in locations between 20–22°C, rather than the coldest locations (14.5°C). At Elder Creek, where mainstem temperatures remained below 24°C, there was little relationship between mainstem temperature and steelhead presence in the confluence plume. At both sites, steelhead distribution within plumes was influenced by spatial variation of temperature and mean temperature in surveyed grid cells. Our results show that cool tributaries flowing into warmer mainstem reaches (over 24°C) likely create important thermal refuges for juvenile steelhead. As mainstem rivers warm with climate change, cool‐water tributary inputs may become more important for sustaining cold‐water salmonids near the southern end of their range.     

USE OF HYDRAULIC MODELLING TO ASSESS PASSAGE FLOW CONNECTIVITY FOR SALMON IN STREAMS

The maintenance of hydrologic connectivity in river networks has become an important principle for guiding management and conservation planning for threatened salmon populations, yet our understanding of how fish movement is impaired by spatial and temporal variation in connectivity remains limited. In this study, a two‐dimensional hydraulic modelling approach is presented to evaluate flow connectivity in relation to passage requirements of adult steelhead trout (Oncorhynchus mykiss) in coastal California streams. High‐resolution topographic data of stream reaches with distinct channel morphology were collected using terrestrial light detection and ranging surveys and linked with water surface measurements to calibrate hydraulic model simulations. Quantitative metrics of longitudinal flow connectivity were developed to assess fish passage suitability in relation to stream discharge. Measured flow data from the 2008–2009 winter season and simulated long‐term records indicated that suitable passage flows occur with relatively low frequency and duration at all sites, suggesting that instream flow protections for fish passage are warranted. Results from the hydraulic modelling simulations were then compared with two alternative methods for assessing passage flows. A regional formula used by the State of California to identify minimum instream flow needs provided conservative estimates of passage flow requirements, whereas an approach based on riffle crest water depths underestimated flow needs. The hydraulic modelling approach appears well suited for simulating flows for fish passage studies and may be particularly useful for testing alternative environmental flow assessment methods and evaluating habitat–flow relationships in stream reaches of importance, such as critical habitat for threatened fish species. Copyright © 2011 John Wiley & Sons, Ltd.