新基因水稻 OsLSD1 的克隆及拟南芥和水稻类 LSD1 基因家族的生物信息学分析
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国家重点基础研究发展规划项目(973)(G2000016203)和国家自然科学基金资助项目(30270706).


Cloning of a Novel Rice Gene OsLSD1 and Bioinformatic Analysis of LSD1-like Gene Family From Arabidopsis and Rice
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This work was supported by grants from The Special Funds for Major State Basic Research of China (G2000016203) and The National Natural Sciences Foundation of China (30270706).

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    摘要:

    类 LSD1 (LSD1-like) 基因家族是一类特殊的 C2C2 型锌指蛋白基因,编码植物特有的转录因子 . 目前已经研究的 2 个成员拟南芥 LSD1 (lesions stimulating disease resistance 1) 和 LOL1 (LSD-One-Like 1) 基因均参与植物细胞程序化死亡 (programmed cell death, PCD) 的调控 . 从水稻 cDNA 文库中克隆到 1 个类 LSD1 基因,命名为 OsLSD1. 该基因长 988 bp ,包含一个 432 bp 的开放阅读框,推导的氨基酸序列 (143 个氨基酸 ) 含有 3 个内部保守的锌指结构域 . DNA 印迹结果表明 OsLSD1 基因在水稻基因组中为单拷贝,且在根、茎和叶中表达 . 借助于生物信息学分析技术,从拟南芥和水稻数据库中各识别出 5 个和 7 个 ( 包括 OsLSD1) 类 LSD1 基因 . 分析了这些类 LSD1 基因的结构,蛋白质结构域组成 . 系统进化分析表明,无论基于编码区的核苷酸或氨基酸序列都可以将这些类 LSD1 基因分为 2 类 . 虽然不存在拟南芥或水稻特有的类 LSD1 蛋白,但有些结构域是水稻所特有的,也有些基因是来源于复制事件 .

    Abstract:

    LSD1-like proteins are a family of plant-specific transcription factors that contain a specific class of C2C2 type zinc finger domain. Two members of this family have been identified and proved to control plant programmed cell death (PCD) in Arabidopsis. Here, a novel rice LSD1-like gene was cloned from a cDNA library and designated as OsLSD1 (for Oryza sativa LSD1). The cDNA is 988 bp in size, containing an open reading frame of 432 bp. The predicted OsLSD1 protein (143 amino acid residues) contains three internally conserved zinc finger domains. Southern blot indicated that OsLSD1 is a single-copy gene in rice. Furthermore, the OsLSD1 gene was expressed constitutively in rice root, stem and leaf. Using Bioinformatic tool, five and seven LSD1-like genes were identified from the databases of Arabidopsis and rice, respectively. The gene structure and domain organization of these LSD1-like genes were determined. Phylogenetic analysis of their coding sequences and predicted amino acid sequences suggested these genes can be classified into two classes, and a gene duplication event was identified. Although there is no specific class of LSD1-like gene in Arabidopsis or rice, some rice-specific zinc finger domains are found.

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王丽娟,田颖川,何朝族.新基因水稻 OsLSD1 的克隆及拟南芥和水稻类 LSD1 基因家族的生物信息学分析[J].生物化学与生物物理进展,2005,32(3):268-274

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